dblp.uni-trier.dewww.uni-trier.de

William Stafford Noble Vis

List of publications from the DBLP Bibliography Server - FAQ
Coauthor Index - Ask others: ACM DL/Guide - CiteSeerX - CSB - MetaPress - Google - Bing - Yahoo

*2009
58EESheila M. Reynolds, Jeff A. Bilmes, William Stafford Noble: On the Relationship between DNA Periodicity and Local Chromatin Structure. RECOMB 2009: 434-450
57EEIain Melvin, Jason Weston, Christina S. Leslie, William Stafford Noble: RANKPROP: a web server for protein remote homology detection. Bioinformatics 25(1): 121-122 (2009)
56EEJohn Hawkins, Charles E. Grant, William Stafford Noble, Timothy L. Bailey: Assessing phylogenetic motif models for predicting transcription factor binding sites. Bioinformatics 25(12): (2009)
55EELukas Käll, John D. Storey, William Stafford Noble: QVALITY: non-parametric estimation of q-values and posterior error probabilities. Bioinformatics 25(7): 964-966 (2009)
54EETimothy L. Bailey, Mikael Bodén, Fabian A. Buske, Martin Frith, Charles E. Grant, Luca Clementi, Jingyuan Ren, Wilfred W. Li, William Stafford Noble: MEME SUITE: tools for motif discovery and searching. Nucleic Acids Research 37(Web-Server-Issue): 202-208 (2009)
2008
53EENir Yosef, Roded Sharan, William Stafford Noble: Improved network-based identification of protein orthologs. ECCB 2008: 200-206
52EELukas Käll, John D. Storey, William Stafford Noble: Non-parametric estimation of posterior error probabilities associated with peptides identified by tandem mass spectrometry. ECCB 2008: 42-48
51EEAaron A. Klammer, Sheila M. Reynolds, Jeff A. Bilmes, Michael J. MacCoss, William Stafford Noble: Modeling peptide fragmentation with dynamic Bayesian networks for peptide identification. ISMB 2008: 348-356
50EER. E. Thurman, William Stafford Noble, John A. Stamatoyannopoulos: Multi-Scale Correlations in Continuous Genomic Data. Pacific Symposium on Biocomputing 2008: 201-215
49EEIain Melvin, Jason Weston, Christina S. Leslie, William Stafford Noble: Combining classifiers for improved classification of proteins from sequence or structure. BMC Bioinformatics 9: (2008)
48EEHeng Lian, William A. Thompson, Robert Thurman, John A. Stamatoyannopoulos, William Stafford Noble, Charles E. Lawrence: Automated mapping of large-scale chromatin structure in ENCODE. Bioinformatics 24(17): 1911-1916 (2008)
2007
47EEAaron A. Klammer, Xianhua Yi, Michael J. MacCoss, William Stafford Noble: Peptide Retention Time Prediction Yields Improved Tandem Mass Spectrum Identification for Diverse Chromatography Conditions. RECOMB 2007: 459-472
46EEJean-Philippe Vert, Jian Qiu, William Stafford Noble: A new pairwise kernel for biological network inference with support vector machines. BMC Bioinformatics 8(S-10): (2007)
45EEGal Chechik, Christina S. Leslie, William Stafford Noble, Gunnar Rätsch, Quaid Morris, Koji Tsuda: NIPS workshop on New Problems and Methods in Computational Biology. BMC Bioinformatics 8(S-10): (2007)
44EEIain Melvin, Eugene Ie, Rui Kuang, Jason Weston, William Stafford Noble, Christina S. Leslie: SVM-Fold: a tool for discriminative multi-class protein fold and superfamily recognition. BMC Bioinformatics 8(S-4): (2007)
43EENathan Day, Andrew Hemmaplardh, Robert Thurman, John A. Stamatoyannopoulos, William Stafford Noble: Unsupervised segmentation of continuous genomic data. Bioinformatics 23(11): 1424-1426 (2007)
42EEJian Qiu, Martial Hue, Asa Ben-Hur, Jean-Philippe Vert, William Stafford Noble: A structural alignment kernel for protein structures. Bioinformatics 23(9): 1090-1098 (2007)
2006
41EEDarrin P. Lewis, Tony Jebara, William Stafford Noble: Nonstationary kernel combination. ICML 2006: 553-560
40EETobias P. Mann, William Stafford Noble: Efficient identification of DNA hybridization partners in a sequence database. ISMB (Supplement of Bioinformatics) 2006: 350-358
39EEAsa Ben-Hur, William Stafford Noble: Choosing negative examples for the prediction of protein-protein interactions. BMC Bioinformatics 7(S-1): (2006)
38EEJason Weston, Rui Kuang, Christina S. Leslie, William Stafford Noble: Protein Ranking by Semi-Supervised Network Propagation. BMC Bioinformatics 7(S-1): (2006)
37EEDarrin P. Lewis, Tony Jebara, William Stafford Noble: Support vector machine learning from heterogeneous data: an empirical analysis using protein sequence and structure. Bioinformatics 22(22): 2753-2760 (2006)
36EEJean-Philippe Vert, Jian Qiu, William Stafford Noble: Metric learning pairwise kernel for graph inference CoRR abs/q-bio/0610040: (2006)
35EETobias P. Mann, Richard Humbert, John A. Stamatoyannopoulos, William Stafford Noble: Automated Validation of Polymerase Chain Reaction Amplicon Melting Curves. J. Bioinformatics and Computational Biology 4(2): 299-316 (2006)
2005
34EEWill Sheffler, Eli Upfal, John Sedivy, William Stafford Noble: A Learned Comparative Expression Measure for Affymetrix GeneChip DNA Microarrays. CSB 2005: 144-154
33EEAaron A. Klammer, Christine C. Wu, Michael J. MacCoss, William Stafford Noble: Peptide Charge State Determination for Low-Resolution Tandem Mass Spectra. CSB 2005: 175-185
32EETobias P. Mann, Richard Humbert, John A. Stamatoyannopoulos, William Stafford Noble: Automated Validation of Polymerase Chain Reactions Using Amplicon Melting Curves. CSB 2005: 377-385
31EEEugene Ie, Jason Weston, William Stafford Noble, Christina S. Leslie: Multi-class protein fold recognition using adaptive codes. ICML 2005: 329-336
30EEWilliam Stafford Noble, Scott Kuehn, Robert Thurman, Man Yu, John A. Stamatoyannopoulos: Predicting the in vivo signature of human gene regulatory sequence. ISMB (Supplement of Bioinformatics) 2005: 328-343
29EEAsa Ben-Hur, William Stafford Noble: Kernel methods for predicting protein-protein interactions. ISMB (Supplement of Bioinformatics) 2005: 38-46
28EEJean-Philippe Vert, Robert Thurman, William Stafford Noble: Kernels for gene regulatory regions. NIPS 2005
27EEJason Weston, Christina S. Leslie, Eugene Ie, Dengyong Zhou, André Elisseeff, William Stafford Noble: Semi-supervised protein classification using cluster kernels. Bioinformatics 21(15): 3241-3247 (2005)
26EERui Kuang, Jason Weston, William Stafford Noble, Christina S. Leslie: Motif-based protein ranking by network propagation. Bioinformatics 21(19): 3711-3718 (2005)
25EECharles X. Ling, William Stafford Noble, Qiang Yang: Guest Editors' Introduction to the Special Issue: Machine Learning for Bioinformatics - Part 1. IEEE/ACM Trans. Comput. Biology Bioinform. 2(2): 81-82 (2005)
24EECharles X. Ling, William Stafford Noble, Qiang Yang: Guest Editor's Introduction to the Special Issue: Machine Learning for Bioinformatics-Part 2. IEEE/ACM Trans. Comput. Biology Bioinform. 2(3): 177-178 (2005)
2004
23EEKoji Tsuda, William Stafford Noble: Learning kernels from biological networks by maximizing entropy. ISMB/ECCB (Supplement of Bioinformatics) 2004: 326-333
22EEGert R. G. Lanckriet, Minghua Deng, Nello Cristianini, Michael I. Jordan, William Stafford Noble: Kernel-Based Data Fusion and Its Application to Protein Function Prediction in Yeast. Pacific Symposium on Biocomputing 2004: 300-311
21EEWei Wu, William Stafford Noble: Genomic data visualization on the Web. Bioinformatics 20(11): 1804-1805 (2004)
20EEGert R. G. Lanckriet, Tijl De Bie, Nello Cristianini, Michael I. Jordan, William Stafford Noble: A statistical framework for genomic data fusion. Bioinformatics 20(16): 2626-2635 (2004)
19EEChristina S. Leslie, Eleazar Eskin, Adiel Cohen, Jason Weston, William Stafford Noble: Mismatch string kernels for discriminative protein classification. Bioinformatics 20(4): (2004)
18EEPaul Pavlidis, Ilan Wapinski, William Stafford Noble: Support vector machine classification on the web. Bioinformatics 20(4): (2004)
2003
17 Timothy L. Bailey, William Stafford Noble: Searching for statistically significant regulatory modules. ECCB 2003: 16-25
16EEJason Weston, Christina S. Leslie, Dengyong Zhou, André Elisseeff, William Stafford Noble: Semi-supervised Protein Classification Using Cluster Kernels. NIPS 2003
15 Paul Pavlidis, Qinghong Li, William Stafford Noble: The effect of replication on gene expression microarray experiments. Bioinformatics 19(13): 1620-1627 (2003)
14 Shawn M. Gomez, William Stafford Noble, Andrey Rzhetsky: Learning to predict protein-protein interactions from protein sequences. Bioinformatics 19(15): 1875-1881 (2003)
13 Jie Qin, Darrin P. Lewis, William Stafford Noble: Kernel hierarchical gene clustering from microarray expression data. Bioinformatics 19(16): 2097-2104 (2003)
12 Paul Pavlidis, William Stafford Noble: Matrix2png: a utility for visualizing matrix data. Bioinformatics 19(2): 295-296 (2003)
11 Eleazar Eskin, William Stafford Noble, Yoram Singer: Protein Family Classification Using Sparse Markov Transducers. Journal of Computational Biology 10(2): 187-214 (2003)
10EELi Liao, William Stafford Noble: Combining Pairwise Sequence Similarity and Support Vector Machines for Detecting Remote Protein Evolutionary and Structural Relationships. Journal of Computational Biology 10(6): 857-868 (2003)
2002
9EEBernhard Schölkopf, Jason Weston, Eleazar Eskin, Christina S. Leslie, William Stafford Noble: A Kernel Approach for Learning from almost Orthogonal Patterns. ECML 2002: 511-528
8EEChristina S. Leslie, Eleazar Eskin, Jason Weston, William Stafford Noble: Mismatch String Kernels for SVM Protein Classification. NIPS 2002: 1417-1424
7EEBernhard Schölkopf, Jason Weston, Eleazar Eskin, Christina S. Leslie, William Stafford Noble: A Kernel Approach for Learning from Almost Orthogonal Patterns. PKDD 2002: 494-511
6EEPaul Pavlidis, Darrin P. Lewis, William Stafford Noble: Exploring Gene Expression Data with Class Scores. Pacific Symposium on Biocomputing 2002: 474-485
5EEChristina S. Leslie, Eleazar Eskin, William Stafford Noble: The Spectrum Kernel: A String Kernel for SVM Protein Classification. Pacific Symposium on Biocomputing 2002: 566-575
4EELi Liao, William Stafford Noble: Combining pairwise sequence similarity and support vector machines for remote protein homology detection. RECOMB 2002: 225-232
3 Paul Pavlidis, Jason Weston, Jinsong Cai, William Stafford Noble: Learning Gene Functional Classifications from Multiple Data Types. Journal of Computational Biology 9(2): 401-411 (2002)
2 Eleazar Eskin, William Stafford Noble, Yoram Singer: Using Substitution Matrices to Estimate Probability Distributions for Biological Sequences. Journal of Computational Biology 9(6): 775-792 (2002)
2001
1EEPaul Pavlidis, Christopher Tang, William Stafford Noble: Classification of genes using probabilistic models of microarray expression profiles. BIOKDD 2001: 15-21

Coauthor Index

1Timothy L. Bailey [17] [54] [56]
2Asa Ben-Hur [29] [39] [42]
3Tijl De Bie [20]
4Jeff A. Bilmes (Jeff Bilmes) [51] [58]
5Mikael Bodén [54]
6Fabian A. Buske [54]
7Jinsong Cai [3]
8Gal Chechik [45]
9Luca Clementi [54]
10Adiel Cohen [19]
11Nello Cristianini [20] [22]
12Nathan Day [43]
13Minghua Deng [22]
14André Elisseeff [16] [27]
15Eleazar Eskin [2] [5] [7] [8] [9] [11] [19]
16Martin Frith [54]
17Shawn M. Gomez [14]
18Charles E. Grant [54] [56]
19John Hawkins [56]
20Andrew Hemmaplardh [43]
21Martial Hue [42]
22Richard Humbert [32] [35]
23Eugene Ie [27] [31] [44]
24Tony Jebara [37] [41]
25Michael I. Jordan [20] [22]
26Lukas Käll [52] [55]
27Aaron A. Klammer [33] [47] [51]
28Rui Kuang [26] [38] [44]
29Scott Kuehn [30]
30Gert R. G. Lanckriet [20] [22]
31Charles E. Lawrence [48]
32Christina S. Leslie [5] [7] [8] [9] [16] [19] [26] [27] [31] [38] [44] [45] [49] [57]
33Darrin P. Lewis [6] [13] [37] [41]
34Qinghong Li [15]
35Wilfred W. Li [54]
36Heng Lian [48]
37Li Liao [4] [10]
38Charles X. Ling [24] [25]
39Michael J. MacCoss [33] [47] [51]
40Tobias P. Mann [32] [35] [40]
41Iain Melvin [44] [49] [57]
42Quaid Morris [45]
43Paul Pavlidis [1] [3] [6] [12] [15] [18]
44Jie Qin [13]
45Jian Qiu [36] [42] [46]
46Gunnar Rätsch [45]
47Jingyuan Ren [54]
48Sheila M. Reynolds [51] [58]
49Andrey Rzhetsky [14]
50Bernhard Schölkopf [7] [9]
51John Sedivy [34]
52Roded Sharan [53]
53Will Sheffler [34]
54Yoram Singer [2] [11]
55John A. Stamatoyannopoulos [30] [32] [35] [43] [48] [50]
56John D. Storey [52] [55]
57Christopher Tang [1]
58William A. Thompson [48]
59R. E. Thurman [50]
60Robert Thurman [28] [30] [43] [48]
61Koji Tsuda [23] [45]
62Eli Upfal [34]
63Jean-Philippe Vert [28] [36] [42] [46]
64Ilan Wapinski [18]
65Jason Weston [3] [7] [8] [9] [16] [19] [26] [27] [31] [38] [44] [49] [57]
66Christine C. Wu [33]
67Wei Wu [21]
68Qiang Yang [24] [25]
69Xianhua Yi [47]
70Nir Yosef [53]
71Man Yu [30]
72Dengyong Zhou [16] [27]

Colors in the list of coauthors

Copyright © Tue Nov 3 08:52:44 2009 by Michael Ley (ley@uni-trier.de)