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Bruce A. Shapiro Vis

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*2008
30EEEckart Bindewald, Robert Hayes, Yaroslava G. Yingling, Wojciech Kasprzak, Bruce A. Shapiro: RNAJunction: a database of RNA junctions and kissing loops for three-dimensional structural analysis and nanodesign. Nucleic Acids Research 36(Database-Issue): 392-397 (2008)
2007
29EEJason Tsong-Li Wang, Dongrong Wen, Bruce A. Shapiro, Katherine G. Herbert, Jing Li, Kaushik Ghosh: Toward an Integrated RNA Motif Database. DILS 2007: 27-36
28EEMugdha Khaladkar, Vivian Bellofatto, Jason Tsong-Li Wang, Bin Tian, Bruce A. Shapiro: RADAR: a web server for RNA data analysis and research. Nucleic Acids Research 35(Web-Server-Issue): 300-304 (2007)
2006
27EEEckart Bindewald, Thomas D. Schneider, Bruce A. Shapiro: CorreLogo: an online server for 3D sequence logos of RNA and DNA alignments. Nucleic Acids Research 34(Web-Server-Issue): 405-411 (2006)
2003
26 Moon K. Kim, Robert L. Jernigan, Bruce A. Shapiro, Gregory S. Chirikjian: A Study of Conformational Changes in Macromolecules: The Coarse-Grained Elastic Network Interpolation Method. METMBS 2003: 140-145
25 Bruce A. Shapiro, David Bengali, Wojciech Kasprzak, Jin Chu Wu: Exploring RNA Intermediate Conformations with the Massively Parallel Genetic Algorithm. Computational Biology and Genome Informatics 2003: 1-33
2002
24EEXiong Wang, Jason Tsong-Li Wang, Dennis Shasha, Bruce A. Shapiro, Isidore Rigoutsos, Kaizhong Zhang: Finding Patterns in Three-Dimensional Graphs: Algorithms and Applications to Scientific Data Mining. IEEE Trans. Knowl. Data Eng. 14(4): 731-749 (2002)
2001
23EEBruce A. Shapiro, David Bengali, Wojciech Kasprzak: Determination of RNA folding pathway functional intermediates using a massively parallel genetic algorithm (abstract of invited talk). BIOKDD 2001: 1
22 Bruce A. Shapiro, Jin Chu Wu, David Bengali, Mark J. Potts: The massively parallel genetic algorithm for RNA folding: MIMD implementation and population variation. Bioinformatics 17(1): 137-148 (2001)
2000
21EEJason Tsong-Li Wang, Xiong Wang, Dennis Shasha, Bruce A. Shapiro, Kaizhong Zhang, Xinhuan Zheng, Qicheng Ma, Zasha Weinberg: An Approximate Search Engine for Structural Databases. SIGMOD Conference 2000: 584
20EEXiong Wang, Jason Tsong-Li Wang, King-Ip Lin, Dennis Shasha, Bruce A. Shapiro, Kaizhong Zhang: An Index Structure for Data Mining and Clustering. Knowl. Inf. Syst. 2(2): 161-184 (2000)
1999
19 Jason Tsong-Li Wang, Bruce A. Shapiro, Dennis Shasha: Pattern Discovery in Biomolecular Data: Tools, Techniques and Applications Oxford University Press 1999
18EEJason Tsong-Li Wang, Xiong Wang, King-Ip Lin, Dennis Shasha, Bruce A. Shapiro, Kaizhong Zhang: Evaluating a Class of Distance-Mapping Algorithms for Data Mining and Clustering. KDD 1999: 307-311
17 Bruce A. Shapiro, Wojciech Kasprzak, Jin Chu Wu, Kathleen M. Currey: RNA Structure Analysis: A Multifaceted Approach. Pattern Discovery in Biomolecular Data 1999: 183-215
16 Wojciech Kasprzak, Bruce A. Shapiro: Stem Trace: an interactive visual tool for comparative RNA structure analysis. Bioinformatics 15(1): 16-31 (1999)
15 Jason Tsong-Li Wang, Steve Rozen, Bruce A. Shapiro, Dennis Shasha, Zhiyuan Wang, Maisheng Yin: New Techniques for DNA Sequence Classification. Journal of Computational Biology 6(2): 209-218 (1999)
1998
14EEJason Tsong-Li Wang, Bruce A. Shapiro, Dennis Shasha, Kaizhong Zhang, Kathleen M. Currey: An Algorithm for Finding the Largest Approximately Common Substructures of Two Trees. IEEE Trans. Pattern Anal. Mach. Intell. 20(8): 889-895 (1998)
13 Jih-H. Chen, Shu-Yun Le, Bruce A. Shapiro, Jacob V. Maizel: Optimization of an RNA Folding Algorithm for Parallel Architectures. Parallel Computing 24(11): 1617-1634 (1998)
1997
12 Xiong Wang, Jason Tsong-Li Wang, Dennis Shasha, Bruce A. Shapiro, Sitaram Dikshitulu, Isidore Rigoutsos, Kaizhong Zhang: Automated Discovery of Active Motifs in Three Dimensional Molecules. KDD 1997: 89-95
11 Kathleen M. Currey, Bruce A. Shapiro: Secondary structure computer prediction of the poliovirus 5' non-coding region is improved by a genetic algorithm. Computer Applications in the Biosciences 13(1): 1-12 (1997)
10 Bruce A. Shapiro, Jin Chu Wu: Predicting RNA H-type pseudoknots with the massively parallel genetic algorithm. Computer Applications in the Biosciences 13(4): 459-471 (1997)
1996
9 Jason Tsong-Li Wang, Bruce A. Shapiro, Dennis Shasha, Kaizhong Zhang, Chia-Yo Chang: Automated Discovery of Active Motifs in Multiple RNA Secondary Structures. KDD 1996: 70-75
8 Bruce A. Shapiro, Jin Chu Wu: An annealing mutation operator in the genetic algorithms for RNA folding. Computer Applications in the Biosciences 12(3): 171-180 (1996)
1994
7EEJason Tsong-Li Wang, Gung-Wei Chirn, Thomas G. Marr, Bruce A. Shapiro, Dennis Shasha, Kaizhong Zhang: Combinatorial Pattern Discovery for Scientific Data: Some Preliminary Results. SIGMOD Conference 1994: 115-125
1990
6 Jih-H. Chen, Shu-Yun Le, Bruce A. Shapiro, Kathleen M. Currey, Jacob V. Maizel: A computational procedure for assessing the significance of RNA secondary structure. Computer Applications in the Biosciences 6(1): 7-18 (1990)
5 Bruce A. Shapiro, Kaizhong Zhang: Comparing multiple RNA secondary structures using tree comparisons. Computer Applications in the Biosciences 6(4): 309-318 (1990)
1989
4 Shu-Yun Le, J. Owens, Ruth Nussinov, Jih-H. Chen, Bruce A. Shapiro, Jacob V. Maizel: RNA secondary structures: comparison and determination of frequently recurring substructures by consensus. Computer Applications in the Biosciences 5(3): 205-210 (1989)
1988
3 Bruce A. Shapiro: An algorithm for comparing multiple RNA secondary structures. Computer Applications in the Biosciences 4(3): 387-393 (1988)
1986
2 Bruce A. Shapiro, Ruth Nussinov, L. E. Lipkin, Jacob V. Maizel: A sequence analysis system encompassing rules for DNA helical distortion. Nucleic Acids Research 14(1): 75-86 (1986)
1984
1 Bruce A. Shapiro, Jacob V. Maizel, L. E. Lipkin, Kathleen M. Currey, Colin G. Whitney: Generating non-overlapping displays of nucleic acid secondary structure. Nucleic Acids Research 12(1): 75-88 (1984)

Coauthor Index

1Vivian Bellofatto [28]
2David Bengali [22] [23] [25]
3Eckart Bindewald [27] [30]
4Chia-Yo Chang [9]
5Jih-H. Chen [4] [6] [13]
6Gregory S. Chirikjian [26]
7Gung-Wei Chirn [7]
8Kathleen M. Currey [1] [6] [11] [14] [17]
9Sitaram Dikshitulu [12]
10Kaushik Ghosh [29]
11Robert Hayes [30]
12Katherine G. Herbert [29]
13Robert L. Jernigan [26]
14Wojciech Kasprzak [16] [17] [23] [25] [30]
15Mugdha Khaladkar [28]
16Moon K. Kim [26]
17Shu-Yun Le [4] [6] [13]
18Jing Li [29]
19King-Ip Lin [18] [20]
20L. E. Lipkin [1] [2]
21Qicheng Ma [21]
22Jacob V. Maizel Jr. (Jacob V. Maizel) [1] [2] [4] [6] [13]
23Thomas G. Marr [7]
24Ruth Nussinov [2] [4]
25J. Owens [4]
26Mark J. Potts [22]
27Isidore Rigoutsos [12] [24]
28Steve Rozen [15]
29Thomas D. Schneider [27]
30Dennis Shasha [7] [9] [12] [14] [15] [18] [19] [20] [21] [24]
31Bin Tian [28]
32Jason Tsong-Li Wang (Jason T. L. Wang) [7] [9] [12] [14] [15] [18] [19] [20] [21] [24] [28] [29]
33Xiong Wang [12] [18] [20] [21] [24]
34Zhiyuan Wang [15]
35Zasha Weinberg [21]
36Dongrong Wen [29]
37Colin G. Whitney [1]
38Jin Chu Wu [8] [10] [17] [22] [25]
39Maisheng Yin [15]
40Yaroslava G. Yingling [30]
41Kaizhong Zhang [5] [7] [9] [12] [14] [18] [20] [21] [24]
42Xinhuan Zheng [21]

Colors in the list of coauthors

Copyright © Tue Nov 3 08:52:44 2009 by Michael Ley (ley@uni-trier.de)