dblp.uni-trier.dewww.uni-trier.de

Marie-France Sagot Vis

List of publications from the DBLP Bibliography Server - FAQ
Coauthor Index - Ask others: ACM DL/Guide - CiteSeerX - CSB - MetaPress - Google - Bing - Yahoo

*2009
63EEYves-Pol Deniélou, Frédéric Boyer, Alain Viari, Marie-France Sagot: Multiple Alignment of Biological Networks: A Flexible Approach. CPM 2009: 263-273
62EEPierre Peterlongo, Gustavo Akio Tominaga Sacomoto, Alair Pereira do Lago, Nadia Pisanti, Marie-France Sagot: Lossless filter for multiple repeats with bounded edit distance. Algorithms for Molecular Biology 4: (2009)
61EEMarie-France Sagot, B. J. Morrison McKay, Gene Myers: ISMB/ECCB 2009 Stockholm. Bioinformatics 25(12): 1570-1573 (2009)
60EEMarie-France Sagot: New EIC Editorial. IEEE/ACM Trans. Comput. Biology Bioinform. 6(1): 3 (2009)
59EEMarie-France Sagot: EIC Editorial. IEEE/ACM Trans. Comput. Biology Bioinform. 6(2): 177 (2009)
58EEMarie-France Sagot: EIC Editorial: Introducing New Associate Editors. IEEE/ACM Trans. Comput. Biology Bioinform. 6(3): 369 (2009)
2008
57EEPaulo G. S. da Fonseca, Katia S. Guimarães, Marie-France Sagot: Efficient representation and P-value computation for high-order Markov motifs. ECCB 2008: 160-166
56EELudovic Cottret, Paulo Vieira Milreu, Vicente Acuña, Alberto Marchetti-Spaccamela, Fábio Viduani Martinez, Marie-France Sagot, Leen Stougie: Enumerating Precursor Sets of Target Metabolites in a Metabolic Network. WABI 2008: 233-244
55EEClaire Lemaitre, Eric Tannier, Christian Gautier, Marie-France Sagot: Precise detection of rearrangement breakpoints in mammalian chromosomes. BMC Bioinformatics 9: (2008)
54EEJulien Allali, Marie-France Sagot: A new distance for high level RNA secondary structure comparison CoRR abs/0810.4002: (2008)
53EESaid Sadique Adi, Marília D. V. Braga, Cristina G. Fernandes, Carlos Eduardo Ferreira, Fábio Viduani Martinez, Marie-France Sagot, Marco A. Stefanes, Christian Tjandraatmadja, Yoshiko Wakabayashi: Repetition-free longest common subsequence. Electronic Notes in Discrete Mathematics 30: 243-248 (2008)
52EEMarília D. V. Braga, Marie-France Sagot, Celine Scornavacca, Eric Tannier: Exploring the Solution Space of Sorting by Reversals, with Experiments and an Application to Evolution. IEEE/ACM Trans. Comput. Biology Bioinform. 5(3): 348-356 (2008)
51EEVincent Lacroix, Ludovic Cottret, Patricia Thébault, Marie-France Sagot: An Introduction to Metabolic Networks and Their Structural Analysis. IEEE/ACM Trans. Comput. Biology Bioinform. 5(4): 594-617 (2008)
50EEPierre Peterlongo, Julien Allali, Marie-France Sagot: Indexing Gapped-Factors Using a Tree. Int. J. Found. Comput. Sci. 19(1): 71-87 (2008)
49EEKatia S. Guimarães, Marie-France Sagot: Editorial. J. Discrete Algorithms 6(2): 163 (2008)
48EEPierre Peterlongo, Nadia Pisanti, Frédéric Boyer, Alair Pereira do Lago, Marie-France Sagot: Lossless filter for multiple repetitions with Hamming distance. J. Discrete Algorithms 6(3): 497-509 (2008)
47EEJulien Allali, Marie-France Sagot: A multiple layer model to compare RNA secondary structures. Softw., Pract. Exper. 38(8): 775-792 (2008)
46EEClaire Lemaitre, Marie-France Sagot: A small trip in the untranquil world of genomes: A survey on the detection and analysis of genome rearrangement breakpoints. Theor. Comput. Sci. 395(2-3): 171-192 (2008)
2007
45 Marie-France Sagot, Maria Emilia Telles Walter: Advances in Bioinformatics and Computational Biology, Second Brazilian Symposium on Bioinformatics, BSB 2007, Angra dos Reis, Brazil, August 29-31, 2007, Proceedings Springer 2007
44EEAlexandra M. Carvalho, Arlindo L. Oliveira, Marie-France Sagot: Efficient Learning of Bayesian Network Classifiers. Australian Conference on Artificial Intelligence 2007: 16-25
43EEMarília D. V. Braga, Marie-France Sagot, Celine Scornavacca, Eric Tannier: The Solution Space of Sorting by Reversals. ISBRA 2007: 293-304
42EEEric Tannier, Anne Bergeron, Marie-France Sagot: Advances on sorting by reversals. Discrete Applied Mathematics 155(6-7): 881-888 (2007)
41EEYoan Diekmann, Marie-France Sagot, Eric Tannier: Evolution under Reversals: Parsimony and Conservation of Common Intervals. IEEE/ACM Trans. Comput. Biology Bioinform. 4(2): 301-309 (2007)
40EEEmilios Cambouropoulos, Maxime Crochemore, Costas S. Iliopoulos, Manal Mohamed, Marie-France Sagot: All maximal-pairs in step-leap representation of melodic sequence. Inf. Sci. 177(9): 1954-1962 (2007)
39EEEstela Maris Rodrigues, Marie-France Sagot, Yoshiko Wakabayashi: The maximum agreement forest problem: Approximation algorithms and computational experiments. Theor. Comput. Sci. 374(1-3): 91-110 (2007)
2006
38EENadia Pisanti, Alexandra M. Carvalho, Laurent Marsan, Marie-France Sagot: RISOTTO: Fast Extraction of Motifs with Mismatches. LATIN 2006: 757-768
37EEPierre Peterlongo, Julien Allali, Marie-France Sagot: The gapped-factor tree. Stringology 2006: 182-196
36EEAlexandra M. Carvalho, Ana T. Freitas, Arlindo L. Oliveira, Marie-France Sagot: An Efficient Algorithm for the Identification of Structured Motifs in DNA Promoter Sequences. IEEE/ACM Trans. Comput. Biology Bioinform. 3(2): 126-140 (2006)
35EEVincent Lacroix, Cristina G. Fernandes, Marie-France Sagot: Motif Search in Graphs: Application to Metabolic Networks. IEEE/ACM Trans. Comput. Biology Bioinform. 3(4): 360-368 (2006)
34EEMaxime Crochemore, Costas S. Iliopoulos, Manal Mohamed, Marie-France Sagot: Longest repeats with a block of k don't cares. Theor. Comput. Sci. 362(1-3): 248-254 (2006)
2005
33EEAlexandra M. Carvalho, Ana T. Freitas, Arlindo L. Oliveira, Marie-France Sagot: A highly scalable algorithm for the extraction of CIS-regulatory regions. APBC 2005: 273-282
32EEMarie-France Sagot, Eric Tannier: Perfect Sorting by Reversals. COCOON 2005: 42-51
31EEEmilios Cambouropoulos, Maxime Crochemore, Costas S. Iliopoulos, Manal Mohamed, Marie-France Sagot: A Pattern Extraction Algorithm for Abstract Melodic Representations that Allow Partial Overlapping of Intervallic Categories. ISMIR 2005: 167-174
30EEPierre Peterlongo, Nadia Pisanti, Frédéric Boyer, Marie-France Sagot: Lossless Filter for Finding Long Multiple Approximate Repetitions Using a New Data Structure, the Bi-factor Array. SPIRE 2005: 179-190
29EEJulien Allali, Marie-France Sagot: A Multiple Graph Layers Model with Application to RNA Secondary Structures Comparison. SPIRE 2005: 348-359
28EEVincent Lacroix, Cristina G. Fernandes, Marie-France Sagot: Reaction Motifs in Metabolic Networks. WABI 2005: 178-191
27EEJulien Allali, Marie-France Sagot: A New Distance for High Level RNA Secondary Structure Comparison. IEEE/ACM Trans. Comput. Biology Bioinform. 2(1): 3-14 (2005)
26EENadia Pisanti, Maxime Crochemore, Roberto Grossi, Marie-France Sagot: Bases of Motifs for Generating Repeated Patterns with Wild Cards. IEEE/ACM Trans. Comput. Biology Bioinform. 2(1): 40-50 (2005)
25EECostas S. Iliopoulos, James A. M. McHugh, Pierre Peterlongo, Nadia Pisanti, Wojciech Rytter, Marie-France Sagot: A first approach to finding common motifs with gaps. Int. J. Found. Comput. Sci. 16(6): 1145-1154 (2005)
2004
24EEEric Tannier, Marie-France Sagot: Sorting by Reversals in Subquadratic Time. CPM 2004: 1-13
23EEMaxime Crochemore, Costas S. Iliopoulos, Manal Mohamed, Marie-France Sagot: Longest Repeats with a Block of Don't Cares. LATIN 2004: 271-278
22EEAlexandra M. Carvalho, Arlindo L. Oliveira, Ana T. Freitas, Marie-France Sagot: A parallel algorithm for the extraction of structured motifs. SAC 2004: 147-153
21EEAlexandra M. Carvalho, Ana T. Freitas, Arlindo L. Oliveira, Marie-France Sagot: Efficient Extraction of Structured Motifs Using Box-Links. SPIRE 2004: 267-268
20EEMaxime Crochemore, Raffaele Giancarlo, Marie-France Sagot: Longest Motifs with a Functionally Equivalent Central Block. SPIRE 2004: 298-209
19EECostas S. Iliopoulos, James A. M. McHugh, Pierre Peterlongo, Nadia Pisanti, Wojciech Rytter, Marie-France Sagot: A First Approach to Finding Common Motifs With Gaps. Stringology 2004: 88-97
18EEJulien Allali, Marie-France Sagot: Novel Tree Edit Operations for RNA Secondary Structure Comparison. WABI 2004: 412-425
2003
17EENadia Pisanti, Maxime Crochemore, Roberto Grossi, Marie-France Sagot: A Basis of Tiling Motifs for Generating Repeated Patterns and Its Complexity for Higher Quorum. MFCS 2003: 622-631
16 Philippe Blayo, Pierre Rouzé, Marie-France Sagot: Orphan gene finding - an exon assembly approach. Theor. Comput. Sci. 290(3): 1407-1431 (2003)
2002
15EENadia Pisanti, Marie-France Sagot: Further Thoughts on the Syntenic Distance between Genomes. Algorithmica 34(2): 157-180 (2002)
14 Stéphane Robin, Jean-Jacques Daudin, Hugues Richard, Marie-France Sagot, Sophie Schbath: Occurrence Probability of Structured Motifs in Random Sequences. Journal of Computational Biology 9(6): 761-774 (2002)
2001
13 Olivier Gascuel, Marie-France Sagot: Computational Biology, First International Conference on Biology, Informatics, and Mathematics, JOBIM 2000, Montpellier, France, May 3-5, 2000, Selected Papers Springer 2001
12EEEstela Maris Rodrigues, Marie-France Sagot, Yoshiko Wakabayashi: Some Approximation Results for the Maximum Agreement Forest Problem. RANDOM-APPROX 2001: 159-169
2000
11EELaurent Marsan, Marie-France Sagot: Extracting structured motifs using a suffix tree - algorithms and application to promoter consensus identification. RECOMB 2000: 210-219
10 Laurent Marsan, Marie-France Sagot: Algorithms for Extracting Structured Motifs Using a Suffix Tree with an Application to Promoter and Regulatory Site Consensus Identification. Journal of Computational Biology 7(3-4): 345-362 (2000)
1998
9EEMarie-France Sagot: Spelling Approximate Repeated or Common Motifs Using a Suffix Tree. LATIN 1998: 374-390
8EEMarie-France Sagot, Eugene W. Myers: Identifying satellites in nucleic acid sequences. RECOMB 1998: 234-242
7 Marie-France Sagot, Eugene W. Myers: Identifying Satellites and Periodic Repetitions in Biological Sequences. Journal of Computational Biology 5(3): 539-554 (1998)
1997
6 Marie-France Sagot, Alain Viari: Flexible Identification of Structural Objects in Nucleic Acid Sequences: Palindromes, Mirror Repeats, Pseudoknots and Triple Helices. CPM 1997: 224-246
5EEMarie-France Sagot, Alain Viari, Henry Soldano: Multiple Sequence Comparison - A Peptide Matching Approach. Theor. Comput. Sci. 180(1-2): 115-137 (1997)
1996
4 Marie-France Sagot, Alain Viari: A Double Combinatorial Approach to Discovering Patterns in Biological Sequences. CPM 1996: 186-208
1995
3 Marie-France Sagot, Alain Viari, Henry Soldano: Multiple Sequence Comparison: A Peptide Matching Approach. CPM 1995: 366-385
2 Marie-France Sagot, Alain Viari, Henry Soldano: A Distance-Based Block Searching Algorithm. ISMB 1995: 322-331
1 Marie-France Sagot, Alain Viari, Joël Pothier, Henry Soldano: Finding flexible patterns in a text: an application to three-dimensional molecular matching. Computer Applications in the Biosciences 11(1): 59-70 (1995)

Coauthor Index

1Vicente Acuña [56]
2Said Sadique Adi [53]
3Julien Allali [18] [27] [29] [37] [47] [50] [54]
4Anne Bergeron [42]
5Philippe Blayo [16]
6Frédéric Boyer [30] [48] [63]
7Marília D. V. Braga [43] [52] [53]
8Emilios Cambouropoulos [31] [40]
9Alexandra M. Carvalho [21] [22] [33] [36] [38] [44]
10Ludovic Cottret [51] [56]
11Maxime Crochemore [17] [20] [23] [26] [31] [34] [40]
12Jean-Jacques Daudin [14]
13Yves-Pol Deniélou [63]
14Yoan Diekmann [41]
15Cristina G. Fernandes [28] [35] [53]
16Carlos Eduardo Ferreira [53]
17Paulo G. S. da Fonseca [57]
18Ana T. Freitas [21] [22] [33] [36]
19Olivier Gascuel [13]
20Christian Gautier [55]
21Raffaele Giancarlo [20]
22Roberto Grossi [17] [26]
23Katia S. Guimarães [49] [57]
24Costas S. Iliopoulos [19] [23] [25] [31] [34] [40]
25Vincent Lacroix [28] [35] [51]
26Alair Pereira do Lago [48] [62]
27Claire Lemaitre [46] [55]
28Alberto Marchetti-Spaccamela [56]
29Laurent Marsan [10] [11] [38]
30Fábio Viduani Martinez [53] [56]
31James A. M. McHugh [19] [25]
32B. J. Morrison McKay [61]
33Paulo Vieira Milreu [56]
34Manal Mohamed [23] [31] [34] [40]
35Eugene W. Myers (Gene Myers) [7] [8] [61]
36Arlindo L. Oliveira [21] [22] [33] [36] [44]
37Pierre Peterlongo [19] [25] [30] [37] [48] [50] [62]
38Nadia Pisanti [15] [17] [19] [25] [26] [30] [38] [48] [62]
39Joël Pothier [1]
40Hugues Richard [14]
41Stéphane Robin [14]
42Estela Maris Rodrigues [12] [39]
43Pierre Rouzé [16]
44Wojciech Rytter [19] [25]
45Gustavo Akio Tominaga Sacomoto [62]
46Sophie Schbath [14]
47Celine Scornavacca [43] [52]
48Henry Soldano [1] [2] [3] [5]
49Marco A. Stefanes [53]
50Leen Stougie [56]
51Eric Tannier [24] [32] [41] [42] [43] [52] [55]
52Patricia Thébault [51]
53Christian Tjandraatmadja [53]
54Alain Viari [1] [2] [3] [4] [5] [6] [63]
55Yoshiko Wakabayashi [12] [39] [53]
56Maria Emilia Telles Walter (Maria Emilia M. T. Walter) [45]

Colors in the list of coauthors

Copyright © Tue Nov 3 08:52:44 2009 by Michael Ley (ley@uni-trier.de)