| * | 2009 |
| 15 | EE | Andrés Esteban-Marcos,
Aaron E. Darling,
Mark A. Ragan:
Seevolution: visualizing chromosome evolution.
Bioinformatics 25(7): 960-961 (2009) |
| 14 | EE | Tim McComb,
Oliver Cairncross,
Andrew B. Noske,
David L. A. Wood,
Brad J. Marsh,
Mark A. Ragan:
IllouraTM: a software tool for analysis, visualization and semantic querying of cellular and other spatial biological data.
Bioinformatics 25(9): 1208-1210 (2009) |
| 13 | EE | Todd J. Treangen,
Aaron E. Darling,
Guillaume Achaz,
Mark A. Ragan,
Xavier Messeguer,
Eduardo P. C. Rocha:
A Novel Heuristic for Local Multiple Alignment of Interspersed DNA Repeats.
IEEE/ACM Trans. Comput. Biology Bioinform. 6(2): 180-189 (2009) |
| 2008 |
| 12 | EE | Melissa J. Davis,
Andrew Newman,
Imran Khan,
Jane Hunter,
Mark A. Ragan:
Integrating Hierarchical Controlled Vocabularies With OWL Ontology: A Case Study from the Domain of Molecular Interactions.
APBC 2008: 145-154 |
| 11 | EE | Todd J. Treangen,
Aaron E. Darling,
Mark A. Ragan,
Xavier Messeguer:
Gapped Extension for Local Multiple Alignment of Interspersed DNA Repeats.
ISBRA 2008: 74-86 |
| 10 | EE | Simon Wong,
Mark A. Ragan:
MACHOS: Markov clusters of homologous subsequences.
ISMB 2008: 77-85 |
| 9 | EE | Mark A. Ragan,
Brad J. Marsh:
The Visible Cell Project: Changing the Way We Think about Cells.
ISPAN 2008: 10 |
| 2007 |
| 8 | EE | Benny Chor,
Michael R. Fellows,
Mark A. Ragan,
Igor Razgon,
Frances A. Rosamond,
Sagi Snir:
Connected Coloring Completion for General Graphs: Algorithms and Complexity.
COCOON 2007: 75-85 |
| 7 | EE | Hans L. Bodlaender,
Michael R. Fellows,
Michael A. Langston,
Mark A. Ragan,
Frances A. Rosamond,
Mark Weyer:
Quadratic Kernelization for Convex Recoloring of Trees.
COCOON 2007: 86-96 |
| 2006 |
| 6 | | Hans L. Bodlaender,
Michael R. Fellows,
Michael A. Langston,
Mark A. Ragan,
Frances A. Rosamond,
Mark Weyer:
Kernelization for Convex Recoloring.
ACiD 2006: 23-35 |
| 5 | EE | Mark A. Ragan:
Automating the Search for Lateral Gene Transfer.
APBC 2006: 3 |
| 4 | EE | Kevin Burrage,
Lindsay Hood,
Mark A. Ragan:
Advanced computing for systems biology.
Briefings in Bioinformatics 7(4): 390-398 (2006) |
| 2005 |
| 3 | EE | Alexander García Castro,
Samuel Thoraval,
Leyla Jael García-Castro,
Mark A. Ragan:
Workflows in bioinformatics: meta-analysis and prototype implementation of a workflow generator.
BMC Bioinformatics 6: 87 (2005) |
| 2 | EE | Robert G. Beiko,
Cheong Xin Chan,
Mark A. Ragan:
A word-oriented approach to alignment validation.
Bioinformatics 21(10): 2230-2239 (2005) |
| 2004 |
| 1 | EE | Timothy J. Harlow,
J. Peter Gogarten,
Mark A. Ragan:
A hybrid clustering approach to recognition of protein families in 114 microbial genomes.
BMC Bioinformatics 5: 45 (2004) |