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Eugene W. Myers Vis

Gene Myers

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*2009
85EEMarie-France Sagot, B. J. Morrison McKay, Gene Myers: ISMB/ECCB 2009 Stockholm. Bioinformatics 25(12): 1570-1573 (2009)
84EEHanchuan Peng, Fuhui Long, Eugene W. Myers: VANO: a volume-object image annotation system. Bioinformatics 25(5): 695-697 (2009)
2008
83EEFuhui Long, Hanchuan Peng, Xiao Liu, Stuart K. Kim, Gene Myers: Automatic Recognition of Cells (ARC) for 3D Images of C. elegans. RECOMB 2008: 128-139
82EEHanchuan Peng, Fuhui Long, Xiao Liu, Stuart K. Kim, Eugene W. Myers: Straightening Caenorhabditis elegans images. Bioinformatics 24(2): 234-242 (2008)
2007
81EEHanchuan Peng, Fuhui Long, Eugene W. Myers: Straightening Worm Images. ISBI 2007: 292-295
80EEFuhui Long, Hanchuan Peng, Eugene W. Myers: Automatic Segmentation of Nuclei in 3d Microscopy Images of C.Elegans. ISBI 2007: 536-539
79EEPaul Medvedev, Konstantinos Georgiou, Gene Myers, Michael Brudno: Computability of Models for Sequence Assembly. WABI 2007: 289-301
78EEGad M. Landau, Eugene W. Myers, Michal Ziv-Ukelson: Two algorithms for LCS Consecutive Suffix Alignment. J. Comput. Syst. Sci. 73(7): 1095-1117 (2007)
2006
77EEGene Myers: Imaging-Based Systems Biology. HiPC 2006: 5
76EEHanchuan Peng, Fuhui Long, Michael B. Eisen, Eugene W. Myers: Clustering gene expression patterns of fly embryos. ISBI 2006: 1144-1147
75EETien-ho Lin, Eugene W. Myers, Eric P. Xing: Interpreting anonymous DNA samples from mass disasters - probabilistic forensic inference using genetic markers. ISMB (Supplement of Bioinformatics) 2006: 298-306
74EEKim R. Rasmussen, Jens Stoye, Eugene W. Myers: Efficient q-Gram Filters for Finding All epsilon-Matches over a Given Length. Journal of Computational Biology 13(2): 296-308 (2006)
2005
73 Rita Casadio, Gene Myers: Algorithms in Bioinformatics, 5th International Workshop, WABI 2005, Mallorca, Spain, October 3-6, 2005, Proceedings Springer 2005
72EEEugene W. Myers: The fragment assembly string graph. ECCB/JBI 2005: 85
71EERobert C. Edgar, Eugene W. Myers: PILER: identification and classification of genomic repeats. ISMB (Supplement of Bioinformatics) 2005: 152-158
70EERoded Sharan, Eugene W. Myers: A motif-based framework for recognizing sequence families. ISMB (Supplement of Bioinformatics) 2005: 387-393
69EEKim R. Rasmussen, Jens Stoye, Eugene W. Myers: Efficient q-Gram Filters for Finding All epsilon-Matches over a Given Length. RECOMB 2005: 189-203
2004
68EEGad M. Landau, Eugene W. Myers, Michal Ziv-Ukelson: Two Algorithms for LCS Consecutive Suffix Alignment. CPM 2004: 173-193
67EEEugene W. Myers: Whole Genome Sequencing, Comparative Genomics, and Systems Biology. CSB 2004: 4
66EEHanchuan Peng, Eugene W. Myers: Comparing in situ mRNA expression patterns of drosophila embryos. RECOMB 2004: 157-166
2003
65 Gene Myers: ISMB 2003 - Editorial. ISMB (Supplement of Bioinformatics) 2003: 1-2
64 Gene Myers: Advances in DNA Sequencing. PCK50 2003: 9
63 Gene Myers, Richard Durbin: A Table-Driven, Full-Sensitivity Similarity Search Algorithm. Journal of Computational Biology 10(2): 103-118 (2003)
2002
62EEGene Myers: The Assembly of the Human and Mouse Genomes. COCOON 2002: 1
61EEGene Myers, Richard Durbin: Invited Lecture - Accelerating Smith-Waterman Searches. WABI 2002: 331-342
60EEDaniel H. Huson, Knut Reinert, Eugene W. Myers: The greedy path-merging algorithm for contig scaffolding. J. ACM 49(5): 603-615 (2002)
2001
59 Daniel H. Huson, Knut Reinert, Saul A. Kravitz, Karin A. Remington, Arthur L. Delcher, Ian M. Dew, Michael Flanigan, Aaron L. Halpern, Zhongwu Lai, Clark M. Mobarry, Granger G. Sutton, Eugene W. Myers: Design of a compartmentalized shotgun assembler for the human genome. ISMB (Supplement of Bioinformatics) 2001: 132-139
58EEDaniel H. Huson, Knut Reinert, Eugene W. Myers: The greedy path-merging algorithm for sequence assembly. RECOMB 2001: 157-163
57EEGene Myers: Comparing sequence scaffolds. RECOMB 2001: 224-230
56EEDaniel H. Huson, Aaron L. Halpern, Zhongwu Lai, Eugene W. Myers, Knut Reinert, Granger G. Sutton: Comparing Assemblies Using Fragments and Mate-Pairs. WABI 2001: 294-306
2000
55EEGene Myers: The whole genome assembly of Drosophila. SODA 2000: 753
1999
54 Gene Myers: A Whole Genome Assembler for Drosophila. German Conference on Bioinformatics 1999: 44
53 Gene Myers: A Dataset Generator for Whole Genome Shotgun Sequencing. ISMB 1999: 202-210
52EEEric L. Anson, Eugene W. Myers: Algorithms for whole genome shotgun sequencing. RECOMB 1999: 1-9
51EEGene Myers: Progress toward the whole-genome shotgun sequencing of Drosophila. RECOMB 1999: 279
50EEGene Myers: A Fast Bit-Vector Algorithm for Approximate String Matching Based on Dynamic Programming. J. ACM 46(3): 395-415 (1999)
1998
49 Gene Myers: A Fast Bit-Vector Algorithm for Approximate String Matching Based on Dynamic Programming. CPM 1998: 1-13
48 Eugene W. Myers, Paulo Oliva, Katia S. Guimarães: Reporting Exact and Approximate Regular Expression Matches. CPM 1998: 91-103
47EEMarie-France Sagot, Eugene W. Myers: Identifying satellites in nucleic acid sequences. RECOMB 1998: 234-242
46 Samuel Levy, L. Compagnoni, Eugene W. Myers, Gary D. Stormo: Xlandscape: the graphical display of word frequencies in sequences. Bioinformatics 14(1): 74-80 (1998)
45 Marie-France Sagot, Eugene W. Myers: Identifying Satellites and Periodic Repetitions in Biological Sequences. Journal of Computational Biology 5(3): 539-554 (1998)
44 Gad M. Landau, Eugene W. Myers, Jeanette P. Schmidt: Incremental String Comparison. SIAM J. Comput. 27(2): 557-582 (1998)
1997
43 Stefan Kurtz, Gene Myers: Estimating the Probability of Approximate Matches. CPM 1997: 52-64
42EEMudita Jain, Eugene W. Myers: Algorithms for computing and integrating physical maps using unique probes. RECOMB 1997: 151-161
41EEGene Myers, Sanford Selznick, Zheng Zhang, Webb Miller: Progressive multiple alignment with constraints. RECOMB 1997: 220-225
40EEEric L. Anson, Eugene W. Myers: ReAligner: a program for refining DNA sequence multi-alignments. RECOMB 1997: 9-16
39 Eric L. Anson, Eugene W. Myers: ReAligner: A Program for Refining DNA Sequence Multi-Alignments. Journal of Computational Biology 4(3): 369-384 (1997)
38 Mudita Jain, Eugene W. Myers: Algorithms for Computing and Integrating Physical Maps Using Unique Probes. Journal of Computational Biology 4(4): 449-466 (1997)
1996
37 Daniel S. Hirschberg, Eugene W. Myers: Combinatorial Pattern Matching, 7th Annual Symposium, CPM 96, Laguna Beach, California, USA, June 10-12, 1996, Proceedings Springer 1996
36 Sun Wu, Udi Manber, Eugene W. Myers: A Subquadratic Algorithm for Approximate Limited Expression Matching. Algorithmica 15(1): 50-67 (1996)
35 Gene Myers, Sanford Selznick, Zheng Zhang, Webb Miller: Progressive Multiple Alignment with Constraints. Journal of Computational Biology 3(4): 563-572 (1996)
34 Sampath Kannan, Eugene W. Myers: An Algorithm for Locating Nonoverlapping Regions of Maximum Alignment Score. SIAM J. Comput. 25(3): 648-662 (1996)
1995
33 Gene Myers, Webb Miller: Chaining Multiple-Alignment Fragments in Sub-Quadratic Time. SODA 1995: 38-47
32 Eugene W. Myers: Guest Editor's Foreword: Special Issue on Computational Molecular Biology. Algorithmica 13(1/2): 1-6 (1995)
31 James R. Knight, Eugene W. Myers: Super-Pattern Matching. Algorithmica 13(1/2): 211-243 (1995)
30 John D. Kececioglu, Eugene W. Myers: Combinatiorial Algorithms for DNA Sequence Assembly. Algorithmica 13(1/2): 7-51 (1995)
29 James R. Knight, Eugene W. Myers: Approximate Regular Expression Pattern Matching with Concave Gap Penalties. Algorithmica 14(1): 85-121 (1995)
28EEGene Myers: Approximately Matching Context-Free Languages. Inf. Process. Lett. 54(2): 85-92 (1995)
27 Sun Wu, Udi Manber, Eugene W. Myers: A Subquadratic Algorithm for Approximate Regular Expression Matching. J. Algorithms 19(3): 346-360 (1995)
26 Mudita Jain, Eugene W. Myers: A Note on Scoring Clones Given a Probe Ordering. Journal of Computational Biology 2(1): 33-37 (1995)
25 Eugene W. Myers: Toward Simplifying and Accurately Formulating Fragment Assembly. Journal of Computational Biology 2(2): 275-290 (1995)
1994
24 Eugene W. Myers: A Sublinear Algorithm for Approximate Keyword Searching. Algorithmica 12(4/5): 345-374 (1994)
1993
23 Sampath Kannan, Eugene W. Myers: An Algorithm for Locating Non-Overlapping Regions of Maximum Alignment Score. CPM 1993: 74-86
22 Udi Manber, Eugene W. Myers: Suffix Arrays: A New Method for On-Line String Searches. SIAM J. Comput. 22(5): 935-948 (1993)
1992
21 James R. Knight, Eugene W. Myers: Approximate Regular Expression Pattern Matching with Concave Gap Penalties. CPM 1992: 67-78
20 Gene Myers: Approximate Matching of Network Expressions with Spacers. LATIN 1992: 372-386
19EEEugene W. Myers: A Four Russians Algorithm for Regular Expression Pattern Matching. J. ACM 39(2): 430-448 (1992)
1990
18 Udi Manber, Gene Myers: Suffix Arrays: A New Method for On-Line String Searches. SODA 1990: 319-327
17 Sun Wu, Udi Manber, Gene Myers, Webb Miller: An O(NP) Sequence Comparison Algorithm. Inf. Process. Lett. 35(6): 317-323 (1990)
1989
16EEEugene W. Myers, Webb Miller: Row Replacement Algorithms for Screen Editors. ACM Trans. Program. Lang. Syst. 11(1): 33-56 (1989)
1988
15 Eugene W. Myers, Webb Miller: Optimal alignments in linear space. Computer Applications in the Biosciences 4(1): 11-17 (1988)
14 J. D. Hall, Eugene W. Myers: A software tool for finding locally optimal alignments in protein and nucleic acid sequences. Computer Applications in the Biosciences 4(1): 35-40 (1988)
13 Webb Miller, Eugene W. Myers: A Simple Row-replacement Method. Softw., Pract. Exper. 18(7): 597-611 (1988)
1987
12EEChristopher W. Fraser, Eugene W. Myers: An Editor for Revision Control. ACM Trans. Program. Lang. Syst. 9(2): 277-295 (1987)
1986
11 Eugene W. Myers: An O(ND) Difference Algorithm and Its Variations. Algorithmica 1(2): 251-266 (1986)
10 Eugene W. Myers, D. W. Mount: Computer program for the IBM personal computer which searches for approximate matches to short oligonucleotide sequences in long target DNA sequences. Nucleic Acids Research 14(1): 501-508 (1986)
9 Webb Miller, Eugene W. Myers: Side-effects in Automatic File Updating. Softw., Pract. Exper. 16(9): 809-820 (1986)
1985
8 Eugene W. Myers: An O(E log E + I) Expected Time Algorithm for the Planar Segment Intersection Problem. SIAM J. Comput. 14(3): 625-637 (1985)
7 Webb Miller, Eugene W. Myers: A File Comparison Program. Softw., Pract. Exper. 15(11): 1025-1040 (1985)
1984
6 Eugene W. Myers: Efficient Applicative Data Types. POPL 1984: 66-75
5EEChristopher W. Fraser, Eugene W. Myers, Alan L. Wendt: Analyzing and compressing assembly code. SIGPLAN Symposium on Compiler Construction 1984: 117-121
1983
4 Eugene W. Myers: An Applicative Random-Access Stack. Inf. Process. Lett. 17(5): 241-248 (1983)
1981
3 Eugene W. Myers, Leon J. Osterweil: BIGMAC II: A FORTRAN Language Augmentation Tool. ICSE 1981: 410-421
2 Eugene W. Myers: A Precise Interprocedural Data Flow Algorithm. POPL 1981: 219-230
1978
1 Harold N. Gabow, Eugene W. Myers: Finding All Spanning Trees of Directed and Undirected Graphs. SIAM J. Comput. 7(3): 280-287 (1978)

Coauthor Index

1Eric L. Anson [39] [40] [52]
2Michael Brudno [79]
3Rita Casadio [73]
4L. Compagnoni [46]
5Arthur L. Delcher [59]
6Ian M. Dew [59]
7Richard Durbin [61] [63]
8Robert C. Edgar [71]
9Michael B. Eisen [76]
10Michael Flanigan [59]
11Christopher W. Fraser [5] [12]
12Harold N. Gabow [1]
13Konstantinos Georgiou [79]
14Katia S. Guimarães [48]
15J. D. Hall [14]
16Aaron L. Halpern [56] [59]
17Daniel S. Hirschberg [37]
18Daniel H. Huson [56] [58] [59] [60]
19Mudita Jain [26] [38] [42]
20Sampath Kannan [23] [34]
21John D. Kececioglu [30]
22Stuart K. Kim [82] [83]
23James R. Knight [21] [29] [31]
24Saul A. Kravitz [59]
25Stefan Kurtz [43]
26Zhongwu Lai [56] [59]
27Gad M. Landau [44] [68] [78]
28Samuel Levy [46]
29Tien-ho Lin [75]
30Xiao Liu [82] [83]
31Fuhui Long [76] [80] [81] [82] [83] [84]
32Udi Manber [17] [18] [22] [27] [36]
33B. J. Morrison McKay [85]
34Paul Medvedev [79]
35Webb Miller [7] [9] [13] [15] [16] [17] [33] [35] [41]
36Clark M. Mobarry [59]
37D. W. Mount [10]
38Paulo Oliva [48]
39Leon J. Osterweil [3]
40Hanchuan Peng [66] [76] [80] [81] [82] [83] [84]
41Kim R. Rasmussen [69] [74]
42Knut Reinert [56] [58] [59] [60]
43Karin A. Remington [59]
44Marie-France Sagot [45] [47] [85]
45Jeanette P. Schmidt [44]
46Sanford Selznick [35] [41]
47Roded Sharan [70]
48Gary D. Stormo [46]
49Jens Stoye [69] [74]
50Granger G. Sutton [56] [59]
51Alan L. Wendt [5]
52Sun Wu [17] [27] [36]
53Eric P. Xing [75]
54Zheng Zhang [35] [41]
55Michal Ziv-Ukelson [68] [78]

Colors in the list of coauthors

Copyright © Tue Nov 3 08:52:44 2009 by Michael Ley (ley@uni-trier.de)