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Christine A. Orengo Vis

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*2009
34EESarah Hunter, Rolf Apweiler, Teresa K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Peer Bork, Ujjwal Das, Louise Daugherty, Lauranne Duquenne, Robert D. Finn, Julian Gough, Daniel H. Haft, Nicolas Hulo, Daniel Kahn, Elizabeth Kelly, Aurélie Laugraud, Ivica Letunic, David Lonsdale, Rodrigo Lopez, Martin Madera, John Maslen, Craig McAnulla, Jennifer McDowall, Jaina Mistry, Alex Mitchell, Nicola J. Mulder, Darren A. Natale, Christine A. Orengo, Antony F. Quinn, Jeremy D. Selengut, Christian J. A. Sigrist, Manjula Thimma, Paul D. Thomas, Franck Valentin, Derek Wilson, Cathy H. Wu, Corin Yeats: InterPro: the integrative protein signature database. Nucleic Acids Research 37(Database-Issue): 211-215 (2009)
33EEAlison L. Cuff, Ian Sillitoe, Tony Lewis, Oliver Redfern, Richard Garratt, Janet M. Thornton, Christine A. Orengo: The CATH classification revisited - architectures reviewed and new ways to characterize structural divergence in superfamilies. Nucleic Acids Research 37(Database-Issue): 310-314 (2009)
2008
32EECorin Yeats, Jonathan Lees, Adam Reid, Paul Kellam, Nigel J. Martin, Xinhui Liu, Christine A. Orengo: Gene3D: comprehensive structural and functional annotation of genomes. Nucleic Acids Research 36(Database-Issue): 414-418 (2008)
31EEBenoit H. Dessailly, Marc F. Lensink, Christine A. Orengo, Shoshana J. Wodak: LigASite - a database of biologically relevant binding sites in proteins with known apo-structures. Nucleic Acids Research 36(Database-Issue): 667-673 (2008)
30EEAnna E. Lobley, Timothy Nugent, Christine A. Orengo, David T. Jones: FFPred: an integrated feature-based function prediction server for vertebrate proteomes. Nucleic Acids Research 36(Web-Server-Issue): 297-302 (2008)
29EEJennifer A. Siepen, Khalid Belhajjame, Julian N. Selley, Suzanne M. Embury, Norman W. Paton, Carole A. Goble, Stephen G. Oliver, Robert Stevens, Lucas Zamboulis, Nigel J. Martin, Alexandra Poulovassilis, Philip Jones, Richard Côté, Henning Hermjakob, Melissa M. Pentony, David T. Jones, Christine A. Orengo, Simon J. Hubbard: ISPIDER Central: an integrated database web-server for proteomics. Nucleic Acids Research 36(Web-Server-Issue): 485-490 (2008)
2007
28EEAndrew P. Harrison, Caroline E. Johnston, Christine A. Orengo: Establishing a major cause of discrepancy in the calibration of Affymetrix GeneChips. BMC Bioinformatics 8: (2007)
27EERussell L. Marsden, Tony A. Lewis, Christine A. Orengo: Towards a comprehensive structural coverage of completed genomes: a structural genomics viewpoint. BMC Bioinformatics 8: (2007)
26EEAdam James Reid, Corin Yeats, Christine A. Orengo: Methods of remote homology detection can be combined to increase coverage by 10% in the midnight zone. Bioinformatics 23(18): 2353-2360 (2007)
25EENicola J. Mulder, Rolf Apweiler, Teresa K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Peer Bork, Virginie Buillard, Lorenzo Cerutti, Richard R. Copley, Emmanuel Courcelle, Ujjwal Das, Louise Daugherty, Mark Dibley, Robert D. Finn, Wolfgang Fleischmann, Julian Gough, Daniel H. Haft, Nicolas Hulo, Sarah Hunter, Daniel Kahn, Alexander Kanapin, Anish Kejariwal, Alberto Labarga, Petra S. Langendijk-Genevaux, David Lonsdale, Rodrigo Lopez, Ivica Letunic, Martin Madera, John Maslen, Craig McAnulla, Jennifer McDowall, Jaina Mistry, Alex Mitchell, Anastasia N. Nikolskaya, Sandra E. Orchard, Christine A. Orengo, Robert Petryszak, Jeremy D. Selengut, Christian J. A. Sigrist, Paul D. Thomas, Franck Valentin, Derek Wilson, Cathy H. Wu, Corin Yeats: New developments in the InterPro database. Nucleic Acids Research 35(Database-Issue): 224-228 (2007)
24EELesley H. Greene, Tony E. Lewis, Sarah Addou, Alison L. Cuff, Timothy Dallman, Mark Dibley, Oliver Redfern, Frances M. G. Pearl, Rekha Nambudiry, Adam Reid, Ian Sillitoe, Corin Yeats, Janet M. Thornton, Christine A. Orengo: The CATH domain structure database: new protocols and classification levels give a more comprehensive resource for exploring evolution. Nucleic Acids Research 35(Database-Issue): 291-297 (2007)
2006
23EEMichael Hirsch, Allan Tucker, Stephen Swift, Nigel J. Martin, Christine A. Orengo, Paul Kellam, Xiaohui Liu: Improved Robustness in Time Series Analysis of Gene Expression Data by Polynomial Model Based Clustering. CompLife 2006: 1-10
22EECorin Yeats, Michael Maibaum, Russell L. Marsden, Mark Dibley, David Lee, Sarah Addou, Christine A. Orengo: Gene3D: modelling protein structure, function and evolution. Nucleic Acids Research 34(Database-Issue): 281-284 (2006)
2005
21EEMichael Maibaum, Lucas Zamboulis, Galia Rimon, Christine A. Orengo, Nigel J. Martin, Alexandra Poulovassilis: Cluster Based Integration of Heterogeneous Biological Databases Using the AutoMed Toolkit. DILS 2005: 191-207
20EEFrances M. G. Pearl, Annabel E. Todd, Ian Sillitoe, Mark Dibley, Oliver Redfern, Tony E. Lewis, Christopher Bennett, Russell L. Marsden, Alastair Grant, David Lee, Adrian Akpor, Michael Maibaum, Andrew P. Harrison, Timothy Dallman, Gabrielle A. Reeves, Ilhem Diboun, Sarah Addou, Stefano Lise, Caroline E. Johnston, Antonio Sillero, Janet M. Thornton, Christine A. Orengo: The CATH Domain Structure Database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis. Nucleic Acids Research 33(Database-Issue): 247-251 (2005)
2004
19EEMichael Maibaum, Galia Rimon, Christine A. Orengo, Nigel J. Martin, Alexandra Poulovassilis: BioMap: Gene Family based Integration of Heterogeneous Biological Databases Using AutoMed Metadata. DEXA Workshops 2004: 384-388
18EEDavid Lee, Alastair Grant, Ian Sillitoe, Mark Dibley, Juan Garcia Ranea, Christine A. Orengo: A structural perspective on genome evolution. RECOMB 2004: 336
17 Juan Garcia Ranea, Alastair Grant, Janet M. Thornton, Christine A. Orengo: Microeconomic Principles Explain an Optimal Genome Size in Bacteria. Spanish Bioinformatics Conference 2004: 43
16 Paul Kellam, Stephen Swift, Allan Tucker, Veronica Vinciotti, Nigel J. Martin, Christine A. Orengo, Xiaohui Liu: Consensus Clustering and Functional Interpretation of Gene Expression Data. Spanish Bioinformatics Conference 2004: 6
15EEJames E. Bray, Russell L. Marsden, Stuart C. G. Rison, Alexei Savchenko, Aled M. Edwards, Janet M. Thornton, Christine A. Orengo: A practical and robust sequence search strategy for structural genomics target selection. Bioinformatics 20(14): 2288-2295 (2004)
14 David A. Lee, Sandrine Fefeu, Adrian A. Edo-Ukeh, Christine A. Orengo, Christine Slingsby: EyeSite: a semi-automated database of protein families in the eye. Nucleic Acids Research 32(Database-Issue): 148-152 (2004)
2003
13 Christine A. Orengo: A Structural Perspective on Genome Evolution(Invited Talk). German Conference on Bioinformatics 2003: 109-110
12 Andrew P. Harrison, Frances M. G. Pearl, Ian Sillitoe, Tim Slidel, Richard Mott, Janet M. Thornton, Christine A. Orengo: Recognizing the fold of a protein structure. Bioinformatics 19(14): 1748-1759 (2003)
11 Frances M. G. Pearl, C. F. Bennett, James E. Bray, Andrew P. Harrison, Nigel J. Martin, Adrian J. Shepherd, Ian Sillitoe, Janet M. Thornton, Christine A. Orengo: The CATH database: an extended protein family resource for structural and functional genomics. Nucleic Acids Research 31(1): 452-455 (2003)
10 Daniel W. A. Buchan, Stuart C. G. Rison, James E. Bray, David Lee, Frances M. G. Pearl, Janet M. Thornton, Christine A. Orengo: Gene3D: structural assignments for the biologist and bioinformaticist alike. Nucleic Acids Research 31(1): 469-473 (2003)
2002
9 Adrian J. Shepherd, Nigel J. Martin, Roger G. Johnson, Paul Kellam, Christine A. Orengo: PFDB: a generic protein family database integrating the CATH domain structure database with sequence based protein family resources. Bioinformatics 18(12): 1666-1672 (2002)
8EEPaul Kellam, Xiaohui Liu, Nigel J. Martin, Christine A. Orengo, Stephen Swift, Allan Tucker: A framework for modelling virus gene expression data. Intell. Data Anal. 6(3): 267-279 (2002)
2001
7EEPaul Kellam, Xiaohui Liu, Nigel J. Martin, Christine A. Orengo, Stephen Swift, Allan Tucker: A Framework for Modelling Short, High-Dimensional Multivariate Time Series: Preliminary Results in Virus Gene Expression Data Analysis. IDA 2001: 218-227
6 M. Mar Albà, David Lee, Frances M. G. Pearl, Adrian J. Shepherd, Nigel J. Martin, Christine A. Orengo, Paul Kellam: VIDA: a virus database system for the organization of animal virus genome open reading frames. Nucleic Acids Research 29(1): 133-136 (2001)
5 Frances M. G. Pearl, Nigel J. Martin, James E. Bray, Daniel W. A. Buchan, Andrew P. Harrison, David Lee, Gabrielle A. Reeves, Adrian J. Shepherd, Ian Sillitoe, Annabel E. Todd, Janet M. Thornton, Christine A. Orengo: A rapid classification protocol for the CATH Domain Database to support structural genomics. Nucleic Acids Research 29(1): 223-227 (2001)
2000
4 Frances M. G. Pearl, David Lee, James E. Bray, Ian Sillitoe, Annabel E. Todd, Andrew P. Harrison, Janet M. Thornton, Christine A. Orengo: Assigning genomic sequences to CATH. Nucleic Acids Research 28(1): 277-282 (2000)
1999
3 Christine A. Orengo, Frances M. G. Pearl, James E. Bray, Annabel E. Todd, A. C. Martin, Loredana Lo Conte, Janet M. Thornton: The CATH Database provides insights into protein structure/function relationships. Nucleic Acids Research 27(1): 275-279 (1999)
1998
2 Janet M. Thornton, Andrew C. R. Martin, Christine A. Orengo, Duncan Milburn, Roman A. Laskowski: [Invited Lecture] Protein Folds and Functions. German Conference on Bioinformatics 1998
1996
1EENigel P. Brown, Christine A. Orengo, William R. Taylor: A Protein Structure Comparison Methodology. Computers & Chemistry 20(3): 359-380 (1996)

Coauthor Index

1Sarah Addou [20] [22] [24]
2Adrian Akpor [20]
3M. Mar Albà [6]
4Rolf Apweiler [25] [34]
5Terri K. Attwood (Teresa K. Attwood) [25] [34]
6Amos Bairoch [25] [34]
7Alex Bateman [25] [34]
8Khalid Belhajjame [29]
9C. F. Bennett [11]
10Christopher Bennett [20]
11David Binns [25] [34]
12Peer Bork [25] [34]
13James E. Bray [3] [4] [5] [10] [11] [15]
14Nigel P. Brown [1]
15Daniel W. A. Buchan [5] [10]
16Virginie Buillard [25]
17Lorenzo Cerutti [25]
18Loredana Lo Conte [3]
19Richard R. Copley [25]
20Richard Côté [29]
21Emmanuel Courcelle [25]
22Alison L. Cuff [24] [33]
23Timothy Dallman [20] [24]
24Ujjwal Das [25] [34]
25Louise Daugherty [25] [34]
26Benoit H. Dessailly [31]
27Mark Dibley [18] [20] [22] [24] [25]
28Ilhem Diboun [20]
29Lauranne Duquenne [34]
30Adrian A. Edo-Ukeh [14]
31Aled M. Edwards [15]
32Suzanne M. Embury [29]
33Sandrine Fefeu [14]
34Robert D. Finn [25] [34]
35Wolfgang Fleischmann [25]
36Richard Garratt [33]
37Carole A. Goble [29]
38Julian Gough [25] [34]
39Alastair Grant [17] [18] [20]
40Lesley H. Greene [24]
41Daniel H. Haft [25] [34]
42Andrew P. Harrison [4] [5] [11] [12] [20] [28]
43Henning Hermjakob [29]
44Michael Hirsch [23]
45Simon J. Hubbard [29]
46Nicolas Hulo [25] [34]
47Sarah Hunter [25] [34]
48Roger G. Johnson [9]
49Caroline E. Johnston [20] [28]
50David T. Jones [29] [30]
51Philip Jones [29]
52Daniel Kahn [25] [34]
53Alexander Kanapin [25]
54Anish Kejariwal [25]
55Paul Kellam [6] [7] [8] [9] [16] [23] [32]
56Elizabeth Kelly [34]
57Alberto Labarga [25]
58Petra S. Langendijk-Genevaux [25]
59Roman A. Laskowski [2]
60Aurélie Laugraud [34]
61David Lee [4] [5] [6] [10] [18] [20] [22]
62David A. Lee [14]
63Jonathan Lees [32]
64Marc F. Lensink [31]
65Ivica Letunic [25] [34]
66Tony Lewis [33]
67Tony A. Lewis [27]
68Tony E. Lewis [20] [24]
69Stefano Lise [20]
70Xiaohui Liu [7] [8] [16] [23]
71Xinhui Liu [32]
72Anna E. Lobley [30]
73David Lonsdale [25] [34]
74Rodrigo Lopez [25] [34]
75Martin Madera [25] [34]
76Michael Maibaum [19] [20] [21] [22]
77Russell L. Marsden [15] [20] [22] [27]
78A. C. Martin [3]
79Andrew C. R. Martin [2]
80Nigel J. Martin [5] [6] [7] [8] [9] [11] [16] [19] [21] [23] [29] [32]
81John Maslen [25] [34]
82Craig McAnulla [25] [34]
83Jennifer McDowall [25] [34]
84Duncan Milburn [2]
85Jaina Mistry [25] [34]
86Alex Mitchell [25] [34]
87Richard Mott [12]
88Nicola J. Mulder [25] [34]
89Rekha Nambudiry [24]
90Darren A. Natale [34]
91Anastasia N. Nikolskaya [25]
92Timothy Nugent [30]
93Stephen G. Oliver [29]
94Sandra E. Orchard [25]
95Norman W. Paton [29]
96Frances M. G. Pearl [3] [4] [5] [6] [10] [11] [12] [20] [24]
97Melissa M. Pentony [29]
98Robert Petryszak [25]
99Alexandra Poulovassilis [19] [21] [29]
100Antony F. Quinn [34]
101Juan Garcia Ranea [17] [18]
102Oliver Redfern [20] [24] [33]
103Gabrielle A. Reeves [5] [20]
104Adam Reid [24] [32]
105Adam James Reid [26]
106Galia Rimon [19] [21]
107Stuart C. G. Rison [10] [15]
108Alexei Savchenko [15]
109Jeremy D. Selengut [25] [34]
110Julian N. Selley [29]
111Adrian J. Shepherd [5] [6] [9] [11]
112Jennifer A. Siepen [29]
113Christian J. A. Sigrist [25] [34]
114Antonio Sillero [20]
115Ian Sillitoe [4] [5] [11] [12] [18] [20] [24] [33]
116Tim Slidel [12]
117Christine Slingsby [14]
118Robert Stevens (Robert D. Stevens) [29]
119Stephen Swift [7] [8] [16] [23]
120William R. Taylor [1]
121Manjula Thimma [34]
122Paul D. Thomas [25] [34]
123Janet M. Thornton [2] [3] [4] [5] [10] [11] [12] [15] [17] [20] [24] [33]
124Annabel E. Todd [3] [4] [5] [20]
125Allan Tucker [7] [8] [16] [23]
126Franck Valentin [25] [34]
127Veronica Vinciotti [16]
128Derek Wilson [25] [34]
129Shoshana J. Wodak [31]
130Cathy H. Wu [25] [34]
131Corin Yeats [22] [24] [25] [26] [32] [34]
132Lucas Zamboulis [21] [29]

Colors in the list of coauthors

Copyright © Tue Nov 3 08:52:44 2009 by Michael Ley (ley@uni-trier.de)