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John D. Westbrook Vis

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*2009
21EEHelen M. Berman, John D. Westbrook, Margaret J. Gabanyi, Wendy Tao, Raship Shah, Andrei Kouranov, Torsten Schwede, Konstantin Arnold, Florian Kiefer, Lorenza Bordoli, Jürgen Kopp, Michael Podvinec, Paul D. Adams, Lester G. Carter, Wladek Minor, Rajesh Nair, Joshua La Baer: The protein structure initiative structural genomics knowledgebase. Nucleic Acids Research 37(Database-Issue): 365-368 (2009)
2008
20EEKatherine G. Herbert, Junilda Spirollari, Jason Tsong-Li Wang, William H. Piel, John D. Westbrook, Winona C. Barker, Zhang-Zhi Hu, Cathy H. Wu: Bioinformatic Databases. Wiley Encyclopedia of Computer Science and Engineering 2008
19EEKim Henrick, Zukang Feng, Wolfgang Bluhm, Dimitris Dimitropoulos, Jurgen F. Doreleijers, Shuchismita Dutta, Judith L. Flippen-Anderson, John M. C. Ionides, Chisa Kamada, Eugene Krissinel, Catherine L. Lawson, John L. Markley, Haruki Nakamura, Richard Newman, Yukiko Shimizu, Jawahar Swaminathan, Sameer Velankar, Jeramia Ory, Eldon L. Ulrich, Wim Vranken, John D. Westbrook, Reiko Yamashita, Huanwang Yang, Jasmine Young, Muhammed Yousufuddin, Helen M. Berman: Remediation of the protein data bank archive. Nucleic Acids Research 36(Database-Issue): 426-433 (2008)
2006
18EEAndrei Kouranov, Lei Xie, Joanna de la Cruz, Li Chen, John D. Westbrook, Philip E. Bourne, Helen M. Berman: The RCSB PDB information portal for structural genomics. Nucleic Acids Research 34(Database-Issue): 302-305 (2006)
2005
17EEJohn D. Westbrook, Nobutoshi Ito, Haruki Nakamura, Kim Henrick, Helen M. Berman: PDBML: the representation of archival macromolecular structure data in XML. Bioinformatics 21(7): 988-992 (2005)
16EERasmus H. Fogh, Wayne Boucher, Wim F. Vranken, Anne Pajon, Tim J. Stevens, T. N. Bhat, John D. Westbrook, John M. C. Ionides, Ernest D. Laue: A framework for scientific data modeling and automated software development. Bioinformatics 21(8): 1678-1684 (2005)
15EENita Deshpande, Kenneth J. Addess, Wolfgang Bluhm, Jeffrey C. Merino-Ott, Wayne Townsend-Merino, Qing Zhang, Charlie Knezevich, Lie Xie, Li Chen, Zukang Feng, Rachel Kramer Green, Judith L. Flippen-Anderson, John D. Westbrook, Helen M. Berman, Philip E. Bourne: The RCSB Protein Data Bank: a redesigned query system and relational database based on the mmCIF schema. Nucleic Acids Research 33(Database-Issue): 233-237 (2005)
2004
14EEPhilip E. Bourne, C. K. J. Allerston, Werner G. Krebs, Wilfred W. Li, Ilya N. Shindyalov, Adam Godzik, Iddo Friedberg, Tong Liu, David L. Wild, Seungwoo Hwang, Zoubin Ghahramani, Li Chen, John D. Westbrook: The Status of Structural Genomics Defined Through the Analysis of Current Targets and Structures. Pacific Symposium on Biocomputing 2004: 375-386
13EEZukang Feng, Li Chen, Himabindu Maddula, Ozgur Akcan, Rose Oughtred, Helen M. Berman, John D. Westbrook: Ligand Depot: a data warehouse for ligands bound to macromolecules. Bioinformatics 20(13): 2153-2155 (2004)
12EELi Chen, Rose Oughtred, Helen M. Berman, John D. Westbrook: TargetDB: a target registration database for structural genomics projects. Bioinformatics 20(16): 2860-2862 (2004)
11 Philip E. Bourne, John D. Westbrook, Helen M. Berman: The Protein Data Bank and lessons in data management. Briefings in Bioinformatics 5(1): 23-30 (2004)
10 Philip E. Bourne, Kenneth J. Addess, Wolfgang Bluhm, Li Chen, Nita Deshpande, Zukang Feng, Ward Fleri, Rachel Kramer Green, Jeffrey C. Merino-Ott, Wayne Townsend-Merino, Helge Weissig, John D. Westbrook, Helen M. Berman: The distribution and query systems of the RCSB Protein Data Bank. Nucleic Acids Research 32(Database-Issue): 223-225 (2004)
2003
9 John D. Westbrook, Zukang Feng, Li Chen, Huanwang Yang, Helen M. Berman: The Protein Data Bank and structural genomics. Nucleic Acids Research 31(1): 489-491 (2003)
8 Huanwang Yang, Fabrice Jossinet, Neocles Leontis, Li Chen, John D. Westbrook, Helen M. Berman, Eric Westhof: Tools for the automatic identification and classification of RNA base pairs. Nucleic Acids Research 31(13): 3450-3460 (2003)
7EEHelen M. Berman, John D. Westbrook: The Need for Dictionaries, Ontologies, and Controlled Vocabularies. OMICS 7(1): 9-10 (2003)
2002
6 Douglas S. Greer, John D. Westbrook, Philip E. Bourne: An ontology driven architecture for derived representations of macromolecular structure. Bioinformatics 18(9): 1280-1281 (2002)
5 John D. Westbrook, Zukang Feng, Shri Jain, T. N. Bhat, Narmada Thanki, Veerasamy Ravichandran, Gary Gilliland, Wolfgang Bluhm, Helge Weissig, Douglas S. Greer, Philip E. Bourne, Helen M. Berman: The Protein Data Bank: unifying the archive. Nucleic Acids Research 30(1): 245-248 (2002)
2001
4 T. N. Bhat, Philip E. Bourne, Zukang Feng, Gary Gilliland, Shri Jain, Veerasamy Ravichandran, Bohdan Schneider, Kata Schneider, Narmada Thanki, Helge Weissig, John D. Westbrook, Helen M. Berman: The PDB data uniformity project. Nucleic Acids Research 29(1): 214-218 (2001)
2000
3 John D. Westbrook, Philip E. Bourne: STAR/mmCIF: An ontology for macromolecular structure. Bioinformatics 16(2): 159-168 (2000)
2 Helen M. Berman, John D. Westbrook, Zukang Feng, Gary Gilliland, T. N. Bhat, Helge Weissig, Ilya N. Shindyalov, Philip E. Bourne: The Protein Data Bank. Nucleic Acids Research 28(1): 235-242 (2000)
1992
1EEAnnankoil R. Srinivasan, John D. Westbrook, Wilma K. Olson: An Interactive FORTRAN Program for Three-dimensional Molecular Visualization. Computers & Chemistry 16(3): 265-266 (1992)

Coauthor Index

1Paul D. Adams [21]
2Kenneth J. Addess [10] [15]
3Ozgur Akcan [13]
4C. K. J. Allerston [14]
5Konstantin Arnold [21]
6Joshua La Baer [21]
7Winona C. Barker [20]
8Helen M. Berman [2] [4] [5] [7] [8] [9] [10] [11] [12] [13] [15] [17] [18] [19] [21]
9T. N. Bhat [2] [4] [5] [16]
10Wolfgang Bluhm [5] [10] [15] [19]
11Lorenza Bordoli [21]
12Wayne Boucher [16]
13Philip E. Bourne [2] [3] [4] [5] [6] [10] [11] [14] [15] [18]
14Lester G. Carter [21]
15Li Chen [8] [9] [10] [12] [13] [14] [15] [18]
16Joanna de la Cruz [18]
17Nita Deshpande [10] [15]
18Dimitris Dimitropoulos [19]
19Jurgen F. Doreleijers [19]
20Shuchismita Dutta [19]
21Zukang Feng [2] [4] [5] [9] [10] [13] [15] [19]
22Ward Fleri [10]
23Judith L. Flippen-Anderson [15] [19]
24Rasmus H. Fogh [16]
25Iddo Friedberg [14]
26Margaret J. Gabanyi [21]
27Zoubin Ghahramani [14]
28Gary Gilliland [2] [4] [5]
29Adam Godzik [14]
30Rachel Kramer Green [10] [15]
31Douglas S. Greer [5] [6]
32Kim Henrick [17] [19]
33Katherine G. Herbert [20]
34Zhang-Zhi Hu [20]
35Seungwoo Hwang [14]
36John M. C. Ionides [16] [19]
37Nobutoshi Ito [17]
38Shri Jain [4] [5]
39Fabrice Jossinet [8]
40Chisa Kamada [19]
41Florian Kiefer [21]
42Charlie Knezevich [15]
43Jürgen Kopp [21]
44Andrei Kouranov [18] [21]
45Werner G. Krebs [14]
46Eugene Krissinel [19]
47Ernest D. Laue [16]
48Catherine L. Lawson [19]
49Neocles Leontis [8]
50Wilfred W. Li [14]
51Tong Liu [14]
52Himabindu Maddula [13]
53John L. Markley [19]
54Jeffrey C. Merino-Ott [10] [15]
55Wladek Minor [21]
56Rajesh Nair [21]
57Haruki Nakamura [17] [19]
58Richard Newman [19]
59Wilma K. Olson [1]
60Jeramia Ory [19]
61Rose Oughtred [12] [13]
62Anne Pajon [16]
63William H. Piel [20]
64Michael Podvinec [21]
65Veerasamy Ravichandran [4] [5]
66Bohdan Schneider [4]
67Kata Schneider [4]
68Torsten Schwede [21]
69Raship Shah [21]
70Yukiko Shimizu [19]
71Ilya N. Shindyalov [2] [14]
72Junilda Spirollari [20]
73Annankoil R. Srinivasan [1]
74Tim J. Stevens [16]
75Jawahar Swaminathan [19]
76Wendy Tao [21]
77Narmada Thanki [4] [5]
78Wayne Townsend-Merino [10] [15]
79Eldon L. Ulrich [19]
80Sameer Velankar [19]
81Wim Vranken [19]
82Wim F. Vranken [16]
83Jason Tsong-Li Wang (Jason T. L. Wang) [20]
84Helge Weissig [2] [4] [5] [10]
85Eric Westhof [8]
86David L. Wild [14]
87Cathy H. Wu [20]
88Lei Xie [18]
89Lie Xie [15]
90Reiko Yamashita [19]
91Huanwang Yang [8] [9] [19]
92Jasmine Young [19]
93Muhammed Yousufuddin [19]
94Qing Zhang [15]

Colors in the list of coauthors

Copyright © Tue Nov 3 08:52:44 2009 by Michael Ley (ley@uni-trier.de)