Janet M. Thornton Vis

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45EEClaudia Andreini, Ivano Bertini, Gabriele Cavallaro, Gemma L. Holliday, Janet M. Thornton: Metal-MACiE: a database of metals involved in biological catalysis. Bioinformatics 25(16): 2088-2089 (2009)
44EEDavid Talavera, Roman A. Laskowski, Janet M. Thornton: WSsas: a web service for the annotation of functional residues through structural homologues. Bioinformatics 25(9): 1192-1194 (2009)
43EEAlison L. Cuff, Ian Sillitoe, Tony Lewis, Oliver Redfern, Richard Garratt, Janet M. Thornton, Christine A. Orengo: The CATH classification revisited - architectures reviewed and new ways to characterize structural divergence in superfamilies. Nucleic Acids Research 37(Database-Issue): 310-314 (2009)
42EERafael Najmanovich, Natalja Kurbatova, Janet M. Thornton: Detection of 3D atomic similarities and their use in the discrimination of small molecule protein-binding sites. ECCB 2008: 105-111
41EEGabrielle A. Reeves, Karen Eilbeck, Michele Magrane, Claire O'Donovan, Luisa Montecchi-Palazzi, Midori A. Harris, Sandra E. Orchard, Rafael C. Jimenez, Andreas Prlic, Tim J. P. Hubbard, Henning Hermjakob, Janet M. Thornton: The Protein Feature Ontology: a tool for the unification of protein feature annotations. Bioinformatics 24(23): 2767-2772 (2008)
40EEMatthew Bashton, Irene Nobeli, Janet M. Thornton: PROCOGNATE: a cognate ligand domain mapping for enzymes. Nucleic Acids Research 36(Database-Issue): 618-622 (2008)
39EEAbdullah Kahraman, Richard J. Morris, Roman A. Laskowski, Janet M. Thornton: Variation of geometrical and physicochemical properties in protein binding pockets and their ligands. BMC Bioinformatics 8(S-8): (2007)
38EERafael Najmanovich, Abdellah Allali-Hassani, Richard J. Morris, Ludmila Dombrovsky, Patricia W. Pan, Masoud Vedadi, Alexander N. Plotnikov, Aled M. Edwards, Cheryl H. Arrowsmith, Janet M. Thornton: Analysis of binding site similarity, small-molecule similarity and experimental binding profiles in the human cytosolic sulfotransferase family. Bioinformatics 23(2): 104-109 (2007)
37EELesley H. Greene, Tony E. Lewis, Sarah Addou, Alison L. Cuff, Timothy Dallman, Mark Dibley, Oliver Redfern, Frances M. G. Pearl, Rekha Nambudiry, Adam Reid, Ian Sillitoe, Corin Yeats, Janet M. Thornton, Christine A. Orengo: The CATH domain structure database: new protocols and classification levels give a more comprehensive resource for exploring evolution. Nucleic Acids Research 35(Database-Issue): 291-297 (2007)
36EEGemma L. Holliday, Daniel E. Almonacid, Gail J. Bartlett, Noel M. O'Boyle, James W. Torrance, Peter Murray-Rust, John B. O. Mitchell, Janet M. Thornton: MACiE (Mechanism, Annotation and Classification in Enzymes): novel tools for searching catalytic mechanisms. Nucleic Acids Research 35(Database-Issue): 515-520 (2007)
35EENicola D. Kerrison, Colin Selman, Steven J. Lingard, Janet M. Thornton, Linda Partridge, Dominic J. Withers: Living longer by dieting: analysis of transcriptional response after caloric restriction. BMC Bioinformatics 6(S-3): (2005)
34EERichard J. Morris, Rafael Najmanovich, Abdullah Kahraman, Janet M. Thornton: Real spherical harmonic expansion coefficients as 3D shape descriptors for protein binding pocket and ligand comparisons. Bioinformatics 21(10): 2347-2355 (2005)
33EECarles Ferrer-Costa, H. P. Shanahan, Susan Jones, Janet M. Thornton: HTHquery: a method for detecting DNA-binding proteins with a helix-turn-helix structural motif. Bioinformatics 21(18): 3679-3680 (2005)
32EEGemma L. Holliday, Gail J. Bartlett, Daniel E. Almonacid, Noel M. O'Boyle, Peter Murray-Rust, Janet M. Thornton, John B. O. Mitchell: MACiE: a database of enzyme reaction mechanisms. Bioinformatics 21(23): 4315-4316 (2005)
31EEFrances M. G. Pearl, Annabel E. Todd, Ian Sillitoe, Mark Dibley, Oliver Redfern, Tony E. Lewis, Christopher Bennett, Russell L. Marsden, Alastair Grant, David Lee, Adrian Akpor, Michael Maibaum, Andrew P. Harrison, Timothy Dallman, Gabrielle A. Reeves, Ilhem Diboun, Sarah Addou, Stefano Lise, Caroline E. Johnston, Antonio Sillero, Janet M. Thornton, Christine A. Orengo: The CATH Domain Structure Database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis. Nucleic Acids Research 33(Database-Issue): 247-251 (2005)
30EERoman A. Laskowski, Victor V. Chistyakov, Janet M. Thornton: PDBsum more: new summaries and analyses of the known 3D structures of proteins and nucleic acids. Nucleic Acids Research 33(Database-Issue): 266-268 (2005)
29EECatherine Brooksbank, Graham Cameron, Janet M. Thornton: The European Bioinformatics Institute's data resources: towards systems biology. Nucleic Acids Research 33(Database-Issue): 46-53 (2005)
28EERoman A. Laskowski, James D. Watson, Janet M. Thornton: ProFunc: a server for predicting protein function from 3D structure. Nucleic Acids Research 33(Web-Server-Issue): 89-93 (2005)
27EEJonathan A. Barker, Janet M. Thornton: Software Engineering Challenges in Bioinformatics. ICSE 2004: 12-15
26EEJanet M. Thornton, David Gilbert, Catherine Brooksbank: ISMB/ECCB 2004. ISMB/ECCB (Supplement of Bioinformatics) 2004: 1-2
25EERichard A. George, Ruth V. Spriggs, Janet M. Thornton, Bissan Al-Lazikani, Mark B. Swindells: SCOPEC: a database of protein catalytic domains. ISMB/ECCB (Supplement of Bioinformatics) 2004: 130-136
24EEJanet M. Thornton, David Gilbert, Catherine Brooksbank: ISMB/ECCB 2004 Organization. ISMB/ECCB (Supplement of Bioinformatics) 2004: 3-5
23 Juan Garcia Ranea, Alastair Grant, Janet M. Thornton, Christine A. Orengo: Microeconomic Principles Explain an Optimal Genome Size in Bacteria. Spanish Bioinformatics Conference 2004: 43
22EEH. P. Shanahan, Janet M. Thornton: An examination of the conservation of surface patch polarity for proteins. Bioinformatics 20(14): 2197-2204 (2004)
21EEJames E. Bray, Russell L. Marsden, Stuart C. G. Rison, Alexei Savchenko, Aled M. Edwards, Janet M. Thornton, Christine A. Orengo: A practical and robust sequence search strategy for structural genomics target selection. Bioinformatics 20(14): 2288-2295 (2004)
20 Craig T. Porter, Gail J. Bartlett, Janet M. Thornton: The Catalytic Site Atlas: a resource of catalytic sites and residues identified in enzymes using structural data. Nucleic Acids Research 32(Database-Issue): 129-133 (2004)
19 Janet M. Thornton: The proteome and the metabolome. ECCB 2003: 237
18 Jonathan A. Barker, Janet M. Thornton: An algorithm for constraint-based structural template matching: application to 3D templates with statistical analysis. Bioinformatics 19(13): 1644-1649 (2003)
17 Andrew P. Harrison, Frances M. G. Pearl, Ian Sillitoe, Tim Slidel, Richard Mott, Janet M. Thornton, Christine A. Orengo: Recognizing the fold of a protein structure. Bioinformatics 19(14): 1748-1759 (2003)
16 Frances M. G. Pearl, C. F. Bennett, James E. Bray, Andrew P. Harrison, Nigel J. Martin, Adrian J. Shepherd, Ian Sillitoe, Janet M. Thornton, Christine A. Orengo: The CATH database: an extended protein family resource for structural and functional genomics. Nucleic Acids Research 31(1): 452-455 (2003)
15 Daniel W. A. Buchan, Stuart C. G. Rison, James E. Bray, David Lee, Frances M. G. Pearl, Janet M. Thornton, Christine A. Orengo: Gene3D: structural assignments for the biologist and bioinformaticist alike. Nucleic Acids Research 31(1): 469-473 (2003)
14EEDavid Gilbert, David R. Westhead, Juris Viksna, Janet M. Thornton: A Computer System to Perform Structure Comparison using Representations of Protein Structure. Computers & Chemistry 26(1): 23-30 (2002)
13EEIrene Nobeli, John B. O. Mitchell, Alexander Alex, Janet M. Thornton: Evaluation of a knowledge-based potential of mean force for scoring docked protein-ligand complexes. Journal of Computational Chemistry 22(7): 673-688 (2001)
12 Frances M. G. Pearl, Nigel J. Martin, James E. Bray, Daniel W. A. Buchan, Andrew P. Harrison, David Lee, Gabrielle A. Reeves, Adrian J. Shepherd, Ian Sillitoe, Annabel E. Todd, Janet M. Thornton, Christine A. Orengo: A rapid classification protocol for the CATH Domain Database to support structural genomics. Nucleic Acids Research 29(1): 223-227 (2001)
11 Nicholas M. Luscombe, Roman A. Laskowski, Janet M. Thornton: Amino acid?base interactions: a three-dimensional analysis of protein?DNA interactions at an atomic level. Nucleic Acids Research 29(13): 2860-2874 (2001)
10 David Gilbert, David R. Westhead, Janet M. Thornton, Karine Yvon: Une technique déclarative pour filtrer des motifs topologiques de protéines. JFPLC 2000: 165-
9 Frances M. G. Pearl, David Lee, James E. Bray, Ian Sillitoe, Annabel E. Todd, Andrew P. Harrison, Janet M. Thornton, Christine A. Orengo: Assigning genomic sequences to CATH. Nucleic Acids Research 28(1): 277-282 (2000)
8 David Gilbert, David R. Westhead, N. Nagano, Janet M. Thornton: Motif-based searching in TOPS protein topology databases. Bioinformatics 15(4): 317-326 (1999)
7EEJohn B. O. Mitchell, Roman A. Laskowski, Alexander Alex, Janet M. Thornton: BLEEP - potential of mean force describing protein-ligand interactions: I. Generating potential. Journal of Computational Chemistry 20(11): 1165-1176 (1999)
6EEJohn B. O. Mitchell, Roman A. Laskowski, Alexander Alex, Mark J. Forster, Janet M. Thornton: BLEEP - potential of mean force describing protein-ligand interactions: II. Calculation of binding energies and comparison with experimental data. Journal of Computational Chemistry 20(11): 1177-1185 (1999)
5 Christine A. Orengo, Frances M. G. Pearl, James E. Bray, Annabel E. Todd, A. C. Martin, Loredana Lo Conte, Janet M. Thornton: The CATH Database provides insights into protein structure/function relationships. Nucleic Acids Research 27(1): 275-279 (1999)
4 Janet M. Thornton, Andrew C. R. Martin, Christine A. Orengo, Duncan Milburn, Roman A. Laskowski: [Invited Lecture] Protein Folds and Functions. German Conference on Bioinformatics 1998
3EEFabio Zuccotto, Andrew C. R. Martin, Roman A. Laskowski, Janet M. Thornton, Ian H. Gilbert: Dihydrofolate reductase: A potential drug target in trypanosomes and leishmania. Journal of Computer-Aided Molecular Design 12(3): 241-257 (1998)
2 David T. Jones, Janet M. Thornton: Protein fold recognition. Journal of Computer-Aided Molecular Design 7(4): 439-456 (1993)
1 David T. Jones, William R. Taylor, Janet M. Thornton: The rapid generation of mutation data matrices from protein sequences. Computer Applications in the Biosciences 8(3): 275-282 (1992)

Coauthor Index

1Sarah Addou [31] [37]
2Adrian Akpor [31]
3Bissan Al-Lazikani [25]
4Alexander Alex [6] [7] [13]
5Abdellah Allali-Hassani [38]
6Daniel E. Almonacid [32] [36]
7Claudia Andreini [45]
8Cheryl H. Arrowsmith [38]
9Jonathan A. Barker [18] [27]
10Gail J. Bartlett [20] [32] [36]
11Matthew Bashton [40]
12C. F. Bennett [16]
13Christopher Bennett [31]
14Ivano Bertini [45]
15James E. Bray [5] [9] [12] [15] [16] [21]
16Catherine Brooksbank [24] [26] [29]
17Daniel W. A. Buchan [12] [15]
18Graham Cameron [29]
19Gabriele Cavallaro [45]
20Victor V. Chistyakov [30]
21Loredana Lo Conte [5]
22Alison L. Cuff [37] [43]
23Timothy Dallman [31] [37]
24Mark Dibley [31] [37]
25Ilhem Diboun [31]
26Ludmila Dombrovsky [38]
27Aled M. Edwards [21] [38]
28Karen Eilbeck [41]
29Carles Ferrer-Costa [33]
30Mark J. Forster [6]
31Richard Garratt [43]
32Richard A. George [25]
33David Gilbert (David R. Gilbert) [8] [10] [14] [24] [26]
34Ian H. Gilbert [3]
35Alastair Grant [23] [31]
36Lesley H. Greene [37]
37Midori A. Harris [41]
38Andrew P. Harrison [9] [12] [16] [17] [31]
39Henning Hermjakob [41]
40Gemma L. Holliday [32] [36] [45]
41Tim J. P. Hubbard [41]
42Rafael C. Jimenez [41]
43Caroline E. Johnston [31]
44David T. Jones [1] [2]
45Susan Jones [33]
46Abdullah Kahraman [34] [39]
47Nicola D. Kerrison [35]
48Natalja Kurbatova [42]
49Roman A. Laskowski [3] [4] [6] [7] [11] [28] [30] [39] [44]
50David Lee [9] [12] [15] [31]
51Tony Lewis [43]
52Tony E. Lewis [31] [37]
53Steven J. Lingard [35]
54Stefano Lise [31]
55Nicholas M. Luscombe [11]
56Michele Magrane [41]
57Michael Maibaum [31]
58Russell L. Marsden [21] [31]
59A. C. Martin [5]
60Andrew C. R. Martin [3] [4]
61Nigel J. Martin [12] [16]
62Duncan Milburn [4]
63John B. O. Mitchell [6] [7] [13] [32] [36]
64Luisa Montecchi-Palazzi [41]
65Richard J. Morris [34] [38] [39]
66Richard Mott [17]
67Peter Murray-Rust [32] [36]
68N. Nagano [8]
69Rafael Najmanovich [34] [38] [42]
70Rekha Nambudiry [37]
71Irene Nobeli [13] [40]
72Noel M. O'Boyle [32] [36]
73Claire O'Donovan [41]
74Sandra E. Orchard [41]
75Christine A. Orengo [4] [5] [9] [12] [15] [16] [17] [21] [23] [31] [37] [43]
76Patricia W. Pan [38]
77Linda Partridge [35]
78Frances M. G. Pearl [5] [9] [12] [15] [16] [17] [31] [37]
79Alexander N. Plotnikov [38]
80Craig T. Porter [20]
81Andreas Prlic [41]
82Juan Garcia Ranea [23]
83Oliver Redfern [31] [37] [43]
84Gabrielle A. Reeves [12] [31] [41]
85Adam Reid [37]
86Stuart C. G. Rison [15] [21]
87Alexei Savchenko [21]
88Colin Selman [35]
89H. P. Shanahan [22] [33]
90Adrian J. Shepherd [12] [16]
91Antonio Sillero [31]
92Ian Sillitoe [9] [12] [16] [17] [31] [37] [43]
93Tim Slidel [17]
94Ruth V. Spriggs [25]
95Mark B. Swindells [25]
96David Talavera [44]
97William R. Taylor [1]
98Annabel E. Todd [5] [9] [12] [31]
99James W. Torrance [36]
100Masoud Vedadi [38]
101Juris Viksna [14]
102James D. Watson [28]
103David R. Westhead [8] [10] [14]
104Dominic J. Withers [35]
105Corin Yeats [37]
106Karine Yvon [10]
107Fabio Zuccotto [3]

Colors in the list of coauthors

Copyright © Tue Nov 3 08:52:44 2009 by Michael Ley (ley@uni-trier.de)