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Gary D. Stormo Vis

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*2008
44EEJiajian Liu, Gary D. Stormo: Context-dependent DNA recognition code for C2H2 zinc-finger transcription factors. Bioinformatics 24(17): 1850-1857 (2008)
2007
43EEMartha L. Bulyk, Alexander J. Hartemink, Ernest Fraenkel, Gary D. Stormo: Session Introduction. Pacific Symposium on Biocomputing 2007: 470-471
42EEXing Xu, Yongmei Ji, Gary D. Stormo: RNA Sampler: a new sampling based algorithm for common RNA secondary structure prediction and structural alignment. Bioinformatics 23(15): 1883-1891 (2007)
41EEYiyong Zhou, Corentin Cras-Méneur, Mitsuru Ohsugi, Gary D. Stormo, M. Alan Permutt: A global approach to identify differentially expressed genes in cDNA (two-color) microarray experiments. Bioinformatics 23(16): 2073-2079 (2007)
40EELi-Wei Chang, Burr R. Fontaine, Gary D. Stormo, Rakesh Nagarajan: PAP: a comprehensive workbench for mammalian transcriptional regulatory sequence analysis. Nucleic Acids Research 35(Web-Server-Issue): 238-244 (2007)
2006
39EEKenzie D. MacIsaac, Ting Wang, D. Benjamin Gordon, David K. Gifford, Gary D. Stormo, Ernest Fraenkel: An improved map of conserved regulatory sites for Saccharomyces cerevisiae. BMC Bioinformatics 7: 113 (2006)
38EERitesh Agrawal, Gary D. Stormo: Using mRNAs lengths to accurately predict the alternatively spliced gene products in Caenorhabditis elegans. Bioinformatics 22(10): 1239-1244 (2006)
2005
37EEJiajian Liu, Gary D. Stormo: Quantitative analysis of EGR proteins binding to DNA: assessing additivity in both the binding site and the protein. BMC Bioinformatics 6: 176 (2005)
36EEJin Billy Li, Miao Zhang, Susan K. Dutcher, Gary D. Stormo: Procom: a web-based tool to compare multiple eukaryotic proteomes. Bioinformatics 21(8): 1693-1694 (2005)
35EEJakob Hull Havgaard, Rune B. Lyngsø, Gary D. Stormo, Jan Gorodkin: Pairwise local structural alignment of RNA sequences with sequence similarity less than 40%. Bioinformatics 21(9): 1815-1824 (2005)
34EEChristopher T. Workman, Yutong Yin, David L. Corcoran, Trey Ideker, Gary D. Stormo, Panayiotis V. Benos: enoLOGOS: a versatile web tool for energy normalized sequence logos. Nucleic Acids Research 33(Web-Server-Issue): 389-392 (2005)
2004
33 Jianhua Ruan, Gary D. Stormo, Weixiong Zhang: An Iterated loop matching approach to the prediction of RNA secondary structures with pseudoknots. Bioinformatics 20(1): 58-66 (2004)
32EEYongmei Ji, Xing Xu, Gary D. Stormo: A graph theoretical approach for predicting common RNA secondary structure motifs including pseudoknots in unaligned sequences. Bioinformatics 20(10): 1603-1611 (2004)
31 Jianhua Ruan, Gary D. Stormo, Weixiong Zhang: ILM: a web server for predicting RNA secondary structures with pseudoknots. Nucleic Acids Research 32(Web-Server-Issue): 146-149 (2004)
2003
30EEJianhua Ruan, Gary D. Stormo, Weixiong Zhang: An Iterative Loop Matching Approach to the Prediction of RNA Secondary Stru. CSB 2003: 519-520
29EERichard Souvenir, Jeremy Buhler, Gary D. Stormo, Weixiong Zhang: Selecting Degenerate Multiplex PCR Primers. WABI 2003: 512-526
28 Ting Wang, Gary D. Stormo: Combining phylogenetic data with co-regulated genes to identify regulatory motifs. Bioinformatics 19(18): 2369-2380 (2003)
2002
27 Gary D. Stormo: Specificity of Protein-DNA Interactions. Gene Regulations and Metabolism 2002: 87-101
26EED. Guhathakurta, L. A. Schriefer, M. C. Hresko, R. H. Waterston, Gary D. Stormo: Identifying Muscle Regulatory Elements and Genes in the Nematode Caenorhabditis Elegans. Pacific Symposium on Biocomputing 2002: 425-436
2001
25EEPanayiotis V. Benos, Alan S. Lapedes, D. S. Fields, Gary D. Stormo: SAMIE: Statistical Algorithm for Modeling Interaction Energies. Pacific Symposium on Biocomputing 2001: 115-126
24 Mark Borodovsky, Eugene V. Koonin, Chris Burge, James W. Fickett, John Logsdon, Andrej Sali, Gary D. Stormo, Igor B. Zhulin: The Third Georgia Tech-Emory International Conference on Bioinformatics: In Silico Biology; Bioinformatics After Human Genome (November 15-18, 2001, Atlanta, Georgia, USA). Bioinformatics 17(10): 859-861 (2001)
23 Fugen Li, Gary D. Stormo: Selection of optimal DNA oligos for gene expression arrays. Bioinformatics 17(11): 1067-1076 (2001)
22 Debraj Guha Thakurta, Gary D. Stormo: Identifying target sites for cooperatively binding factors. Bioinformatics 17(7): 608-621 (2001)
2000
21 Fugen Li, Gary D. Stormo: Selecting Optimum DNA Oligos for Microarrays. BIBE 2000: 200-207
20 Gary D. Stormo: DNA binding sites: representation and discovery. Bioinformatics 16(1): 16-23 (2000)
19 Viatcheslav R. Akmaev, Scott T. Kelley, Gary D. Stormo: Phylogenetically enhanced statistical tools for RNA structure prediction. Bioinformatics 16(6): 501-512 (2000)
1999
18 Viatcheslav R. Akmaev, Scott T. Kelley, Gary D. Stormo: A Phylogenetic Approach to RNA Structure Prediction. ISMB 1999: 10-17
17EED. C. Weaver, Christopher T. Workman, Gary D. Stormo: Modeling Regulatory Networks with Weight Matrices. Pacific Symposium on Biocomputing 1999: 112-123
16 G. Z. Hertz, Gary D. Stormo: Identifying DNA and protein patterns with statistically significant alignments of multiple sequences. Bioinformatics 15(7): 563-577 (1999)
1998
15 Samuel Levy, L. Compagnoni, Eugene W. Myers, Gary D. Stormo: Xlandscape: the graphical display of word frequencies in sequences. Bioinformatics 14(1): 74-80 (1998)
14 Jack E. Tabaska, Robert B. Cary, Harold N. Gabow, Gary D. Stormo: An RNA folding method capable of identifying pseudoknots and base triples. Bioinformatics 14(8): 691-699 (1998)
1997
13 Jan Gorodkin, Laurie J. Heyer, Gary D. Stormo: Finding Common Sequence and Structure Motifs in a Set of RNA Sequences. ISMB 1997: 120-123
12 Jack E. Tabaska, Gary D. Stormo: Automated Alignment of RNA Sequences to Pseudoknotted Structures. ISMB 1997: 311-318
11 Samuel Levy, Gary D. Stormo: DNA Sequence Classification Using DAWGs. Structures in Logic and Computer Science 1997: 339-352
10 Q. K. Chen, G. Z. Hertz, Gary D. Stormo: PromFD 1.0: a computer program that predicts eukaryotic pol II promoters using strings and IMD matrices. Computer Applications in the Biosciences 13(1): 29-35 (1997)
9 Jan Gorodkin, Laurie J. Heyer, Søren Brunak, Gary D. Stormo: Displaying the information contents of structural RNA alignments: the structure logos. Computer Applications in the Biosciences 13(6): 583-586 (1997)
1995
8 Robert B. Cary, Gary D. Stormo: Graph-Theoretic Approach to RNA Modeling Using Comparative Data. ISMB 1995: 75-80
7 Q. K. Chen, G. Z. Hertz, Gary D. Stormo: MATRIX SEARCH 1.0: a computer program that scans DNA sequences for transcriptional elements using a database of weight matrices. Computer Applications in the Biosciences 11(5): 563-566 (1995)
1994
6 John M. Heumann, Alan S. Lapedes, Gary D. Stormo: Neural Networks for Determining Protein Specificity and Multiple Alignment of Binding Sites. ISMB 1994: 188-194
5 Gary D. Stormo, David Haussler: Optimally Parsing a Sequence into Different Classes Based on Multiple Types of Evidence. ISMB 1994: 369-375
1993
4 D. S. Prestridge, Gary D. Stormo: SIGNAL SCAN 3.0: new database and program features. Computer Applications in the Biosciences 9(1): 113-115 (1993)
1990
3 G. Z. Hertz, G. W. Hartzell III, Gary D. Stormo: Identification of consensus patterns in unaligned DNA sequences known to be functionally related. Computer Applications in the Biosciences 6(2): 81-92 (1990)
1986
2 B. Clift, David Haussler, Ross M. McConnell, Thomas D. Schneider, Gary D. Stormo: Sequence landscapes. Nucleic Acids Research 14(1): 141-158 (1986)
1984
1 Thomas D. Schneider, Gary D. Stormo, M. A. Yarus, L. Gold: Delila system tools. Nucleic Acids Research 12(1): 129-140 (1984)

Coauthor Index

1Ritesh Agrawal [38]
2Viatcheslav R. Akmaev [18] [19]
3Panayiotis V. Benos [25] [34]
4Mark Borodovsky [24]
5Søren Brunak [9]
6Jeremy Buhler (Jeremy D. Buhler) [29]
7Martha L. Bulyk [43]
8Chris Burge [24]
9Robert B. Cary [8] [14]
10Li-Wei Chang [40]
11Q. K. Chen [7] [10]
12B. Clift [2]
13L. Compagnoni [15]
14David L. Corcoran [34]
15Corentin Cras-Méneur [41]
16Susan K. Dutcher [36]
17James W. Fickett [24]
18D. S. Fields [25]
19Burr R. Fontaine [40]
20Ernest Fraenkel [39] [43]
21Harold N. Gabow [14]
22David K. Gifford [39]
23L. Gold [1]
24D. Benjamin Gordon [39]
25Jan Gorodkin [9] [13] [35]
26D. Guhathakurta [26]
27Alexander J. Hartemink [43]
28G. W. Hartzell III [3]
29David Haussler [2] [5]
30Jakob Hull Havgaard [35]
31G. Z. Hertz [3] [7] [10] [16]
32John M. Heumann [6]
33Laurie J. Heyer [9] [13]
34M. C. Hresko [26]
35Trey Ideker [34]
36Yongmei Ji [32] [42]
37Scott T. Kelley [18] [19]
38Eugene V. Koonin [24]
39Alan S. Lapedes [6] [25]
40Samuel Levy [11] [15]
41Fugen Li [21] [23]
42Jin Billy Li [36]
43Jiajian Liu [37] [44]
44John Logsdon [24]
45Rune B. Lyngsø [35]
46Kenzie D. MacIsaac [39]
47Ross M. McConnell [2]
48Eugene W. Myers (Gene Myers) [15]
49Rakesh Nagarajan [40]
50Mitsuru Ohsugi [41]
51M. Alan Permutt [41]
52D. S. Prestridge [4]
53Jianhua Ruan [30] [31] [33]
54Andrej Sali [24]
55Thomas D. Schneider [1] [2]
56L. A. Schriefer [26]
57Richard Souvenir [29]
58Jack E. Tabaska [12] [14]
59Debraj Guha Thakurta [22]
60Ting Wang [28] [39]
61R. H. Waterston [26]
62D. C. Weaver [17]
63Christopher T. Workman [17] [34]
64Xing Xu [32] [42]
65M. A. Yarus [1]
66Yutong Yin [34]
67Miao Zhang [36]
68Weixiong Zhang [29] [30] [31] [33]
69Yiyong Zhou [41]
70Igor B. Zhulin [24]

Colors in the list of coauthors

Copyright © Tue Nov 3 08:52:44 2009 by Michael Ley (ley@uni-trier.de)