| * | 2009 |
| 17 | EE | Oriol Fornes,
Ramon Aragues,
Jordi Espadaler,
Marc A. Martí-Renom,
Andrej Sali,
Baldo Oliva:
ModLink+: improving fold recognition by using protein-protein interactions.
Bioinformatics 25(12): 1506-1512 (2009) |
| 16 | EE | Ursula Pieper,
Narayanan Eswar,
Ben M. Webb,
David Eramian,
Libusha Kelly,
David T. Barkan,
Hannah Carter,
Parminder Mankoo,
Rachel Karchin,
Marc A. Martí-Renom,
Fred P. Davis,
Andrej Sali:
MODBASE, a database of annotated comparative protein structure models and associated resources.
Nucleic Acids Research 37(Database-Issue): 347-354 (2009) |
| 15 | EE | Emidio Capriotti,
Marc A. Martí-Renom:
SARA: a server for function annotation of RNA structures.
Nucleic Acids Research 37(Web-Server-Issue): 260-265 (2009) |
| 2008 |
| 14 | EE | Emidio Capriotti,
Marc A. Martí-Renom:
RNA structure alignment by a unit-vector approach.
ECCB 2008: 112-118 |
| 13 | EE | Jordi Espadaler,
Narayanan Eswar,
Enrique Querol,
Francesc X. Avilés,
Andrej Sali,
Marc A. Martí-Renom,
Baldomero Oliva:
Prediction of enzyme function by combining sequence similarity and protein interactions.
BMC Bioinformatics 9: (2008) |
| 2007 |
| 12 | EE | Marc A. Martí-Renom,
Andrea Rossi,
Fátima Al-Shahrour,
Fred P. Davis,
Ursula Pieper,
Joaquín Dopazo,
Andrej Sali:
The AnnoLite and AnnoLyze programs for comparative annotation of protein structures.
BMC Bioinformatics 8(S-4): (2007) |
| 11 | EE | Marc A. Martí-Renom,
Ursula Pieper,
Mallur S. Madhusudhan,
Andrea Rossi,
Narayanan Eswar,
Fred P. Davis,
Fátima Al-Shahrour,
Joaquín Dopazo,
Andrej Sali:
DBAli tools: mining the protein structure space.
Nucleic Acids Research 35(Web-Server-Issue): 393-397 (2007) |
| 2006 |
| 10 | EE | Ursula Pieper,
Narayanan Eswar,
Fred P. Davis,
Hannes Braberg,
Mallur S. Madhusudhan,
Andrea Rossi,
Marc A. Martí-Renom,
Rachel Karchin,
Ben M. Webb,
David Eramian,
Min-Yi Shen,
Libusha Kelly,
Francisco Melo,
Andrej Sali:
MODBASE: a database of annotated comparative protein structure models and associated resources.
Nucleic Acids Research 34(Database-Issue): 291-295 (2006) |
| 2004 |
| 9 | | Ursula Pieper,
Narayanan Eswar,
Hannes Braberg,
Mallur S. Madhusudhan,
Fred P. Davis,
Ashley C. Stuart,
Nebojsa Mirkovic,
Andrea Rossi,
Marc A. Martí-Renom,
András Fiser,
Ben M. Webb,
Daniel M. Greenblatt,
Conrad C. Huang,
Thomas E. Ferrin,
Andrej Sali:
MODBASE, a database of annotated comparative protein structure models, and associated resources.
Nucleic Acids Research 32(Database-Issue): 217-222 (2004) |
| 2003 |
| 8 | | Valentin A. Ilyin,
Ursula Pieper,
Ashley C. Stuart,
Marc A. Martí-Renom,
Linda McMahan,
Andrej Sali:
ModView, visualization of multiple protein sequences and structures.
Bioinformatics 19(1): 165-166 (2003) |
| 7 | | Ingrid Y. Y. Koh,
Volker A. Eyrich,
Marc A. Martí-Renom,
Dariusz Przybylski,
Mallur S. Madhusudhan,
Narayanan Eswar,
Osvaldo Graña,
Florencio Pazos,
Alfonso Valencia,
Andrej Sali,
Burkhard Rost:
EVA: evaluation of protein structure prediction servers.
Nucleic Acids Research 31(13): 3311-3315 (2003) |
| 6 | | Narayanan Eswar,
Bino John,
Nebojsa Mirkovic,
András Fiser,
Valentin A. Ilyin,
Ursula Pieper,
Ashley C. Stuart,
Marc A. Martí-Renom,
Mallur S. Madhusudhan,
Bozidar Yerkovich,
Andrej Sali:
Tools for comparative protein structure modeling and analysis.
Nucleic Acids Research 31(13): 3375-3380 (2003) |
| 2001 |
| 5 | | Volker A. Eyrich,
Marc A. Martí-Renom,
Dariusz Przybylski,
Mallur S. Madhusudhan,
András Fiser,
Florencio Pazos,
Alfonso Valencia,
Andrej Sali,
Burkhard Rost:
EVA: continuous automatic evaluation of protein structure prediction servers.
Bioinformatics 17(12): 1242-1243 (2001) |
| 4 | | Marc A. Martí-Renom,
Valentin A. Ilyin,
Andrej Sali:
DBAli: a database of protein structure alignments.
Bioinformatics 17(8): 746-747 (2001) |
| 3 | EE | José M. Mas,
Patrick Aloy,
Marc A. Martí-Renom,
Baldomero Oliva,
R. de Llorens,
Francesc X. Avilés,
Enrique Querol:
Classification of protein disulphide-bridge topologies.
Journal of Computer-Aided Molecular Design 15(5): 477-487 (2001) |
| 2000 |
| 2 | | Xavier Serra-Hartmann,
Xavier Rebordosa,
Jaume Piñol,
Enrique Querol,
Marc A. Martí-Renom:
ASAP: analysis of peptide composition.
Bioinformatics 16(12): 1153-1154 (2000) |
| 1 | EE | Patrick Aloy,
José M. Mas,
Marc A. Martí-Renom,
Enrique Querol,
Francesc X. Avilés,
Baldomero Oliva:
Refinement of modelled structures by knowledge-based energy profiles and secondary structure prediction: Application to the human procarboxypeptidase A2.
Journal of Computer-Aided Molecular Design 14(1): 83-92 (2000) |