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Bernard M. E. Moret Vis

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*2009
78EENicholas D. Pattengale, Masoud Alipour, Olaf R. P. Bininda-Emonds, Bernard M. E. Moret, Alexandros Stamatakis: How Many Bootstrap Replicates Are Necessary?. RECOMB 2009: 184-200
77EEKrister M. Swenson, Vaibhav Rajan, Yu Lin, Bernard M. E. Moret: Sorting Signed Permutations by Inversions in O(nlogn) Time. RECOMB 2009: 386-399
76EEXiuwei Zhang, Bernard M. E. Moret: Improving Inference of Transcriptional Regulatory Networks Based on Network Evolutionary Models. WABI 2009: 415-428
75EEKrister M. Swenson, Bernard M. E. Moret: Inversion-based genomic signatures. BMC Bioinformatics 10(S-1): (2009)
74EEKrister M. Swenson, Yokuki To, Jijun Tang, Bernard M. E. Moret: Maximum independent sets of commuting and noninterfering inversions. BMC Bioinformatics 10(S-1): (2009)
2008
73EEKrister M. Swenson, William Arndt, Jijun Tang, Bernard M. E. Moret: Phylogenetic Reconstruction from Complete Gene Orders of Whole Genomes. APBC 2008: 241-250
72EEXiuwei Zhang, Maryam Zaheri, Bernard M. E. Moret: Using Phylogenetic Relationships to Improve the Inference of Transcriptional Regulatory Networks. BMEI (1) 2008: 186-193
71EEYu Lin, Bernard M. E. Moret: Estimating true evolutionary distances under the DCJ model. ISMB 2008: 114-122
70EEMichael Brudno, Bernard M. E. Moret, C. Randal Linder, Tandy Warnow: Session Introduction. Pacific Symposium on Biocomputing 2008: 1-2
69EEKrister M. Swenson, Yu Lin, Vaibhav Rajan, Bernard M. E. Moret: Hurdles Hardly Have to Be Heeded. RECOMB-CG 2008: 241-251
68EEXiuwei Zhang, Bernard M. E. Moret: Boosting the Performance of Inference Algorithms for Transcriptional Regulatory Networks Using a Phylogenetic Approach. WABI 2008: 245-258
67EEKrister M. Swenson, Mark Marron, Joel V. Earnest-DeYoung, Bernard M. E. Moret: Approximating the true evolutionary distance between two genomes. ACM Journal of Experimental Algorithmics 12: (2008)
2007
66EEMoulik Kothari, Bernard M. E. Moret: An Experimental Evaluation of Inversion-and Transposition-Based Genomic Distances through Simulations. CIBCB 2007: 151-158
65EENicholas D. Pattengale, Eric J. Gottlieb, Bernard M. E. Moret: Efficiently Computing the Robinson-Foulds Metric. Journal of Computational Biology 14(6): 724-735 (2007)
2006
64 Philipp Bucher, Bernard M. E. Moret: Algorithms in Bioinformatics, 6th International Workshop, WABI 2006, Zurich, Switzerland, September 11-13, 2006, Proceedings Springer 2006
63 Liying Cui, Feng Yue, Claude W. dePamphilis, Bernard M. E. Moret, Jijun Tang: Inferring Ancestral Chloroplast Genomes with Inverted Repea. BIOCOMP 2006: 75-81
62EENicholas D. Pattengale, Bernard M. E. Moret: A Sublinear-Time Randomized Approximation Scheme for the Robinson-Foulds Metric. RECOMB 2006: 221-230
61EEM. M. Morin, Bernard M. E. Moret: NetGen: generating phylogenetic networks with diploid hybrids. Bioinformatics 22(15): 1921-1923 (2006)
2005
60EEKrister M. Swenson, Mark Marron, Joel V. Earnest-DeYoung, Bernard M. E. Moret: Approximating the True Evolutionary Distance between Two Genomes. ALENEX/ANALCO 2005: 121-129
59EEBernard M. E. Moret: Computational Challenges from the Tree of Life. ALENEX/ANALCO 2005: 3-16
58EETao Liu, Jijun Tang, Bernard M. E. Moret: Quartet-Based Phylogeny Reconstruction from Gene Orders. COCOON 2005: 63-73
57EEJijun Tang, Bernard M. E. Moret: Linear Programming for Phylogenetic Reconstruction Based on Gene Rearrangements. CPM 2005: 406-416
56EENicholas D. Pattengale, Bernard M. E. Moret: Phylogenetic Postprocessing. CSB Workshops 2005: 57-58
55EEKrister M. Swenson, Nicholas D. Pattengale, Bernard M. E. Moret: A Framework for Orthology Assignment from Gene Rearrangement Data. Comparative Genomics 2005: 153-166
2004
54EEJijun Tang, Bernard M. E. Moret, Liying Cui, Claude W. dePamphilis: Phylogenetic Reconstruction from Arbitrary Gene-Order Data. BIBE 2004: 592-599
53EEUsman Roshan, Bernard M. E. Moret, Tandy Warnow, Tiffani L. Williams: Rec-I-DCM3: A Fast Algorithmic Technique for Reconstructing Large Phylogenetic Trees. CSB 2004: 98-109
52EEJoel V. Earnest-DeYoung, Emmanuelle Lerat, Bernard M. E. Moret: Reversing Gene Erosion - Reconstructing Ancestral Bacterial Genomes from Gene-Content and Order Data. WABI 2004: 1-13
51EEBernard M. E. Moret, Luay Nakhleh, Tandy Warnow, C. Randal Linder, Anna Tholse, Anneke Padolina, Jerry Sun, Ruth E. Timme: Phylogenetic Networks: Modeling, Reconstructibility, and Accuracy. IEEE/ACM Trans. Comput. Biology Bioinform. 1(1): 13-23 (2004)
50EEMark Marron, Krister M. Swenson, Bernard M. E. Moret: Genomic Distances under Deletions and Insertions. Theor. Comput. Sci. 325(3): 347-360 (2004)
2003
49EETiffani L. Williams, Bernard M. E. Moret: An Investigation of Phylogenetic Likelihood Methods. BIBE 2003: 79-86
48EEMark Marron, Krister M. Swenson, Bernard M. E. Moret: Genomic Distances under Deletions and Insertions. COCOON 2003: 537-547
47EEJijun Tang, Bernard M. E. Moret: Scaling up accurate phylogenetic reconstruction from gene-order data. ISMB (Supplement of Bioinformatics) 2003: 305-312
46EELuay Nakhleh, Jerry Sun, Tandy Warnow, C. Randal Linder, Bernard M. E. Moret, Anna Tholse: Towards the Development of Computational Tools for Evaluating Phylogenetic Network Reconstruction Methods. Pacific Symposium on Biocomputing 2003: 315-326
45EEJijun Tang, Bernard M. E. Moret: Phylogenetic Reconstruction from Gene-Rearrangement Data with Unequal Gene Content. WADS 2003: 37-46
44EEKatherine St. John, Tandy Warnow, Bernard M. E. Moret, Lisa Vawter: Performance study of phylogenetic methods: (unweighted) quartet methods and neighbor-joining. J. Algorithms 48(1): 173-193 (2003)
2002
43 Rudolf Fleischer, Bernard M. E. Moret, Erik Meineche Schmidt: Experimental Algorithmics, From Algorithm Design to Robust and Efficient Software [Dagstuhl seminar, September 2000] Springer 2002
42EELuay Nakhleh, Bernard M. E. Moret, Usman Roshan, Katherine St. John, Jerry Sun, Tandy Warnow: The Accuracy of Fast Phylogenetic Methods for Large Datasets. Pacific Symposium on Biocomputing 2002: 211-222
41EELi-San Wang, Robert K. Jansen, Bernard M. E. Moret, Linda A. Raubeson, Tandy Warnow: Fast Phylogenetic Methods for the Analysis of Genome Rearrangement Data: An Empirical Study. Pacific Symposium on Biocomputing 2002: 524-535
40EEBernard M. E. Moret, Usman Roshan, Tandy Warnow: Sequence-Length Requirements for Phylogenetic Methods. WABI 2002: 343-356
39EEBernard M. E. Moret, Adam C. Siepel, Jijun Tang, Tao Liu: Inversion Medians Outperform Breakpoint Medians in Phylogeny Reconstruction from Gene-Order Data. WABI 2002: 521-536
38EEBernard M. E. Moret, Li-San Wang, Tandy Warnow: Toward New Software for Computational Phylogenetics. IEEE Computer 35(7): 55-64 (2002)
37 Srinivas Doddi, Madhav V. Marathe, Bernard M. E. Moret: Point Set Labeling with Specified Positions. Int. J. Comput. Geometry Appl. 12(1-2): 29-66 (2002)
36EEBernard M. E. Moret, Jijun Tang, Li-San Wang, Tandy Warnow: Steps toward accurate reconstructions of phylogenies from gene-order data. J. Comput. Syst. Sci. 65(3): 508-525 (2002)
35 Bernard M. E. Moret, David A. Bader, Tandy Warnow: High-Performance Algorithm Engineering for Computational Phylogenetics. The Journal of Supercomputing 22(1): 99-111 (2002)
2001
34 Olivier Gascuel, Bernard M. E. Moret: Algorithms in Bioinformatics, First International Workshop, WABI 2001, Aarhus, Denmark, August 28-31, 2001, Proceedings Springer 2001
33EEDavid A. Bader, Ajith K. Illendula, Bernard M. E. Moret, Nina R. Weisse-Bernstein: Using PRAM Algorithms on a Uniform-Memory-Access Shared-Memory Architecture. Algorithm Engineering 2001: 129-144
32 Bernard M. E. Moret, Li-San Wang, Tandy Warnow, Stacia K. Wyman: New approaches for reconstructing phylogenies from gene order data. ISMB (Supplement of Bioinformatics) 2001: 165-173
31EEBernard M. E. Moret, David A. Bader, Tandy Warnow: High-Performance Algorithm Engineering for Computational Phylogenetics. International Conference on Computational Science (2) 2001: 1012-1021
30EEBernard M. E. Moret, Stacia K. Wyman, David A. Bader, Tandy Warnow, Mi Yan: A New Implmentation and Detailed Study of Breakpoint Analysis. Pacific Symposium on Biocomputing 2001: 583-594
29EETandy Warnow, Bernard M. E. Moret, Katherine St. John: Absolute convergence: true trees from short sequences. SODA 2001: 186-195
28EEKatherine St. John, Tandy Warnow, Bernard M. E. Moret, Lisa Vawter: Performance study of phylogenetic methods: (unweighted) quartet methods and neighbor-joining. SODA 2001: 196-205
27EEAdam C. Siepel, Bernard M. E. Moret: Finding an Optimal Inversion Median: Experimental Results. WABI 2001: 189-203
26EEDavid A. Bader, Bernard M. E. Moret, Mi Yan: A Linear-Time Algorithm for Computing Inversion Distance between Signed Permutations with an Experimental Study. WADS 2001: 365-376
25 Bernard M. E. Moret: Foreword. J. Algorithms 38(1): 1 (2001)
24EEBernard M. E. Moret, Henry D. Shapiro: Algorithms and Experiments: The New (and Old) Methodology. J. UCS 7(5): 434-446 (2001)
23 David A. Bader, Bernard M. E. Moret, Mi Yan: A Linear-Time Algorithm for Computing Inversion Distance between Signed Permutations with an Experimental Study. Journal of Computational Biology 8(5): 483-491 (2001)
2000
22EEDavid A. Bader, Bernard M. E. Moret, Peter Sanders: Algorithm Engineering for Parallel Computation. Experimental Algorithmics 2000: 1-23
21EEBernard M. E. Moret, Tandy Warnow: Reconstructing Optimal Phylogenetic Trees: A Challenge in Experimental Algorithmics. Experimental Algorithmics 2000: 163-180
20 Mary E. Cosner, Robert K. Jansen, Bernard M. E. Moret, Linda A. Raubeson, Li-San Wang, Tandy Warnow, Stacia K. Wyman: A New Fast Heuristic for Computing the Breakpoint Phylogeny and Experimental Phylogenetic Analyses of Real and Synthetic Data. ISMB 2000: 104-115
19EESrinivas Doddi, Madhav V. Marathe, Bernard M. E. Moret: Point set labeling with specified positions. Symposium on Computational Geometry 2000: 182-190
1999
18EEAndrew V. Goldberg, Bernard M. E. Moret: Combinatorial Algorithms Test Sets [CATS]: The ACM/EATCS Platform for Experimental Research. SODA 1999: 913-914
17EEGregory L. Heileman, Chaouki T. Abdallah, Bernard M. E. Moret, Bradley J. Smith: Dynamical System Representation of Open Address Hash Functions. SODA 1999: 919-920
1998
16EEMichael J. Collins, Bernard M. E. Moret: Improved Lower Bounds for the Link Length of Rectilinear Spanning Paths in Grids. Inf. Process. Lett. 68(6): 317-319 (1998)
1997
15 Srinivas Doddi, Madhav V. Marathe, Andy Mirzaian, Bernard M. E. Moret, Binhai Zhu: Map Labeling and Its Generalizations. SODA 1997: 148-157
1995
14EEAli A. Kooshesh, Bernard M. E. Moret: Folding a Simple Polygon: A Paradigm for Computational Geometry. ACM Conference on Computer Science 1995: 114-118
13EEZhiqiang Chen, Andrew T. Holle, Bernard M. E. Moret, Jared Saia, Ali Boroujerdi: Network Routing Models Applied to Aircraft Routing Problems. Winter Simulation Conference 1995: 1200-1206
1993
12 Paul Helman, Bernard M. E. Moret, Henry D. Shapiro: An Exact Characterization of Greedy Structures. SIAM J. Discrete Math. 6(2): 274-283 (1993)
1992
11 Paul Helman, Bernard M. E. Moret, Henry D. Shapiro: An Exact Characterization of Greedy Structures. IPCO 1992: 287-297
10EEAli A. Kooshesh, Bernard M. E. Moret: Three-coloring the vertices of a triangulated simple polygon. Pattern Recognition 25(4): 443- (1992)
1991
9EEAli A. Kooshesh, Bernard M. E. Moret: Folding a Triangulated Simple Polygon: Structural and Algorithmic Results. ICCI 1991: 102-110
8 Bernard M. E. Moret, Henry D. Shapiro: How to Find a Minimum Spanning Tree in Practice. New Results and New Trends in Computer Science 1991: 192-203
7 Bernard M. E. Moret, Henry D. Shapiro: An Emperical Analysis of Algorithms for Constructing a Minimum Spanning Tree. WADS 1991: 400-411
6EEKarl R. Abrahamson, Michael R. Fellows, Michael A. Langston, Bernard M. E. Moret: Constructive complexity. Discrete Applied Mathematics 34(1-3): 3-16 (1991)
1990
5EEChea-Tin (Tim) Tseng, Bernard M. E. Moret: A new method for one-dimensional linear feature transformations. Pattern Recognition 23(7): 745-752 (1990)
1983
4 Michael J. Mathey, Bernard M. E. Moret: The Computational Metaphor and Quantum Physics. Commun. ACM 26(2): 137-145 (1983)
3 Bernard M. E. Moret, Michael G. Thomason, Rafael C. Gonzalez: Symmetric and Threshold Boolean Functions Are Exhaustive. IEEE Trans. Computers 32(12): 1211-1212 (1983)
1982
2 Bernard M. E. Moret: Decision Trees and Diagrams. ACM Comput. Surv. 14(4): 593-623 (1982)
1980
1EEBernard M. E. Moret, Michael G. Thomason, Rafael C. Gonzalez: The Activity of a Variable and Its Relation to Decision Trees. ACM Trans. Program. Lang. Syst. 2(4): 580-595 (1980)

Coauthor Index

1Chaouki T. Abdallah [17]
2Karl R. Abrahamson [6]
3Masoud Alipour [78]
4William Arndt [73]
5David A. Bader [22] [23] [26] [30] [31] [33] [35]
6Olaf R. P. Bininda-Emonds [78]
7Ali Boroujerdi [13]
8Michael Brudno [70]
9Philipp Bucher [64]
10Zhiqiang Chen [13]
11Michael J. Collins [16]
12Mary E. Cosner [20]
13Liying Cui [54] [63]
14Srinivas Doddi [15] [19] [37]
15Joel V. Earnest-DeYoung [52] [60] [67]
16Michael R. Fellows (Mike Fellows) [6]
17Rudolf Fleischer [43]
18Olivier Gascuel [34]
19Andrew V. Goldberg [18]
20Rafael C. Gonzalez [1] [3]
21Eric J. Gottlieb [65]
22Gregory L. Heileman [17]
23Paul Helman [11] [12]
24Andrew T. Holle [13]
25Ajith K. Illendula [33]
26Robert K. Jansen [20] [41]
27Katherine St. John [28] [29] [42] [44]
28Ali A. Kooshesh [9] [10] [14]
29Moulik Kothari [66]
30Michael A. Langston [6]
31Emmanuelle Lerat [52]
32Yu Lin [69] [71] [77]
33C. Randal Linder [46] [51] [70]
34Tao Liu [39] [58]
35Madhav V. Marathe [15] [19] [37]
36Mark Marron [48] [50] [60] [67]
37Michael J. Mathey [4]
38Andranik Mirzaian (Andy Mirzaian) [15]
39M. M. Morin [61]
40Luay Nakhleh [42] [46] [51]
41Anneke Padolina [51]
42Nicholas D. Pattengale [55] [56] [62] [65] [78]
43Vaibhav Rajan [69] [77]
44Linda A. Raubeson [20] [41]
45Usman Roshan [40] [42] [53]
46Jared Saia [13]
47Peter Sanders [22]
48Erik Meineche Schmidt [43]
49Henry D. Shapiro [7] [8] [11] [12] [24]
50Adam C. Siepel [27] [39]
51Bradley J. Smith [17]
52Alexandros Stamatakis [78]
53Jerry Sun [42] [46] [51]
54Krister M. Swenson [48] [50] [55] [60] [67] [69] [73] [74] [75] [77]
55Jijun Tang [36] [39] [45] [47] [54] [57] [58] [63] [73] [74]
56Anna Tholse [46] [51]
57Michael G. Thomason [1] [3]
58Ruth E. Timme [51]
59Yokuki To [74]
60Chea-Tin (Tim) Tseng [5]
61Lisa Vawter [28] [44]
62Li-San Wang [20] [32] [36] [38] [41]
63Tandy Warnow [20] [21] [28] [29] [30] [31] [32] [35] [36] [38] [40] [41] [42] [44] [46] [51] [53] [70]
64Nina R. Weisse-Bernstein [33]
65Tiffani L. Williams [49] [53]
66Stacia K. Wyman [20] [30] [32]
67Mi Yan [23] [26] [30]
68Feng Yue [63]
69Maryam Zaheri [72]
70Xiuwei Zhang [68] [72] [76]
71Binhai Zhu [15]
72Claude W. dePamphilis [54] [63]

Colors in the list of coauthors

Copyright © Tue Nov 3 08:52:44 2009 by Michael Ley (ley@uni-trier.de)