Briefings in Bioinformatics, Volume 6

Volume 6, Number 1, March 2005

Russ B. Altman: Editorial: Annual progress in bioinformatics. 4-5 BibTeX
Serafim Batzoglou: The many faces of sequence alignment. 6-22 BibTeX
Christopher Lee, Qi Wang: Bioinformatics analysis of alternative splicing. 23-33 BibTeX
Olga G. Troyanskaya: Putting microarrays in a context: Integrated analysis of diverse biological data. 34-43 BibTeX
Sean D. Mooney: Bioinformatics approaches and resources for single nucleotide polymorphism functional analysis. 44-56 BibTeX
Aaron M. Cohen, William R. Hersh: A survey of current work in biomedical text mining. 57-71 BibTeX
Peter Bengert, Thomas Dandekar: Current efforts in the analysis of RNAi and RNAi target genes. 72-85 BibTeX
David P. Kreil, Roslin Russell: There is no silver bullet - a guide to low-level data transforms and normalisation methods for microarray data. 86-97 BibTeX

Martin J. Bishop: Editorial. 117 BibTeX
Igor B. Rogozin, Alexander V. Sverdlov, Vladimir N. Babenko, Eugene V. Koonin: Analysis of evolution of exon-intron structure of eukaryotic genes. 118-134 BibTeX
Rudi Alberts, Jingyuan Fu, Morris A. Swertz, L. Alrik Lubbers, Casper J. Albers, Ritsert C. Jansen: Combining microarrays and genetic analysis. 135-145 BibTeX
Ravi Sachidanandam: RNAi as a bioinformatics consumer. 146-162 BibTeX
Hendrik Fuß, Werner Dubitzky, C. Stephen Downes, Mary Jo Kurth: Mathematical models of cell cycle regulation. 163-177 BibTeX
Pieter B. T. Neerincx, Jack A. M. Leunissen: Evolution of web services in bioinformatics. 178-188 BibTeX
Jane Loveland: VEGA, the genome browser with a difference. 189-193 BibTeX
Don Gilbert: Biomolecular Interaction Network Database. 194-198 BibTeX

Jacob Koehler: Editorial. 220-221 BibTeX
Hagit Shatkay: Hairpins in bookstacks: Information retrieval from biomedical text. 222-238 BibTeX
Irena Spasic, Sophia Ananiadou, John McNaught, Anand Kumar: Text mining and ontologies in biomedicine: Making sense of raw text. 239-251 BibTeX
Sougata Mukherjea: Information retrieval and knowledge discovery utilising a biomedical Semantic Web. 252-262 BibTeX
Andre Skusa, Alexander Rüegg, Jacob Köhler: Extraction of biological interaction networks from scientific literature. 263-276 BibTeX
Marc Weeber, Jan A. Kors, Barend Mons: Online tools to support literature-based discovery in the life sciences. 277-286 BibTeX
Matthias Scherf, Anton Epple, Thomas Werner: The next generation of literature analysis: Integration of genomic analysis into text mining. 287-297 BibTeX
Get ready to GO! A biologist's guide to the Gene Ontology. 298-304 BibTeX

Editorial

Papers

Colin D. Meiklejohn, Jeffrey P. Townsend:
A Bayesian method for analysing spotted microarray data. 318-330
Electronic Edition (link) BibTeX
Paul C. Boutros, Allan B. Okey:
Unsupervised pattern recognition: An introduction to the whys and wherefores of clustering microarray data. 331-343
Electronic Edition (link) BibTeX
William R. Hersh:
Evaluation of biomedical text-mining systems: Lessons learned from information retrieval. 344-356
Electronic Edition (link) BibTeX
Ulf Leser, Jörg Hakenberg:
What makes a gene name? Named entity recognition in the biomedical literature. 357-369
Electronic Edition (link) BibTeX
John W. Keele, James E. Wray:
Software agents in molecular computational biology. 370-379
Electronic Edition (link) BibTeX
Gregory W. Carter:
Inferring network interactions within a cell. 380-389
Electronic Edition (link) BibTeX

Tutorial section

Paulo A. S. Nuin:
WinPop 2.5: Software for representing population genetics phenomena. 390-393
Electronic Edition (link) BibTeX

Software review

Zuofeng Li, Li Wang, Yang Zhong:
Detecting horizontal gene transfer with T-REX and RHOM programs. 394-401
Electronic Edition (link) BibTeX

Abstracts