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Burkhard Morgenstern Vis

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*2009
46EEFabian Schreiber, Kerstin Pick, Dirk Erpenbeck, Gert Wörheide, Burkhard Morgenstern: OrthoSelect: a protocol for selecting orthologous groups in phylogenomics. BMC Bioinformatics 10: (2009)
45EEDietmar Sommerfeld, Thomas Lingner, Mario Stanke, Burkhard Morgenstern, Harald Richter: AUGUSTUS at MediGRID: Adaption of a bioinformatics application to grid computing for efficient genome analysis. Future Generation Comp. Syst. 25(3): 337-345 (2009)
44EEFabian Schreiber, Gert Wörheide, Burkhard Morgenstern: OrthoSelect: a web server for selecting orthologous gene alignments from EST sequences. Nucleic Acids Research 37(Web-Server-Issue): 185-188 (2009)
43EEAnne-Kathrin Schultz, Ming Zhang, Ingo Bulla, Thomas Leitner, Bette Korber, Burkhard Morgenstern, Mario Stanke: jpHMM: Improving the reliability of recombination prediction in HIV-1. Nucleic Acids Research 37(Web-Server-Issue): 647-651 (2009)
2008
42EEAmarendran R. Subramanian, Michael Kaufmann, Burkhard Morgenstern: DIALIGN-TX: greedy and progressive approaches for segment-based multiple sequence alignment. Algorithms for Molecular Biology 3: (2008)
41EEPeter Meinicke, Thomas Lingner, Alexander Kaever, Kirstin Feussner, Cornelia Göbel, Ivo Feussner, Petr Karlovsky, Burkhard Morgenstern: Metabolite-based clustering and visualization of mass spectrometry data using one-dimensional self-organizing maps. Algorithms for Molecular Biology 3: (2008)
40EEHolger Wagner, Burkhard Morgenstern, Andreas W. M. Dress: Stability of multiple alignments and phylogenetic trees: an analysis of ABC-transporter proteins family. Algorithms for Molecular Biology 3: (2008)
39EEKatharina J. Hoff, Maike Tech, Thomas Lingner, Rolf Daniel, Burkhard Morgenstern, Peter Meinicke: Gene prediction in metagenomic fragments: A large scale machine learning approach. BMC Bioinformatics 9: (2008)
2006
38EEBurkhard Morgenstern, Sonja J. Prohaska, Dirk Pöhler, Peter F. Stadler: Multiple sequence alignment with user-defined anchor points. Algorithms for Molecular Biology 1: (2006)
37EEBurkhard Morgenstern, Peter F. Stadler: New journal: Algorithms for Molecular Biology. Algorithms for Molecular Biology 1: (2006)
36EEMario Stanke, Oliver Schöffmann, Burkhard Morgenstern, Stephan Waack: Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources. BMC Bioinformatics 7: 62 (2006)
35EEMario Stanke, Oliver Keller, Irfan Gunduz, Alec Hayes, Stephan Waack, Burkhard Morgenstern: AUGUSTUS: ab initio prediction of alternative transcripts. Nucleic Acids Research 34(Web-Server-Issue): 435-439 (2006)
34EEMing Zhang, Anne-Kathrin Schultz, Charles Calef, Carla Kuiken, Thomas Leitner, Bette Korber, Burkhard Morgenstern, Mario Stanke: jpHMM at GOBICS: a web server to detect genomic recombinations in HIV-1. Nucleic Acids Research 34(Web-Server-Issue): 463-465 (2006)
33EEMaike Tech, Burkhard Morgenstern, Peter Meinicke: TICO: a tool for postprocessing the predictions of prokaryotic translation initiation sites. Nucleic Acids Research 34(Web-Server-Issue): 588-590 (2006)
2005
32EEAmarendran R. Subramanian, Jan Weyer-Menkhoff, Michael Kaufmann, Burkhard Morgenstern: DIALIGN-T: An improved algorithm for segment-based multiple sequence alignment. BMC Bioinformatics 6: 66 (2005)
31EEMaike Tech, Nico Pfeifer, Burkhard Morgenstern, Peter Meinicke: TICO: a tool for improving predictions of prokaryotic translation initiation sites. Bioinformatics 21(17): 3568-3569 (2005)
30EEBurkhard Morgenstern, Nadine Werner, Sonja J. Prohaska, Rasmus Steinkamp, Isabelle Schneider, Amarendran R. Subramanian, Peter F. Stadler, Jan Weyer-Menkhoff: Multiple sequence alignment with user-defined constraints at GOBICS. Bioinformatics 21(7): 1271-1273 (2005)
29EEMario Stanke, Burkhard Morgenstern: AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints. Nucleic Acids Research 33(Web-Server-Issue): 465-467 (2005)
28EEDirk Pöhler, Nadine Werner, Rasmus Steinkamp, Burkhard Morgenstern: Multiple alignment of genomic sequences using CHAOS, DIALIGN and ABC. Nucleic Acids Research 33(Web-Server-Issue): 532-534 (2005)
2004
27 Burkhard Morgenstern, Sonja J. Prohaska, Nadine Werner, Jan Weyer-Menkhoff, Isabelle Schneider, Amarendran R. Subramanian, Peter F. Stadler: Multiple sequence alignment with user-defined constraints. German Conference on Bioinformatics 2004: 25-36
26EEMartin Schmollinger, Kay Nieselt, Michael Kaufmann, Burkhard Morgenstern: DIALIGN P: Fast pair-wise and multiple sequence alignment using parallel processors. BMC Bioinformatics 5: 128 (2004)
25EEPeter Meinicke, Maike Tech, Burkhard Morgenstern, Rainer Merkl: Oligo kernels for datamining on biological sequences: a case study on prokaryotic translation initiation sites. BMC Bioinformatics 5: 169 (2004)
24 Leila Taher, Oliver Rinner, Saurabh Garg, Alexander Sczyrba, Burkhard Morgenstern: AGenDA: gene prediction by cross-species sequence comparison. Nucleic Acids Research 32(Web-Server-Issue): 305-308 (2004)
23 Mario Stanke, Rasmus Steinkamp, Stephan Waack, Burkhard Morgenstern: AUGUSTUS: a web server for gene finding in eukaryotes. Nucleic Acids Research 32(Web-Server-Issue): 309-312 (2004)
22 Burkhard Morgenstern: DIALIGN: multiple DNA and protein sequence alignment at BiBiServ. Nucleic Acids Research 32(Web-Server-Issue): 33-36 (2004)
21 Michael Brudno, Rasmus Steinkamp, Burkhard Morgenstern: The CHAOS/DIALIGN WWW server for multiple alignment of genomic sequences. Nucleic Acids Research 32(Web-Server-Issue): 41-44 (2004)
2003
20 Michael Sammeth, Burkhard Morgenstern, Jens Stoye: Divide-and-conquer multiple alignment with segment-based constraints. ECCB 2003: 189-195
19EEMichael Brudno, Michael Chapman, Berthold Göttgens, Serafim Batzoglou, Burkhard Morgenstern: Fast and sensitive multiple alignment of large genomic sequences. BMC Bioinformatics 4: 66 (2003)
18 Leila Taher, Oliver Rinner, Saurabh Garg, Alexander Sczyrba, Michael Brudno, Serafim Batzoglou, Burkhard Morgenstern: AGenDA: homology-based gene prediction. Bioinformatics 19(12): 1575-1577 (2003)
17 Burkhard Morgenstern, Sachin Goel, Alexander Sczyrba, Andreas W. M. Dress: AltAVisT: Comparing alternative multiple sequence alignments. Bioinformatics 19(3): 425-426 (2003)
2002
16EEMichael Brudno, Burkhard Morgenstern: Fast and Sensitive Alignment of Large Genomic Sequences. CSB 2002: 138-
15EEBurkhard Morgenstern: A simple and space-efficient fragment-chaining algorithm for alignment of DNA and protein sequences. Appl. Math. Lett. 15(1): 11-16 (2002)
14 Burkhard Morgenstern, Oliver Rinner, Saïd Abdeddaïm, Dirk Haase, Klaus F. X. Mayer, Andreas W. M. Dress, Hans-Werner Mewes: Exon discovery by genomic sequence alignment. Bioinformatics 18(6): 777-787 (2002)
13EEOliver Rinner, Burkhard Morgenstern: AGenDA: Gene prediction by comparative sequence analysis. In Silico Biology 2: 18 (2002)
12 Hans-Werner Mewes, Dmitrij Frishman, Ulrich Güldener, Gertrud Mannhaupt, Klaus F. X. Mayer, Martin Mokrejs, Burkhard Morgenstern, Martin Münsterkötter, Stephen Rudd, B. Weil: MIPS: a database for genomes and protein sequences. Nucleic Acids Research 30(1): 31-34 (2002)
2001
11 Oliver Rinner, Burkhard Morgenstern: Gene prediction by comparative sequence analysis. German Conference on Bioinformatics 2001: 131-134
10 Birgitta Geier, Gabi Kastenmüller, Matthias Fellenberg, Hans-Werner Mewes, Burkhard Morgenstern: The HIB database of annotated UniGene clusters. Bioinformatics 17(6): 571-572 (2001)
2000
9EESaïd Abdeddaïm, Burkhard Morgenstern: Speeding Up the DIALIGN Multiple Alignment Program by Using the `Greedy Alignment of BIOlogical Sequences LIBrary' (GABIOS-LIB). JOBIM 2000: 1-11
8 Burkhard Morgenstern: A space-efficient algorithm for aligning large genomic sequences. Bioinformatics 16(10): 948-949 (2000)
1999
7 Hans-Peter Lenhof, Burkhard Morgenstern, Knut Reinert: An exact solution for the segment-to-segment multiple sequence alignment problem. Bioinformatics 15(3): 203-210 (1999)
6 Burkhard Morgenstern: DIALIGN 2: improvement of the segment-to-segment approach to multiple sequence alignment. Bioinformatics 15(3): 211-218 (1999)
1998
5 Knut Reinert, Hans-Peter Lenhof, Burkhard Morgenstern: An exact solution for the Segment-to-Segment multiple sequence alignment problem. German Conference on Bioinformatics 1998
4 Burkhard Morgenstern: DIALIGN2: Improvement of the segment to segment approach to multiple sequence alignment. German Conference on Bioinformatics 1998
3 Burkhard Morgenstern, William R. Atchley, Klaus Hahn, Andreas W. M. Dress: Segment-Based Scores for Pairwise and Multiple Sequence Alignments. ISMB 1998: 115-121
2 Burkhard Morgenstern, Kornelie Frech, Andreas W. M. Dress, Thomas Werner: DIALIGN: finding local similarities by multiple sequence alignment. Bioinformatics 14(3): 290-294 (1998)
1997
1 Burkhard Morgenstern, Thomas Werner: Dialign 1.0: Multiple alignment by Segment rather than by Position comparison. German Conference on Bioinformatics 1997: 69-71

Coauthor Index

1Saïd Abdeddaïm [9] [14]
2William R. Atchley [3]
3Serafim Batzoglou [18] [19]
4Michael Brudno [16] [18] [19] [21]
5Ingo Bulla [43]
6Charles Calef [34]
7Michael Chapman [19]
8Rolf Daniel [39]
9Andreas W. M. Dress [2] [3] [14] [17] [40]
10Dirk Erpenbeck [46]
11Matthias Fellenberg [10]
12Ivo Feussner [41]
13Kirstin Feussner [41]
14Kornelie Frech [2]
15Dmitrij Frishman [12]
16Saurabh Garg [18] [24]
17Birgitta Geier [10]
18Cornelia Göbel [41]
19Sachin Goel [17]
20Berthold Göttgens [19]
21Ulrich Güldener [12]
22Irfan Gunduz [35]
23Dirk Haase [14]
24Klaus Hahn [3]
25Alec Hayes [35]
26Katharina J. Hoff [39]
27Alexander Kaever [41]
28Petr Karlovsky [41]
29Gabi Kastenmüller [10]
30Michael Kaufmann [26] [32] [42]
31Oliver Keller [35]
32Bette Korber [34] [43]
33Carla Kuiken [34]
34Thomas Leitner [34] [43]
35Hans-Peter Lenhof [5] [7]
36Thomas Lingner [39] [41] [45]
37Gertrud Mannhaupt [12]
38Klaus F. X. Mayer [12] [14]
39Peter Meinicke [25] [31] [33] [39] [41]
40Rainer Merkl [25]
41Hans-Werner Mewes [10] [12] [14]
42Martin Mokrejs [12]
43Martin Münsterkötter [12]
44Kay Nieselt [26]
45Nico Pfeifer [31]
46Kerstin Pick [46]
47Dirk Pöhler [28] [38]
48Sonja J. Prohaska [27] [30] [38]
49Knut Reinert [5] [7]
50Harald Richter [45]
51Oliver Rinner [11] [13] [14] [18] [24]
52Stephen Rudd [12]
53Michael Sammeth [20]
54Martin Schmollinger [26]
55Isabelle Schneider [27] [30]
56Oliver Schöffmann [36]
57Fabian Schreiber [44] [46]
58Anne-Kathrin Schultz [34] [43]
59Alexander Sczyrba [17] [18] [24]
60Dietmar Sommerfeld [45]
61Peter F. Stadler [27] [30] [37] [38]
62Mario Stanke [23] [29] [34] [35] [36] [43] [45]
63Rasmus Steinkamp [21] [23] [28] [30]
64Jens Stoye [20]
65Amarendran R. Subramanian [27] [30] [32] [42]
66Leila Taher [18] [24]
67Maike Tech [25] [31] [33] [39]
68Stephan Waack [23] [35] [36]
69Holger Wagner [40]
70B. Weil [12]
71Nadine Werner [27] [28] [30]
72Thomas Werner [1] [2]
73Jan Weyer-Menkhoff [27] [30] [32]
74Gert Wörheide [44] [46]
75Ming Zhang [34] [43]

Colors in the list of coauthors

Copyright © Tue Nov 3 08:52:44 2009 by Michael Ley (ley@uni-trier.de)