dblp.uni-trier.dewww.uni-trier.de

Peter F. Stadler Vis

List of publications from the DBLP Bibliography Server - FAQ
Coauthor Index - Ask others: ACM DL/Guide - CiteSeerX - CSB - MetaPress - Google - Bing - Yahoo

*2009
77EEAndreas Heffel, Sonja J. Prohaska, Peter F. Stadler, Gerhard Kauer, Jens-Peer Kuska: Automatic Classification of Embryonic Fruit Fly Gene Expression Patterns. Bildverarbeitung für die Medizin 2009: 415-419
76EEMarkus Riester, Peter F. Stadler, Konstantin Klemm: FRANz: reconstruction of wild multi-generation pedigrees. Bioinformatics 25(16): 2134-2139 (2009)
75EEDavid Langenberger, Clara Bermudez-Santana, Jana Hertel, Steve Hoffmann, Philipp Khaitovich, Peter F. Stadler: Evidence for human microRNA-offset RNAs in small RNA sequencing data. Bioinformatics 25(18): 2298-2301 (2009)
74EEFenix W. D. Huang, Jing Qin, Christian M. Reidys, Peter F. Stadler: Partition function and base pairing probabilities for RNA-RNA interaction prediction. Bioinformatics 25(20): 2646-2654 (2009)
73EEBogumil Kaczkowski, Elfar Torarinsson, Kristin Reiche, Jakob Hull Havgaard, Peter F. Stadler, Jan Gorodkin: Structural profiles of human miRNA families from pairwise clustering. Bioinformatics 25(3): 291-294 (2009)
72EEAndreas W. M. Dress, Bülent Karasözen, Peter F. Stadler, Gerhard-Wilhelm Weber: Preface. Discrete Applied Mathematics 157(10): 2217-2220 (2009)
71EEKonstantin Klemm, Peter F. Stadler: A note on fundamental, non-fundamental, and robust cycle bases. Discrete Applied Mathematics 157(10): 2432-2438 (2009)
70EEAxel Mosig, Türker Bíyíkoglu, Sonja J. Prohaska, Peter F. Stadler: Discovering cis-regulatory modules by optimizing barbecues. Discrete Applied Mathematics 157(10): 2458-2468 (2009)
69EEFrank Jühling, Mario Mörl, Roland K. Hartmann, Mathias Sprinzl, Peter F. Stadler, Joern Pütz: tRNAdb 2009: compilation of tRNA sequences and tRNA genes. Nucleic Acids Research 37(Database-Issue): 159-162 (2009)
2008
68EEUlrike Mückstein, Hakim Tafer, Stephan H. F. Bernhart, Maribel Hernandez-Rosales, Jörg Vogel, Peter F. Stadler, Ivo L. Hofacker: Translational Control by RNA-RNA Interaction: Improved Computation of RNA-RNA Binding Thermodynamics. BIRD 2008: 114-127
67 Markus Riester, Peter F. Stadler, Konstantin Klemm: FRANz: Fast Reconstruction of Wild Pedigrees. German Conference on Bioinformatics 2008: 168-177
66EEAndreas Heffel, Peter F. Stadler, Sonja J. Prohaska, Gerhard Kauer, Jens-Peer Kuska: Process flow for classification and clustering of fruit fly gene expression patterns. ICIP 2008: 721-724
65EEAndreas W. M. Dress, Christoph Flamm, Guido Fritzsch, Stefan Grünewald, Matthias Kruspe, Sonja J. Prohaska, Peter F. Stadler: Noisy: Identification of problematic columns in multiple sequence alignments. Algorithms for Molecular Biology 3: (2008)
64EEStephan H. F. Bernhart, Ivo L. Hofacker, Sebastian Will, Andreas R. Gruber, Peter F. Stadler: RNAalifold: improved consensus structure prediction for RNA alignments. BMC Bioinformatics 9: (2008)
63EEJörg Lehmann, Peter F. Stadler, Sonja J. Prohaska: SynBlast: Assisting the analysis of conserved synteny information. BMC Bioinformatics 9: (2008)
62EEJana Hertel, Ivo L. Hofacker, Peter F. Stadler: SnoReport: computational identification of snoRNAs with unknown targets. Bioinformatics 24(2): 158-164 (2008)
61EEDominic Rose, Julian Jöris, Jörg Hackermüller, Kristin Reiche, Qiang Li, Peter F. Stadler: Duplicated RNA genes in teleost Fish genomes. J. Bioinformatics and Computational Biology 6(6): 1157-1175 (2008)
2007
60 Christopher R. Stephens, Marc Toussaint, L. Darrell Whitley, Peter F. Stadler: Foundations of Genetic Algorithms, 9th International Workshop, FOGA 2007, Mexico City, Mexico, January 8-11, 2007, Revised Selected Papers Springer 2007
59EEChristoph Flamm, Ivo L. Hofacker, Bärbel M. R. Stadler, Peter F. Stadler: Saddles and Barrier in Landscapes of Generalized Search Operators. FOGA 2007: 194-212
58 Axel Mosig, Peter Menzel, Peter F. Stadler: Tanimoto's Best Barbecue: Discovering Regulatory Modules using Tanimoto Scores. German Conference on Bioinformatics 2007: 68-77
57EEAxel Mosig, Julian J.-L. Chen, Peter F. Stadler: Homology Search with Fragmented Nucleic Acid Sequence Patterns. WABI 2007: 335-345
56EEKristin Reiche, Peter F. Stadler: RNAstrand: reading direction of structured RNAs in multiple sequence alignments. Algorithms for Molecular Biology 2: (2007)
55EEMatthias Kruspe, Peter F. Stadler: Progressive multiple sequence alignments from triplets. BMC Bioinformatics 8: (2007)
54EEMatthias Bernt, Daniel Merkle, Kai Ramsch, Guido Fritzsch, Marleen Perseke, Detlef Bernhard, Martin Schlegel, Peter F. Stadler, Martin Middendorf: CREx: inferring genomic rearrangements based on common intervals. Bioinformatics 23(21): 2957-2958 (2007)
53EEManja Marz, Axel Mosig, Bärbel M. R. Stadler, Peter F. Stadler: U7 snRNAs: A Computational Survey. Genomics, Proteomics & Bioinformatics 5(3-4): 187-195 (2007)
2006
52EEJana Hertel, Peter F. Stadler: Hairpins in a Haystack: recognizing microRNA precursors in comparative genomics data. ISMB (Supplement of Bioinformatics) 2006: 197-202
51EESebastian Potzsch, Gerik Scheuermann, Peter F. Stadler, Michael T. Wolfinger, Christoph Flamm: Visualization of Lattice-Based Protein Folding Simulations. IV 2006: 89-94
50EEBurkhard Morgenstern, Sonja J. Prohaska, Dirk Pöhler, Peter F. Stadler: Multiple sequence alignment with user-defined anchor points. Algorithms for Molecular Biology 1: (2006)
49EEBurkhard Morgenstern, Peter F. Stadler: New journal: Algorithms for Molecular Biology. Algorithms for Molecular Biology 1: (2006)
48EEStephan H. F. Bernhart, Hakim Tafer, Ulrike Mückstein, Christoph Flamm, Peter F. Stadler, Ivo L. Hofacker: Partition function and base pairing probabilities of RNA heterodimers. Algorithms for Molecular Biology 1: (2006)
47EEChristian V. Forst, Christoph Flamm, Ivo L. Hofacker, Peter F. Stadler: Algebraic comparison of metabolic networks, phylogenetic inference, and metabolic innovation. BMC Bioinformatics 7: 67 (2006)
46EEIvo L. Hofacker, Peter F. Stadler: Memory efficient folding algorithms for circular RNA secondary structures. Bioinformatics 22(10): 1172-1176 (2006)
45EEUlrike Mückstein, Hakim Tafer, Jörg Hackermüller, Stephan H. F. Bernhart, Peter F. Stadler, Ivo L. Hofacker: Thermodynamics of RNA-RNA binding. Bioinformatics 22(10): 1177-1182 (2006)
44EEStephan H. F. Bernhart, Ivo L. Hofacker, Peter F. Stadler: Local RNA base pairing probabilities in large sequences. Bioinformatics 22(5): 614-615 (2006)
43EEAxel Mosig, Katrin Sameith, Peter F. Stadler: Fragrep: An Efficient Search Tool for Fragmented Patterns in Genomic Sequences. Genomics, Proteomics & Bioinformatics 4(1): 56-60 (2006)
42EEChristian Heine, Gerik Scheuermann, Christoph Flamm, Ivo L. Hofacker, Peter F. Stadler: Visualization of Barrier Tree Sequences. IEEE Trans. Vis. Comput. Graph. 12(5): 781-788 (2006)
41EEPaul Wei-Che Hsu, Hsien-Da Huang, Sheng-Da Hsu, Li-Zen Lin, Ann-Ping Tsou, Ching-Ping Tseng, Peter F. Stadler, Stefan Washietl, Ivo L. Hofacker: miRNAMap: genomic maps of microRNA genes and their target genes in mammalian genomes. Nucleic Acids Research 34(Database-Issue): 135-139 (2006)
2005
40EECamille Stephan-Otto Attolini, Peter F. Stadler, Christoph Flamm: CelloS: A Multi-level Approach to Evolutionary Dynamics. ECAL 2005: 500-509
39EEGil Benkö, Christoph Flamm, Peter F. Stadler: Explicit Collision Simulation of Chemical Reactions in a Graph Based Artificial Chemistry. ECAL 2005: 725-733
38EEKristin Missal, Dominic Rose, Peter F. Stadler: Non-coding RNAs in Ciona intestinalis. ECCB/JBI 2005: 78
37 Ivo L. Hofacker, Peter F. Stadler: Memory Efficient Folding Algorithms for Circular RNA Secondary Structures. German Conference on Bioinformatics 2005: 15-25
36 Ulrike Mückstein, Hakim Tafer, Jörg Hackermüller, Stephan H. F. Bernhart, Peter F. Stadler, Ivo L. Hofacker: Thermodynamics of RNA-RNA Binding. German Conference on Bioinformatics 2005: 3-13
35EERoman R. Stocsits, Ivo L. Hofacker, Claudia Fried, Peter F. Stadler: Multiple sequence alignments of partially coding nucleic acid sequences. BMC Bioinformatics 6: 160 (2005)
34EEBurkhard Morgenstern, Nadine Werner, Sonja J. Prohaska, Rasmus Steinkamp, Isabelle Schneider, Amarendran R. Subramanian, Peter F. Stadler, Jan Weyer-Menkhoff: Multiple sequence alignment with user-defined constraints at GOBICS. Bioinformatics 21(7): 1271-1273 (2005)
33EEPetra M. Gleiss, Josef Leydold, Peter F. Stadler: Minimum path bases and relevant paths. Networks 46(3): 119-123 (2005)
2004
32 C. Thurner, Ivo L. Hofacker, Peter F. Stadler: Conserved RNA Pseudoknots. German Conference on Bioinformatics 2004: 207-216
31 Burkhard Morgenstern, Sonja J. Prohaska, Nadine Werner, Jan Weyer-Menkhoff, Isabelle Schneider, Amarendran R. Subramanian, Peter F. Stadler: Multiple sequence alignment with user-defined constraints. German Conference on Bioinformatics 2004: 25-36
30EEIvo L. Hofacker, Peter F. Stadler: The Partition Function Variant of Sankoff's Algorithm. International Conference on Computational Science 2004: 728-735
29EEIvo L. Hofacker, Peter F. Stadler, Roman R. Stocsits: Conserved RNA secondary structures in viral genomes: a survey. Bioinformatics 20(10): 1495-1499 (2004)
28EEIvo L. Hofacker, Stephan H. F. Bernhart, Peter F. Stadler: Alignment of RNA base pairing probability matrices. Bioinformatics 20(14): 2222-2227 (2004)
27EEIvo L. Hofacker, Barbara Priwitzer, Peter F. Stadler: Prediction of locally stable RNA secondary structures for genome-wide surveys. Bioinformatics 20(2): 186-190 (2004)
26EEChristina Witwer, Ivo L. Hofacker, Peter F. Stadler: Prediction of Consensus RNA Secondary Structures Including Pseudoknots. IEEE/ACM Trans. Comput. Biology Bioinform. 1(2): 66-77 (2004)
25EEFranziska Berger, Christoph Flamm, Petra M. Gleiss, Josef Leydold, Peter F. Stadler: Counterexamples in Chemical Ring Perception. Journal of Chemical Information and Modeling 44(2): 323-331 (2004)
24EEClaudia Fried, Wim Hordijk, Sonja J. Prohaska, Claus R. Stadler, Peter F. Stadler: The Footprint Sorting Problem. Journal of Chemical Information and Modeling 44(2): 332-338 (2004)
2003
23EEGil Benkö, Christoph Flamm, Peter F. Stadler: Generic Properties of Chemical Networks: Artificial Chemistry Based on Graph Rewriting. ECAL 2003: 10-19
22 Ingrid G. Abfalter, Christoph Flamm, Peter F. Stadler: Design of multi-stable nucleid acid sequences. German Conference on Bioinformatics 2003: 1-7
21 Ivo L. Hofacker, Peter F. Stadler, Roman R. Stocsits: Conserved RNA secondary structures in viral genomes: A survey. German Conference on Bioinformatics 2003: 57-62
20 Peter F. Stadler, Christoph Flamm: Barrier Trees on Poset-Valued Landscapes. Genetic Programming and Evolvable Machines 4(1): 7-20 (2003)
19EEGil Benkö, Christoph Flamm, Peter F. Stadler: A Graph-Based Toy Model of Chemistry. Journal of Chemical Information and Computer Sciences 43(4): 1085-1093 (2003)
2002
18 Ulrike Mückstein, Ivo L. Hofacker, Peter F. Stadler: Stochastic pairwise alignments. ECCB 2002: 153-160
17EEBärbel M. R. Stadler, Peter F. Stadler: Generalized Topological Spaces in Evolutionary Theory and Combinatorial Chemistry. Journal of Chemical Information and Computer Sciences 42(3): 577-585 (2002)
2000
16 Jan Cupal, Stephan Kopp, Peter F. Stadler: RNA Shape Space Topology. Artificial Life 6(1): 3-23 (2000)
15EEPetra M. Gleiss, Josef Leydold, Peter F. Stadler: Interchangeability of Relevant Cycles in Graphs. Electr. J. Comb. 7: (2000)
14 Martin Fekete, Ivo L. Hofacker, Peter F. Stadler: Prediction of RNA Base Pairing Probabilities on Massively Parallel Computers. Journal of Computational Biology 7(1-2): 171-182 (2000)
1999
13 G. Weberndorfer, Ivo L. Hofacker, Peter F. Stadler: An efficient potential for protein sequence design. German Conference on Bioinformatics 1999: 107-112
12 Roman R. Stocsits, Ivo L. Hofacker, Peter F. Stadler: Conserved secondary structures in hepatitis B virus DNA. German Conference on Bioinformatics 1999: 73-79
11EEIvo L. Hofacker, Peter F. Stadler: Automatic Detection of Conserved Base Pairing Patterns in RNA Virus Genomes. Computers & Chemistry 23(3-4): 401-414 (1999)
1998
10EEIvo L. Hofacker, Peter Schuster, Peter F. Stadler: Combinatorics of RNA Secondary Structures. Discrete Applied Mathematics 88(1-3): 207-237 (1998)
9EEJosef Leydold, Peter F. Stadler: Minimal Cycle Bases of Outerplanar Graphs. Electr. J. Comb. 5: (1998)
1997
8 Jan Cupal, Christoph Flamm, Alexander Renner, Peter F. Stadler: Density of States, Metastable States, and Saddle Points: Exploring the Energy Landscape of an RNA Molecule. ISMB 1997: 88-91
7 Peter F. Stadler, Günter P. Wagner: Algebraic Theory of Recombination Spaces. Evolutionary Computation 5(3): 241-275 (1997)
1996
6 Jan Cupal, Ivo L. Hofacker, Peter F. Stadler: Dynamic Programming Algorithm for the Density of States of RNA Secondary Structures. German Conference on Bioinformatics 1996: 184-186
5 Ivo L. Hofacker, Martijn A. Huynen, Peter F. Stadler, Paul E. Stolorz: Knowledge Discovery in RNA Sequence Families of HIV Using Scalable Computers. KDD 1996: 20-25
4EEChristian M. Reidys, Peter F. Stadler: Bio-molecular Shapes and Algebraic Structures. Computers & Chemistry 20(1): 85-94 (1996)
3 Martijn A. Huynen, Alan S. Perelson, W. A. Vieira, Peter F. Stadler: Base Pairing Probabilities in a Complete HIV-1 RNA. Journal of Computational Biology 3(2): 253-274 (1996)
1995
2EEPeter F. Stadler: Random walks and orthogonal functions associated with highly symmetric graphs. Discrete Mathematics 145(1-3): 229-237 (1995)
1994
1EEPeter Schuster, Peter F. Stadler: Landscapes: Complex Optimization Problems and Biopolymer Structures. Computers & Chemistry 18(3): 295-324 (1994)

Coauthor Index

1Ingrid G. Abfalter [22]
2Camille Stephan-Otto Attolini [40]
3Gil Benkö [19] [23] [39]
4Franziska Berger [25]
5Clara Bermudez-Santana [75]
6Detlef Bernhard [54]
7Stephan H. F. Bernhart [28] [36] [44] [45] [48] [64] [68]
8Matthias Bernt [54]
9Türker Bíyíkoglu [70]
10Julian J.-L. Chen [57]
11Jan Cupal [6] [8] [16]
12Andreas W. M. Dress [65] [72]
13Martin Fekete [14]
14Christoph Flamm [8] [19] [20] [22] [23] [25] [39] [40] [42] [47] [48] [51] [59] [65]
15Christian V. Forst [47]
16Claudia Fried [24] [35]
17Guido Fritzsch [54] [65]
18Petra M. Gleiss [15] [25] [33]
19Jan Gorodkin [73]
20Andreas R. Gruber [64]
21Stefan Grünewald [65]
22Jörg Hackermüller [36] [45] [61]
23Roland K. Hartmann [69]
24Jakob Hull Havgaard [73]
25Andreas Heffel [66] [77]
26Christian Heine [42]
27Maribel Hernandez-Rosales [68]
28Jana Hertel [52] [62] [75]
29Ivo L. Hofacker [5] [6] [10] [11] [12] [13] [14] [18] [21] [26] [27] [28] [29] [30] [32] [35] [36] [37] [41] [42] [44] [45] [46] [47] [48] [59] [62] [64] [68]
30Steve Hoffmann [75]
31Wim Hordijk [24]
32Paul Wei-Che Hsu [41]
33Sheng-Da Hsu [41]
34Fenix W. D. Huang [74]
35Hsien-Da Huang [41]
36Martijn A. Huynen [3] [5]
37Julian Jöris [61]
38Frank Jühling [69]
39Bogumil Kaczkowski [73]
40Bülent Karasözen [72]
41Gerhard Kauer [66] [77]
42Philipp Khaitovich [75]
43Konstantin Klemm [67] [71] [76]
44Stephan Kopp [16]
45Matthias Kruspe [55] [65]
46Jens-Peer Kuska [66] [77]
47David Langenberger [75]
48Jörg Lehmann [63]
49Josef Leydold [9] [15] [25] [33]
50Qiang Li [61]
51Li-Zen Lin [41]
52Manja Marz [53]
53Peter Menzel [58]
54Daniel Merkle [54]
55Martin Middendorf [54]
56Kristin Missal [38]
57Burkhard Morgenstern [31] [34] [49] [50]
58Mario Mörl [69]
59Axel Mosig [43] [53] [57] [58] [70]
60Ulrike Mückstein [18] [36] [45] [48] [68]
61Alan S. Perelson [3]
62Marleen Perseke [54]
63Dirk Pöhler [50]
64Sebastian Potzsch [51]
65Barbara Priwitzer [27]
66Sonja J. Prohaska [24] [31] [34] [50] [63] [65] [66] [70] [77]
67Joern Pütz [69]
68Jing Qin [74]
69Kai Ramsch [54]
70Kristin Reiche [56] [61] [73]
71Christian M. Reidys [4] [74]
72Alexander Renner [8]
73Markus Riester [67] [76]
74Dominic Rose [38] [61]
75Katrin Sameith [43]
76Gerik Scheuermann [42] [51]
77Martin Schlegel [54]
78Isabelle Schneider [31] [34]
79Peter Schuster [1] [10]
80Mathias Sprinzl [69]
81Bärbel M. R. Stadler [17] [53] [59]
82Claus R. Stadler [24]
83Rasmus Steinkamp [34]
84Christopher R. Stephens [60]
85Roman R. Stocsits [12] [21] [29] [35]
86Paul E. Stolorz [5]
87Amarendran R. Subramanian [31] [34]
88Hakim Tafer [36] [45] [48] [68]
89C. Thurner [32]
90Elfar Torarinsson [73]
91Marc Toussaint [60]
92Ching-Ping Tseng [41]
93Ann-Ping Tsou [41]
94W. A. Vieira [3]
95Jörg Vogel [68]
96Günter P. Wagner [7]
97Stefan Washietl [41]
98Gerhard-Wilhelm Weber [72]
99G. Weberndorfer [13]
100Nadine Werner [31] [34]
101Jan Weyer-Menkhoff [31] [34]
102L. Darrell Whitley (Darrell Whitley) [60]
103Sebastian Will [64]
104Christina Witwer [26]
105Michael T. Wolfinger [51]

Colors in the list of coauthors

Copyright © Tue Nov 3 08:52:44 2009 by Michael Ley (ley@uni-trier.de)