Usman Roshan Vis

*	2008
17	EE	Usman Roshan, Satish Chikkagoudar, Dennis R. Livesay: Searching for evolutionary distant RNA homologs within genomic sequences using partition function posterior probabilities. BMC Bioinformatics 9: (2008)
	2007
16	EE	Dennis R. Livesay, Patrick D. Kidd, Sepehr Eskandari, Usman Roshan: Assessing the ability of sequence-based methods to provide functional insight within membrane integral proteins: a case study analyzing the neurotransmitter/Na+ symporter family. BMC Bioinformatics 8: (2007)
15	EE	Satish Chikkagoudar, Usman Roshan, Dennis R. Livesay: eProbalign: generation and manipulation of multiple sequence alignments using partition function posterior probabilities. Nucleic Acids Research 35(Web-Server-Issue): 675-677 (2007)
	2006
14		Usman Roshan, Dennis R. Livesay, Satish Chikkagoudar: Improving progressive alignment for phylogeny reconstruction using parsimonious guide-trees. BIBE 2006: 159-164
13		David A. Bader, Usman Roshan, Alexandros Stamatakis: Computational Grand Challenges in Assembling the Tree of Life: Problems and Solutions. Advances in Computers 68: 128-179 (2006)
12	EE	Usman Roshan, Dennis R. Livesay: Probalign: multiple sequence alignment using partition function posterior probabilities. Bioinformatics 22(22): 2715-2721 (2006)
11	EE	Yuri Dotsenko, Cristian Coarfa, Luay Nakhleh, John M. Mellor-Crummey, Usman Roshan: PRec-I-DCM3: a parallel framework for fast and accurate large-scale phylogeny reconstruction. IJBRA 2(4): 407-419 (2006)
	2005
10	EE	Usman Roshan, Dennis R. Livesay, David La: Improved Phylogenetic Motif Detection Using Parsimony. BIBE 2005: 19-26
9	EE	Z. Du, Alexandros Stamatakis, F. Lin, Usman Roshan, Luay Nakhleh: Parallel Divide-and-Conquer Phylogeny Reconstruction by Maximum Likelihood. HPCC 2005: 776-785
8	EE	Cristian Coarfa, Yuri Dotsenko, John M. Mellor-Crummey, Luay Nakhleh, Usman Roshan: PRec-I-DCM3: A Parallel Framework for Fast and Accurate Large Scale Phylogeny Reconstruction. ICPADS (2) 2005: 346-350
	2004
7	EE	Usman Roshan, Bernard M. E. Moret, Tandy Warnow, Tiffani L. Williams: Rec-I-DCM3: A Fast Algorithmic Technique for Reconstructing Large Phylogenetic Trees. CSB 2004: 98-109
	2003
6		Inderjit S. Dhillon, Edward M. Marcotte, Usman Roshan: Diametrical clustering for identifying anti-correlated gene clusters. Bioinformatics 19(13): 1612-1619 (2003)
	2002
5	EE	Luay Nakhleh, Bernard M. E. Moret, Usman Roshan, Katherine St. John, Jerry Sun, Tandy Warnow: The Accuracy of Fast Phylogenetic Methods for Large Datasets. Pacific Symposium on Biocomputing 2002: 211-222
4	EE	Luay Nakhleh, Usman Roshan, Lisa Vawter, Tandy Warnow: Estimating the Deviation from a Molecular Clock. WABI 2002: 287-299
3	EE	Bernard M. E. Moret, Usman Roshan, Tandy Warnow: Sequence-Length Requirements for Phylogenetic Methods. WABI 2002: 343-356
	2001
2		Luay Nakhleh, Usman Roshan, Katherine St. John, Jerry Sun, Tandy Warnow: Designing fast converging phylogenetic methods. ISMB (Supplement of Bioinformatics) 2001: 190-198
1	EE	Luay Nakhleh, Usman Roshan, Katherine St. John, Jerry Sun, Tandy Warnow: The Performance of Phylogenetic Methods on Trees of Bounded Diameter. WABI 2001: 214-226

Coauthor Index

1	David A. Bader	[13]
2	Satish Chikkagoudar	[14] [15] [17]
3	Cristian Coarfa	[8] [11]
4	Inderjit S. Dhillon	[6]
5	Yuri Dotsenko	[8] [11]
6	Z. Du	[9]
7	Sepehr Eskandari	[16]
8	Katherine St. John	[1] [2] [5]
9	Patrick D. Kidd	[16]
10	David La	[10]
11	F. Lin	[9]
12	Dennis R. Livesay	[10] [12] [14] [15] [16] [17]
13	Edward M. Marcotte	[6]
14	John M. Mellor-Crummey	[8] [11]
15	Bernard M. E. Moret	[3] [5] [7]
16	Luay Nakhleh	[1] [2] [4] [5] [8] [9] [11]
17	Alexandros Stamatakis	[9] [13]
18	Jerry Sun	[1] [2] [5]
19	Lisa Vawter	[4]
20	Tandy Warnow	[1] [2] [3] [4] [5] [7]
21	Tiffani L. Williams	[7]

Colors in the list of coauthors