Briefings in Bioinformatics, Volume 1

Volume 1, Number 1, February 2000

• Martin Bishop: Editorial. 5-8

• Robert Stevens, Crispin Miller: Wrapping and Interoperating Bioinformatics Resources Using CORBA. 9-21

• Clare Sansom: Database Searching with DNA and Protein Sequences: An Introduction. 22-32
• Igor B. Rogozin, Galina V. Glazko, M. V. Glazkov: Computer Prediction of Sites Associated with Various Elements of the Nuclear Matrix. 33-44
• Terri K. Attwood: The Role of Pattern Databases in Sequence Analysis. 45-59
• Beth K. Gatewood, Robert W. Cottingham: Mouse-human Comparative Map Resources on the Web. 60-75
• C. Victor Jongeneel: Searching the Expressed Sequence Tag (EST) Databases: Panning for Genes. 76-92
• Darrell Conklin, David P. Yee, Richard J. Millar, J. Engelbrecht, H. Vissing: Mining of Assembled Expressed Sequence Tag (EST) Data for Protein Families: Application to the G Protein-coupled Receptor Superfamily. 93-99

• Richard J. Mural: Software Review Introduction. 100
• Sylvia Spengler: Software Review. 101-115

Volume 1, Number 2, May 2000

• Martin Bishop: Editorial. 116

• Mike Pagel: Phylogenetic-evolutionary Approaches to Bioinformatics. 117-130
• Simon Kelley: Getting Started with Acedb. 131-137
• Jo L. Dicks: Plant Genome Databases: From References to Inference Tools. 138-150
• Andrew S. Law, Alan L. Archibald: Farm Animal Genome Databases. 151-160
• Heikki Lehväslaiho: Human Sequence Variation and Mutation Databases. 161-166
• Kay Hofmann: Sensitive Protein Comparisons with Profiles and Hidden Markov Models. 167-178
• Laura Raddrizzani, Jürgen Hammer: Epitope Scanning Using Virtual Matrix-based Algorithms. 179-189
• Christian Schönbach, P. Kowalski-Saunders, Vladimir Brusic: Data Warehousing in Molecular Biology. 190-198

• Richard J. Mural: Software Review. 199-211

Volume 1, Number 3, September 2000

• Martin Bishop: Editorial. 212-213

• Vladimir B. Baji: Comparing the Success of Different Prediction Software in Sequence Analysis: A Review. 214-228
• Jon C. Ison, Sinead B. O'Leary, Alan J. Bleasby, David S. Moss: Information Resources for the Bioinformatician. 229-235
• Graziano Pesole, Giorgio Grillo, Alessandra Larizza, Sabino Liuni: The Untranslated Regions of Eukaryotic MRNAs: Structure, Function, Evolution and Bioinformatic Tools for Their Analysis. 236-249
• Jérôme Wojcik, Vincent Schächter: Proteomic Databases and Software on the Web. 250-259
• Igor B. Rogozin, V. I. Mayorov, M. V. Lavrentieva, Luciano Milanesi, L. R. Adkison: Prediction and Phylogenetic Analysis of Mammalian Short Interspersed Elements (SINEs). 260-274
• Thomas Lengauer, Ralf Zimmer: Protein Structure Prediction Methods for Drug Design. 275-288
• Donna L. Montgomery: Tuberculosis Vaccine Design: Influence of the Completed Genome Sequence. 289-296
• Detlef Wolf, Christopher P. Gray, Antoine de Saizieu: Visualising Gene Expression in Its Metabolic Context. 297-304

• Jon C. Ison: Software Review Exploring Protein Domain Structure. 305-323

Volume 1, Number 4, November 2000

• Thangavel Alphonse Thanaraj, Alan J. Robinson, J. Muila, Jean-Jack M. Riethoven: Editorial. 324-330

• Michael Q. Zhang: Discriminant Analysis and Its Application in DNA Sequence Motif Recognition. 331-342
• Thangavel Alphonse Thanaraj, Alan J. Robinson: Prediction of Exact Boundaries of Exons. 343-356
• Mikhail S. Gelfand, Pavel S. Novichkov, Elena S. Novichkova, Andrey A. Mironov: Comparative Analysis of Regulatory Patterns in Bacterial Genomes. 357-371
• Thomas Werner: Identification and Functional Modelling of DNA Sequence Elements of Transcription. 372-380
• Thomas Wiehe, Roderic Guigó, Webb Miller: Genome Sequence Comparisons: Hurdles in the Fast Lane to Functional Genomics. 381-388
• Klaus F. X. Mayer, Kai Lemcke, Christine M. Schüller, Stephen Rudd, Paolo Zaccaria: Arabidopsis Genome Analysis As Exemplified By Analysis of Chromosome 4. 389-397
• Robert Stevens, Carole A. Goble, Sean Bechhofer: Ontology-based Knowledge Representation for Bioinformatics. 398-414

• Frank W. Larimer: Software Review HOBACGEN: Homologous Bacterial Genes Database. 415