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Christian J. Stoeckert Jr. Vis

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*2009
25EECristina Aurrecoechea, John Brestelli, Brian P. Brunk, Jane M. Carlton, Jennifer Dommer, Steve Fischer, Bindu Gajria, Xin Gao, Alan Gingle, Gregory R. Grant, Omar S. Harb, Mark Heiges, Frank Innamorato, John Iodice, Jessica C. Kissinger, Eileen Kraemer, Wei Li, John A. Miller, Hilary G. Morrison, Vishal Nayak, Cary Pennington, Deborah F. Pinney, David S. Roos, Chris Ross, Christian J. Stoeckert Jr., Steven Sullivan, Charles Treatman, Haiming Wang: GiardiaDB and TrichDB: integrated genomic resources for the eukaryotic protist pathogens Giardia lamblia and Trichomonas vaginalis. Nucleic Acids Research 37(Database-Issue): 526-530 (2009)
24EECristina Aurrecoechea, John Brestelli, Brian P. Brunk, Jennifer Dommer, Steve Fischer, Bindu Gajria, Xin Gao, Alan Gingle, Gregory R. Grant, Omar S. Harb, Mark Heiges, Frank Innamorato, John Iodice, Jessica C. Kissinger, Eileen Kraemer, Wei Li, John A. Miller, Vishal Nayak, Cary Pennington, Deborah F. Pinney, David S. Roos, Chris Ross, Christian J. Stoeckert Jr., Charles Treatman, Haiming Wang: PlasmoDB: a functional genomic database for malaria parasites. Nucleic Acids Research 37(Database-Issue): 539-543 (2009)
2008
23EEBindu Gajria, Amit Bahl, John Brestelli, Jennifer Dommer, Steve Fischer, Xin Gao, Mark Heiges, John Iodice, Jessica C. Kissinger, Aaron J. Mackey, Deborah F. Pinney, David S. Roos, Christian J. Stoeckert Jr., Haiming Wang, Brian P. Brunk: ToxoDB: an integrated Toxoplasma gondii database resource. Nucleic Acids Research 36(Database-Issue): 553-556 (2008)
2007
22EEJonathan Schug, Max Mintz, Christian J. Stoeckert Jr.: Data Integration and Pattern-Finding in Biological Sequence with TESS's Annotation Grammar and Extraction Language (AnGEL). DILS 2007: 188-203
21EECristina Aurrecoechea, Mark Heiges, Haiming Wang, Zhiming Wang, Steve Fischer, Philippa Rhodes, John A. Miller, Eileen Kraemer, Christian J. Stoeckert Jr., David S. Roos, Jessica C. Kissinger: ApiDB: integrated resources for the apicomplexan bioinformatics resource center. Nucleic Acids Research 35(Database-Issue): 427-430 (2007)
20EEJoan M. Mazzarelli, John Brestelli, Regina K. Gorski, Junmin Liu, Elisabetta Manduchi, Deborah F. Pinney, Jonathan Schug, Peter White, Klaus H. Kaestner, Christian J. Stoeckert Jr.: EPConDB: a web resource for gene expression related to pancreatic development, beta-cell function and diabetes. Nucleic Acids Research 35(Database-Issue): 751-755 (2007)
2006
19EEPatricia L. Whetzel, Helen E. Parkinson, Helen C. Causton, Liju Fan, Jennifer Fostel, Gilberto Fragoso, Laurence Game, Mervi Heiskanen, Norman Morrison, Philippe Rocca-Serra, Susanna-Assunta Sansone, Chris J. Taylor, Joseph White, Christian J. Stoeckert Jr.: The MGED Ontology: a resource for semantics-based description of microarray experiments. Bioinformatics 22(7): 866-873 (2006)
18EEFeng Chen, Aaron J. Mackey, Christian J. Stoeckert Jr., David S. Roos: OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups. Nucleic Acids Research 34(Database-Issue): 363-368 (2006)
2005
17EEGregory R. Grant, Junmin Liu, Christian J. Stoeckert Jr.: A practical false discovery rate approach to identifying patterns of differential expression in microarray data. Bioinformatics 21(11): 2684-2690 (2005)
2004
16EEAndrew Jones, Ela Hunt, Jonathan M. Wastling, Angel Pizarro, Christian J. Stoeckert Jr.: An object model and database for functional genomics. Bioinformatics 20(10): 1583-1590 (2004)
15EEElisabetta Manduchi, Gregory R. Grant, H. He, Junmin Liu, Matthew D. Mailman, A. D. Pizarro, Patricia L. Whetzel, Christian J. Stoeckert Jr.: RAD and the RAD Study-Annotator: an approach to collection, organization and exchange of all relevant information for high-throughput gene expression studies. Bioinformatics 20(4): (2004)
14 Li Li, Jonathan Crabtree, Steve Fischer, Deborah F. Pinney, Christian J. Stoeckert Jr., L. David Sibley, David S. Roos: ApiEST-DB: analyzing clustered EST data of the apicomplexan parasites. Nucleic Acids Research 32(Database-Issue): 326-328 (2004)
2003
13 Amit Bahl, Brian P. Brunk, Jonathan Crabtree, Martin J. Fraunholz, Bindu Gajria, Gregory R. Grant, Hagai Ginsburg, Dinesh Gupta, Jessica C. Kissinger, Philip Labo, Li Li, Matthew D. Mailman, Arthur J. Milgram, David S. Pearson, David S. Roos, Jonathan Schug, Christian J. Stoeckert Jr., Patricia L. Whetzel: PlasmoDB: the Plasmodium genome resource. A database integrating experimental and computational data. Nucleic Acids Research 31(1): 212-215 (2003)
12EEChristian J. Stoeckert Jr.: Common Objects: Think Global, Act Local. OMICS 7(1): 103-104 (2003)
2002
11 Catherine A. Ball, Gavin Sherlock, Helen E. Parkinson, Philippe Rocca-Serra, Catherine Brooksbank, Helen C. Causton, Duccio Cavalieri, Terry Gaasterland, Pascal Hingamp, Frank Holstege, Martin Ringwald, Paul T. Spellman, Christian J. Stoeckert Jr., Jason E. Stewart, Ronald Taylor, Alvis Brazma, John Quackenbush: An open letter to the scientific journals. Bioinformatics 18(11): 1409 (2002)
10EESusan B. Davidson, Christian J. Stoeckert Jr.: In memory of Vadim Aleksandrovich Ratner. In Silico Biology 2: 47 (2002)
9 Amit Bahl, Brian P. Brunk, Ross L. Coppel, Jonathan Crabtree, Sharon J. Diskin, Martin J. Fraunholz, Gregory R. Grant, Dinesh Gupta, Robert L. Huestis, Jessica C. Kissinger, Philip Labo, Li Li, Shannon K. McWeeney, Arthur J. Milgram, David S. Roos, Jonathan Schug, Christian J. Stoeckert Jr.: PlasmoDB: the Plasmodium genome resource. An integrated database providing tools for accessing, analyzing and mapping expression and sequence data (both finished and unfinished). Nucleic Acids Research 30(1): 87-90 (2002)
2001
8 Christian J. Stoeckert Jr., Angel Pizarro, Elisabetta Manduchi, M. Gibson, Brian P. Brunk, Jonathan Crabtree, Jonathan Schug, Shai Shen-Orr, G. Christian Overton: A relational schema for both array-based and SAGE gene expression experiments. Bioinformatics 17(4): 300-308 (2001)
7EESusan B. Davidson, Jonathan Crabtree, Brian P. Brunk, Jonathan Schug, Val Tannen, G. Christian Overton, Christian J. Stoeckert Jr.: K2/Kleisli and GUS: Experiments in integrated access to genomic data sources. IBM Systems Journal 40(2): 512-531 (2001)
2000
6 Elisabetta Manduchi, Gregory R. Grant, Steven E. McKenzie, G. Christian Overton, Saul Surrey, Christian J. Stoeckert Jr.: Generation of patterns from gene expression data by assigning confidence to differentially expressed genes. Bioinformatics 16(8): 685-698 (2000)
5EESusan B. Davidson, Christian J. Stoeckert Jr.: In Memory of Chris Overton. In Silico Biology 1: 21 (2000)
1999
4 Christian J. Stoeckert Jr., Fidel Salas, Brian P. Brunk, G. Christian Overton: EpoDB: a prototype database for the analysis of genes expressed during vertebrate erythropoiesis. Nucleic Acids Research 27(1): 200-203 (1999)
1998
3 Fidel Salas, Juergen Haas, Brian P. Brunk, Christian J. Stoeckert Jr., G. Christian Overton: EpoDB: a database of genes expressed during vertebrate erythropoiesis. Nucleic Acids Research 26(1): 288-289 (1998)
1996
2 Fidel Salas, G. Christian Overton, Juergen Haas, Christian J. Stoeckert Jr.: EpoDB: An Erythropoiesis Gene Expression Database/Knowledge Base. German Conference on Bioinformatics 1996: 40-45
1 Fidel Salas, Juergen Haas, G. Christian Overton, Christian J. Stoeckert Jr.: EpoDB: An Erythropoiesis Gene Expression Database in Progress. German Conference on Bioinformatics - Selected Papers 1996: 52-61

Coauthor Index

1Cristina Aurrecoechea [21] [24] [25]
2Amit Bahl [9] [13] [23]
3Catherine A. Ball [11]
4Alvis Brazma [11]
5John Brestelli [20] [23] [24] [25]
6Catherine Brooksbank [11]
7Brian P. Brunk [3] [4] [7] [8] [9] [13] [23] [24] [25]
8Jane M. Carlton [25]
9Helen C. Causton [11] [19]
10Duccio Cavalieri [11]
11Feng Chen [18]
12Ross L. Coppel [9]
13Jonathan Crabtree [7] [8] [9] [13] [14]
14Susan B. Davidson [5] [7] [10]
15Sharon J. Diskin [9]
16Jennifer Dommer [23] [24] [25]
17Liju Fan [19]
18Steve Fischer [14] [21] [23] [24] [25]
19Jennifer Fostel [19]
20Gilberto Fragoso [19]
21Martin J. Fraunholz [9] [13]
22Terry Gaasterland [11]
23Bindu Gajria [13] [23] [24] [25]
24Laurence Game [19]
25Xin Gao [23] [24] [25]
26M. Gibson [8]
27Alan Gingle [24] [25]
28Hagai Ginsburg [13]
29Regina K. Gorski [20]
30Gregory R. Grant [6] [9] [13] [15] [17] [24] [25]
31Dinesh Gupta [9] [13]
32Juergen Haas [1] [2] [3]
33Omar S. Harb [24] [25]
34H. He [15]
35Mark Heiges [21] [23] [24] [25]
36Mervi Heiskanen [19]
37Pascal Hingamp [11]
38Frank Holstege [11]
39Robert L. Huestis [9]
40Ela Hunt [16]
41Frank Innamorato [24] [25]
42John Iodice [23] [24] [25]
43Andrew Jones [16]
44Klaus H. Kaestner [20]
45Jessica C. Kissinger [9] [13] [21] [23] [24] [25]
46Eileen Kraemer [21] [24] [25]
47Philip Labo [9] [13]
48Li Li [9] [13] [14]
49Wei Li [24] [25]
50Junmin Liu [15] [17] [20]
51Aaron J. Mackey [18] [23]
52Matthew D. Mailman [13] [15]
53Elisabetta Manduchi [6] [8] [15] [20]
54Joan M. Mazzarelli [20]
55Steven E. McKenzie [6]
56Shannon K. McWeeney [9]
57Arthur J. Milgram [9] [13]
58John A. Miller [21] [24] [25]
59Max Mintz [22]
60Hilary G. Morrison [25]
61Norman Morrison [19]
62Vishal Nayak [24] [25]
63G. Christian Overton [1] [2] [3] [4] [6] [7] [8]
64Helen E. Parkinson [11] [19]
65David S. Pearson [13]
66Cary Pennington [24] [25]
67Deborah F. Pinney [14] [20] [23] [24] [25]
68A. D. Pizarro [15]
69Angel Pizarro [8] [16]
70John Quackenbush [11]
71Philippa Rhodes [21]
72Martin Ringwald [11]
73Philippe Rocca-Serra [11] [19]
74David S. Roos [9] [13] [14] [18] [21] [23] [24] [25]
75Chris Ross [24] [25]
76Fidel Salas [1] [2] [3] [4]
77Susanna-Assunta Sansone [19]
78Jonathan Schug [7] [8] [9] [13] [20] [22]
79Shai Shen-Orr [8]
80Gavin Sherlock [11]
81L. David Sibley [14]
82Paul T. Spellman [11]
83Jason E. Stewart [11]
84Steven Sullivan [25]
85Saul Surrey [6]
86Val Tannen (Valeriu Breazu, Val Breazu-Tannen) [7]
87Ronald Taylor [11]
88Chris J. Taylor [19]
89Charles Treatman [24] [25]
90Haiming Wang [21] [23] [24] [25]
91Zhiming Wang [21]
92Jonathan M. Wastling [16]
93Patricia L. Whetzel [13] [15] [19]
94Joseph White [19]
95Peter White [20]

Copyright © Tue Nov 3 08:52:44 2009 by Michael Ley (ley@uni-trier.de)