International Journal of Computational Biology and Drug Design (IJCBDD), Volume 1

Volume 1, Number 1, 2008

• Guo-Zheng Li, Jack Y. Yang, Wen-Cong Lu, Dan Li, Mary Qu Yang:
  Improving prediction accuracy of drug activities by utilising unlabelled instances with feature selection. 1-13
  
• Liangjiang Wang, Stephanie Jimenez Irausquin, Jack Y. Yang:
  Prediction of lipid-interacting amino acid residues from sequence features. 14-25
  
• Mohieddine Missaoui, David R. C. Hill, Pierre Peyret:
  A comparison of algorithms for a complete backtranslation of oligopeptides. 26-38
  
• Minseo Park, Deane L. Falcone, Karen M. Daniels:
  Detection and prediction of alternative splicing in Arabidopsis thaliana. 39-58
  
• Xiaoli Li, Jun-Xiang Lee, Bharadwaj Veeravalli, See-Kiong Ng:
  Inferring Transcription Factor interactions using a novel HV-SVM classifier. 59-73
  
• Kenneth Sundberg, Timothy O'Connor, Hyrum Carroll, Mark J. Clement, Quinn Snell:
  Parsimony accelerated Maximum Likelihood searches. 74-87
  
• Swapnoneel Roy, Ashok Kumar Thakur:
  Approximate strip exchanging. 88-101
  

Volume 1, Number 2, 2008

• Shibin Qiu, Terran Lane:
  siRNA silencing efficacy prediction using the RNA string kernel. 103-121
  
• Abdellali Kelil, Shengrui Wang, Ryszard Brzezinski:
  CLUSS2: an alignment-independent algorithm for clustering protein families with multiple biological functions. 122-140
  
• Haiying Wang, Huiru Zheng, Jinglu Hu:
  Poisson approach to clustering analysis of regulatory sequences. 141-157
  
• Hyung-Won Koh, Lars Hildebrand:
  A Bottom-Up Approach to the Biclustering-Problem. 158-173
  
• Vinhthuy Phan, Kriangsiri Malasri:
  BioTDMS: a general-purpose system for integrative management of bioinformatics tools and data. 174-184
  
• Huitao Sheng, Kishan Mehrotra, Chilukuri K. Mohan, Ramesh Raina:
  A motif extraction algorithm based on hashing and modulo-4 arithmetic. 185-199
  
• Zoé Lacroix, Christophe Legendre:
  BIPASS: Design of alternative splicing services. 200-217
  

Volume 1, Number 3, 2008

• Jonathan L. Jesneck, Jack Y. Yang:
  Promoting synergistic research and education in computational biology and drug design. 219-223
  
• Ayca C. Pehlivanli, Turgay Ibrikci, Okan K. Ersoy:
  Consensual classification of drug and nondrug compounds. 224-234
  
• Patrick Shaughnessy, Gary Livingston, Michael V. Graves:
  Towards predicting Protein-Protein Interactions in novel organisms. 235-253
  
• Chao Zhang, Trupti Joshi, Guan Ning Lin, Dong Xu:
  An integrated probabilistic approach for gene function prediction using multiple sources of high-throughput data. 254-274
  
• Amira Djebbari, Ziying Liu, Sieu Phan, Fazel Famili:
  An ensemble machine learning approach to predict survival in breast cancer. 275-294
  
• Christopher M. Frenz, Philippe P. Lefebvre:
  Molecular modelling insights into DFNA15 mediated enhancement of POU4F3 stability. 295-301
  
• Carol Lushbough, Michael K. Bergman, Carolyn J. Lawrence, Douglas Jennewein, Volker Brendel:
  Implementing bioinformatic workflows within the BioExtract Server. 302-312
  
• Ning Weng, Benfano Soewito:
  Evaluating DNA sequence searching algorithms on multicore. 313-327
  

Volume 1, Number 4, 2008

• Pan Du, Simon M. Lin, Mary Qu Yang, Jack Y. Yang:
  2009 and beyond: the decade of personalised medicine. 329-333
  
• Tian-Yu Liu, Guo-Zheng Li, Jack Y. Yang, Mary Qu Yang:
  Feature selection for the imbalanced QSAR problems by using EasyEnsemble. 334-346
  
• Ankit Agrawal, Volker Brendel, Xiaoqiu Huang:
  Pairwise statistical significance and empirical determination of effective gap opening penalties for protein local sequence alignment. 347-367
  
• Nathan E. Wineinger, Richard E. Kennedy, Stephen W. Erickson, Mary K. Wojczynski, Carl E. Bruder, Hemant K. Tiwari:
  Statistical issues in the analysis of DNA Copy Number Variations. 368-395
  
• Chia-Ju Lee, Dong Fu, Pan Du, Hongmei Jiang, Simon M. Lin, Warren A. Kibbe:
  A divide-and-conquer strategy to solve the out-of-memory problem of processing thousands of Affymetrix microarrays. 396-405
  
• Michael Lawrence:
  Software for the interactive visualisation of experimental data in the genomic context. 406-421
  
• Bo-ra Hyun, Hwiesung Jung, Woo-Hyuk Jang, Suk Hoon Jung, Dong-Soo Han:
  Weighted feature value based Drug Target Protein prediction. 422-433
  
• Ayca C. Pehlivanli, Okan K. Ersoy, Turgay Ibrikci:
  Drug/nondrug classification with consensual Self-Organising Map and Self-Organising Global Ranking algorithms. 434-445