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Pavel A. Pevzner Vis

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*2009
90EEQian Peng, Max A. Alekseyev, Glenn Tesler, Pavel A. Pevzner: Decoding Synteny Blocks and Large-Scale Duplications in Mammalian and Plant Genomes. WABI 2009: 220-232
2008
89EENuno Bandeira, Jesper V. Olsen, Matthias Mann, Pavel A. Pevzner: Multi-spectra peptide sequencing and its applications to multistage mass spectrometry. ISMB 2008: 416-423
88EENuno Bandeira, Julio Ng, Dario Meluzzi, Roger G. Linington, Pieter Dorrestein, Pavel A. Pevzner: De Novo Sequencing of Nonribosomal Peptides. RECOMB 2008: 181-195
87EEMax A. Alekseyev, Pavel A. Pevzner: Multi-break rearrangements and chromosomal evolution. Theor. Comput. Sci. 395(2-3): 193-202 (2008)
2007
86EEPavel A. Pevzner: Protein Identification via Spectral Networks Analysis. APBC 2007: 5
85EEMax A. Alekseyev, Pavel A. Pevzner: Whole genome duplications, multi-break rearrangements, and genome halving problem. SODA 2007: 665-679
84EEPavel A. Pevzner: Shotgun Protein Sequencing. WABI 2007: 1
83EESorin Istrail, Pavel A. Pevzner, Ron Shamir: Preface. Discrete Applied Mathematics 155(6-7): 673-674 (2007)
82EEDegui Zhi, Uri Keich, Pavel A. Pevzner, Steffen Heber, Haixu Tang: Correcting Base-Assignment Errors in Repeat Regions of Shotgun Assembly. IEEE/ACM Trans. Comput. Biology Bioinform. 4(1): 54-64 (2007)
81EEMax A. Alekseyev, Pavel A. Pevzner: Colored de Bruijn Graphs and the Genome Halving Problem. IEEE/ACM Trans. Comput. Biology Bioinform. 4(1): 98-107 (2007)
80EERichard M. Karp, Ming Li, Pavel A. Pevzner, Ron Shamir: Special issue on computational molecular biology. J. Comput. Syst. Sci. 73(7): 1023 (2007)
79EEMax A. Alekseyev, Pavel A. Pevzner: Whole Genome Duplications and Contracted Breakpoint Graphs. SIAM J. Comput. 36(6): 1748-1763 (2007)
2006
78 Alberto Apostolico, Concettina Guerra, Sorin Istrail, Pavel A. Pevzner, Michael S. Waterman: Research in Computational Molecular Biology, 10th Annual International Conference, RECOMB 2006, Venice, Italy, April 2-5, 2006, Proceedings Springer 2006
77EEKet Fah Chong, Kang Ning, Hon Wai Leong, Pavel A. Pevzner: Characterization of Multi-Charge Mass Spectra for Peptide Sequencing. APBC 2006: 109-119
76EENeil C. Jones, Pavel A. Pevzner: Comparative genomics reveals unusually long motifs in mammalian genomes. ISMB (Supplement of Bioinformatics) 2006: 236-242
75EENuno Bandeira, Dekel Tsur, Ari Frank, Pavel A. Pevzner: A New Approach to Protein Identification. RECOMB 2006: 363-378
74EEKet Fah Chong, Kang Ning, Hon Wai Leong, Pavel A. Pevzner: Modeling and Characterization of Multi-charge Mass Spectra for Peptide Sequencing. J. Bioinformatics and Computational Biology 4(6): 1329-1352 (2006)
2005
73 Satoru Miyano, Jill P. Mesirov, Simon Kasif, Sorin Istrail, Pavel A. Pevzner, Michael S. Waterman: Research in Computational Molecular Biology, 9th Annual International Conference, RECOMB 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings Springer 2005
72EEDekel Tsur, Stephen Tanner, Ebrahim Zandi, Vineet Bafna, Pavel A. Pevzner: Identification of Post-Translational Modifications via Blind Search of Mass-Spectra. CSB 2005: 157-166
71EEAlkes L. Price, Neil C. Jones, Pavel A. Pevzner: De novo identification of repeat families in large genomes. ISMB (Supplement of Bioinformatics) 2005: 351-358
70EEAri Frank, Stephen Tanner, Pavel A. Pevzner: Peptide Sequence Tags for Fast Database Search in Mass-Spectrometry. RECOMB 2005: 326-341
69EERichard M. Karp, Ming Li, Pavel A. Pevzner, Ron Shamir: Guest Editors' foreword. J. Comput. Syst. Sci. 70(3): 283- (2005)
2004
68EEMax A. Alekseyev, Pavel A. Pevzner: Genome Halving Problem Revisited. FSTTCS 2004: 1-15
67EEBenjamin J. Raphael, Pavel A. Pevzner: Reconstructing tumor amplisomes. ISMB/ECCB (Supplement of Bioinformatics) 2004: 265-273
66EEPavel A. Pevzner, Haixu Tang, Glenn Tesler: De novo repeat classification and fragment assembly. RECOMB 2004: 213-222
65EEMark Chaisson, Pavel A. Pevzner, Haixu Tang: Fragment assembly with short reads. Bioinformatics 20(13): 2067-2074 (2004)
64EEPavel A. Pevzner: Educating biologists in the 21st century: bioinformatics scientists versus bioinformatics technicians. Bioinformatics 20(14): 2159-2161 (2004)
63EEAndrew B. Kahng, Ion I. Mandoiu, Pavel A. Pevzner, Sherief Reda, Alexander Zelikovsky: Scalable Heuristics for Design of DNA Probe Arrays. Journal of Computational Biology 11(2/3): 429-447 (2004)
2003
62 Alkes L. Price, Sriram Ramabhadran, Pavel A. Pevzner: Finding subtle motifs by branching from sample strings. ECCB 2003: 149-155
61 Benjamin J. Raphael, Stanislav Volik, Colin Collins, Pavel A. Pevzner: Reconstructing tumor genome architectures. ECCB 2003: 162-171
60EEEleazar Eskin, Uri Keich, Mikhail S. Gelfand, Pavel A. Pevzner: Genome-Wide Analysis of Bacterial Promoter Regions. Pacific Symposium on Biocomputing 2003: 29-40
59EEAndrew B. Kahng, Ion I. Mandoiu, Pavel A. Pevzner, Sherief Reda, Alexander Zelikovsky: Engineering a scalable placement heuristic for DNA probe arrays. RECOMB 2003: 148-156
58EEPavel A. Pevzner, Glenn Tesler: Transforming men into mice: the Nadeau-Taylor chromosomal breakage model revisited. RECOMB 2003: 247-256
2002
57 Steffen Heber, Max A. Alekseyev, Sing-Hoi Sze, Haixu Tang, Pavel A. Pevzner: Splicing graphs and EST assembly problem. ISMB 2002: 181-188
56 Eleazar Eskin, Pavel A. Pevzner: Finding composite regulatory patterns in DNA sequences. ISMB 2002: 354-363
55EEZufar Mulyukov, Pavel A. Pevzner: EULER-PCR: Finishing Experiments for Repeat Resolution. Pacific Symposium on Biocomputing 2002: 199-210
54EESing-Hoi Sze, Mikhail S. Gelfand, Pavel A. Pevzner: Finding Weak Motifs in DNA Sequences. Pacific Symposium on Biocomputing 2002: 235-246
53EEUri Keich, Pavel A. Pevzner: Finding motifs in the twilight zone. RECOMB 2002: 195-204
52EEAndrew B. Kahng, Ion I. Mandoiu, Pavel A. Pevzner, Sherief Reda, Alexander Zelikovsky: Border Length Minimization in DNA Array Design. WABI 2002: 435-448
51 Uri Keich, Pavel A. Pevzner: Finding motifs in the twilight zone. Bioinformatics 18(10): 1374-1381 (2002)
50 Uri Keich, Pavel A. Pevzner: U Subtle motifs: defining the limits of motif finding algorithms. Bioinformatics 18(10): 1382-1390 (2002)
49EEMing Li, Pavel A. Pevzner, Ron Shamir: Foreword. J. Comput. Syst. Sci. 65(3): 441 (2002)
2001
48 Pavel A. Pevzner, Haixu Tang: Fragment assembly with double-barreled data. ISMB (Supplement of Bioinformatics) 2001: 225-233
47EEAbdullah N. Arslan, Ömer Egecioglu, Pavel A. Pevzner: A new approach to sequence comparison: normalized sequence alignment. RECOMB 2001: 2-11
46EEPavel A. Pevzner, Haixu Tang, Michael S. Waterman: A new approach to fragment assembly in DNA sequencing. RECOMB 2001: 256-267
45 Abdullah N. Arslan, Ömer Egecioglu, Pavel A. Pevzner: A new approach to sequence comparison: normalized sequence alignment. Bioinformatics 17(4): 327-337 (2001)
44EELeslie Ann Goldberg, Paul W. Goldberg, Mike Paterson, Pavel A. Pevzner, Süleyman Cenk Sahinalp, Elizabeth Sweedyk: The Complexity of Gene Placement. J. Algorithms 41(2): 225-243 (2001)
2000
43 Pavel A. Pevzner, Sing-Hoi Sze: Combinatorial Approaches to Finding Subtle Signals in DNA Sequences. ISMB 2000: 269-278
42EEPavel A. Pevzner, Vlado Dancík, Chris L. Tang: Mutation-tolerant protein identification by mass-spectrometry. RECOMB 2000: 231-236
41 Sorin Istrail, Pavel A. Pevzner, Ron Shamir: Foreword. Discrete Applied Mathematics 104(1-3): 1-2 (2000)
40 Pavel A. Pevzner, Vlado Dancík, Chris L. Tang: Mutation-Tolerant Protein Identification by Mass Spectrometry. Journal of Computational Biology 7(6): 777-787 (2000)
1999
39 Earl Hubbell, Pavel A. Pevzner: Fidelity Probes for DNA Arrays. ISMB 1999: 113-117
38EELeslie Ann Goldberg, Paul W. Goldberg, Mike Paterson, Pavel A. Pevzner, Süleyman Cenk Sahinalp, Elizabeth Sweedyk: The Complexity of Gene Placement. SODA 1999: 386-395
37EESridhar Hannenhalli, Pavel A. Pevzner: Transforming Cabbage into Turnip: Polynomial Algorithm for Sorting Signed Permutations by Reversals. J. ACM 46(1): 1-27 (1999)
36 Vlado Dancík, Theresa A. Addona, Karl R. Clauser, James E. Vath, Pavel A. Pevzner: De Novo Peptide Sequencing via Tandem Mass Spectrometry. Journal of Computational Biology 6(3/4): (1999)
1998
35 Andrey A. Mironov, Pavel A. Pevzner: SST versus EST in Gene Recognition (Invited Paper). SPIRE 1998: 60-64
34 Sing-Hoi Sze, Mikhail A. Roytberg, Mikhail S. Gelfand, Andrey A. Mironov, Tatiana V. Astakhova, Pavel A. Pevzner: Algorithms and software for support of gene identification experiments. Bioinformatics 14(1): 14-19 (1998)
33EESorin Istrail, Pavel A. Pevzner, Ron Shamir: Foreword. Discrete Applied Mathematics 88(1-3): 3-6 (1998)
32EEVineet Bafna, Pavel A. Pevzner: Sorting by Transpositions. SIAM J. Discrete Math. 11(2): 224-240 (1998)
1997
31 Guorong Xu, Sing-Hoi Sze, Cheng-Pin Liu, Pavel A. Pevzner, Norman Arnheim: Gene Hunting without Sequencing Genomis Clones: the "Twenty Questions" game with genes. German Conference on Bioinformatics 1997: 17
30EESing-Hoi Sze, Pavel A. Pevzner: Las Vegas algorithms for gene recognition: suboptimal and error-tolerant spliced alignment. RECOMB 1997: 300-309
29 I. Belyi, Pavel A. Pevzner: Software for DNA sequencing by hybridization. Computer Applications in the Biosciences 13(2): 205-210 (1997)
28 Michael S. Waterman, Sorin Istrail, Pavel A. Pevzner: Selected Papers from RECOMB'97 - Preface. Journal of Computational Biology 4(3): 215-216 (1997)
27 Sing-Hoi Sze, Pavel A. Pevzner: Las Vegas Algorithms for Gene Recognition: Suboptimal and Error-Tolerant Spliced Alignment. Journal of Computational Biology 4(3): 297-310 (1997)
26EEVineet Bafna, Eugene L. Lawler, Pavel A. Pevzner: Approximation Algorithms for Multiple Sequence Alignment. Theor. Comput. Sci. 182(1-2): 233-244 (1997)
1996
25 Mikhail S. Gelfand, Andrey A. Mironov, Pavel A. Pevzner: Spliced Alignment: A New Approach to Gene Recognition. CPM 1996: 141-158
24 Sridhar Hannenhalli, Pavel A. Pevzner: To Cut... or Not to Cut (Applications of Comparative Physical Maps in Molecular Evolution). SODA 1996: 304-313
23 Sridhar Hannenhalli, W. Feldman, H. F. Lewis, Steven Skiena, Pavel A. Pevzner: Positional sequencing by hybridization. Computer Applications in the Biosciences 12(1): 19-24 (1996)
22 Vineet Bafna, Pavel A. Pevzner: Genome Rearrangements and Sorting by Reversals. SIAM J. Comput. 25(2): 272-289 (1996)
1995
21 Sridhar Hannenhalli, Pavel A. Pevzner: Transforming Men into Mice (Polynomial Algorithm for Genomic Distance Problem). FOCS 1995: 581-592
20 Pavel A. Pevzner, Michael S. Waterman: Open Combinatorial Problems in Computational Molecular Biology. ISTCS 1995: 158-173
19 Vineet Bafna, Pavel A. Pevzner: Sorting Permutations by Transpositions. SODA 1995: 614-623
18EESridhar Hannenhalli, Pavel A. Pevzner: Transforming cabbage into turnip: polynomial algorithm for sorting signed permutations by reversals. STOC 1995: 178-189
17EESridhar Hannenhalli, Pavel A. Pevzner: Towards a Computational Theory of Genome Rearrangements. Computer Science Today 1995: 184-202
16 Pavel A. Pevzner, Michael S. Waterman: Multiple Filtration and Approximate Pattern Matching. Algorithmica 13(1/2): 135-154 (1995)
15 Pavel A. Pevzner: DNA Physical Mapping and Alternating Eulerian Cycles in Colored Graphs. Algorithmica 13(1/2): 77-105 (1995)
14 Andrey A. Mironov, N. N. Alexandrov, N. Yu. Bogodarova, A. Grigorjev, V. F. Lebedev, L. V. Lunovskaya, M. E. Truchan, Pavel A. Pevzner: DNASUN: a package of computer programs for the biotechnology laboratory. Computer Applications in the Biosciences 11(3): 331-335 (1995)
1994
13 Vineet Bafna, Eugene L. Lawler, Pavel A. Pevzner: Approximation Algorithms for Multiple Sequence Alignment. CPM 1994: 43-53
12 Xiaoqiu Huang, Pavel A. Pevzner, Webb Miller: Parametric Recomuting in Alignment Graphs. CPM 1994: 87-101
11EEPavel A. Pevzner, Robert J. Lipshutz: Towards DNA Sequencing Chips. MFCS 1994: 143-158
10EEPavel A. Pevzner: Rearrangements of DNA Sequences and SBH. Computers & Chemistry 18(3): 221-223 (1994)
1993
9 Pavel A. Pevzner, Michael S. Waterman: A Fast Filtration Algorithm for the Substring Matching Problem. CPM 1993: 197-214
8 Martin Vingron, Pavel A. Pevzner: Multiple Sequence Comparison and n-Dimensional Image Reconstruction. CPM 1993: 243-253
7 Vineet Bafna, Pavel A. Pevzner: Genome Rearrangements and Sorting by Reversals FOCS 1993: 148-157
1992
6 Pavel A. Pevzner: Multiple Alignment with Guaranteed Error Bounds and Communication Cost. CPM 1992: 205-213
5 Pavel A. Pevzner, Michael S. Waterman: Matrix Longest Common Subsequence Problem, Duality and Hibert Bases. CPM 1992: 79-89
4 Pavel A. Pevzner: Statistical distance between texts and filtration methods in sequence comparison. Computer Applications in the Biosciences 8(2): 121-127 (1992)
3 Mikhail S. Gelfand, C. G. Kozhukhin, Pavel A. Pevzner: Extendable words in nucleotide sequences. Computer Applications in the Biosciences 8(2): 129-135 (1992)
2EEPavel A. Pevzner: Nucleotide Sequences Versus Markov Models. Computers & Chemistry 16(2): 103-106 (1992)
1991
1 C. G. Kozhukhin, Pavel A. Pevzner: Genome inhomogeneity is determined mainly by WW and SS dinucleotides. Computer Applications in the Biosciences 7(1): 39-49 (1991)

Coauthor Index

1Theresa A. Addona [36]
2Max A. Alekseyev [57] [68] [79] [81] [85] [87] [90]
3N. N. Alexandrov [14]
4Alberto Apostolico [78]
5Norman Arnheim [31]
6Abdullah N. Arslan [45] [47]
7Tatiana V. Astakhova [34]
8Vineet Bafna [7] [13] [19] [22] [26] [32] [72]
9Nuno Bandeira [75] [88] [89]
10I. Belyi [29]
11N. Yu. Bogodarova [14]
12Mark Chaisson [65]
13Ket Fah Chong [74] [77]
14Karl R. Clauser [36]
15Colin Collins [61]
16Vlado Dancík [36] [40] [42]
17Pieter Dorrestein [88]
18Ömer Egecioglu [45] [47]
19Eleazar Eskin [56] [60]
20W. Feldman [23]
21Ari Frank [70] [75]
22Mikhail S. Gelfand [3] [25] [34] [54] [60]
23Leslie Ann Goldberg [38] [44]
24Paul W. Goldberg [38] [44]
25A. Grigorjev [14]
26Concettina Guerra [78]
27Sridhar Hannenhalli [17] [18] [21] [23] [24] [37]
28Steffen Heber [57] [82]
29Xiaoqiu Huang [12]
30Earl Hubbell [39]
31Sorin Istrail [28] [33] [41] [73] [78] [83]
32Neil C. Jones [71] [76]
33Andrew B. Kahng [52] [59] [63]
34Richard M. Karp [69] [80]
35Simon Kasif [73]
36Uri Keich [50] [51] [53] [60] [82]
37C. G. Kozhukhin [1] [3]
38Eugene L. Lawler [13] [26]
39V. F. Lebedev [14]
40Hon Wai Leong (Hon-Wai Leong) [74] [77]
41H. F. Lewis [23]
42Ming Li [49] [69] [80]
43Roger G. Linington [88]
44Robert J. Lipshutz [11]
45Cheng-Pin Liu [31]
46L. V. Lunovskaya [14]
47Ion I. Mandoiu [52] [59] [63]
48Matthias Mann [89]
49Dario Meluzzi [88]
50Jill P. Mesirov [73]
51Webb Miller [12]
52Andrey A. Mironov [14] [25] [34] [35]
53Satoru Miyano [73]
54Zufar Mulyukov [55]
55Julio Ng [88]
56Kang Ning [74] [77]
57Jesper V. Olsen [89]
58Mike Paterson [38] [44]
59Qian Peng [90]
60Alkes L. Price [62] [71]
61Sriram Ramabhadran [62]
62Benjamin J. Raphael [61] [67]
63Sherief Reda [52] [59] [63]
64Mikhail A. Roytberg [34]
65Süleyman Cenk Sahinalp [38] [44]
66Ron Shamir [33] [41] [49] [69] [80] [83]
67Steven Skiena [23]
68Elizabeth Sweedyk [38] [44]
69Sing-Hoi Sze [27] [30] [31] [34] [43] [54] [57]
70Chris L. Tang [40] [42]
71Haixu Tang [46] [48] [57] [65] [66] [82]
72Stephen Tanner [70] [72]
73Glenn Tesler [58] [66] [90]
74M. E. Truchan [14]
75Dekel Tsur [72] [75]
76James E. Vath [36]
77Martin Vingron [8]
78Stanislav Volik [61]
79Michael S. Waterman [5] [9] [16] [20] [28] [46] [73] [78]
80Guorong Xu [31]
81Ebrahim Zandi [72]
82Alexander Zelikovsky [52] [59] [63]
83Degui Zhi [82]

Colors in the list of coauthors

Copyright © Tue Nov 3 08:52:44 2009 by Michael Ley (ley@uni-trier.de)