Kathleen Marchal Vis

*	2009
24		Pushpike Jayantha Thilakarathne, Geert Verbeke, Kristof Engelen, Kathleen Marchal: The Use of Mixed Models to Identify Differentially Expressed Genes when a Single Replicate per Biological Condition is Present. BIOCOMP 2009: 186-190
23	EE	Hong Sun, Tijl De Bie, Valerie Storms, Qiang Fu, Thomas Dhollander, Karen Lemmens, Annemieke Verstuyf, Bart De Moor, Kathleen Marchal: ModuleDigger: an itemset mining framework for the detection of cis-regulatory modules. BMC Bioinformatics 10(S-1): (2009)
22	EE	Hong Sun, Karen Lemmens, Tim Van den Bulcke, Kristof Engelen, Bart De Moor, Kathleen Marchal: ViTraM: visualization of transcriptional modules. Bioinformatics 25(18): 2450-2451 (2009)
21	EE	Anagha Joshi, Riet De Smet, Kathleen Marchal, Yves Van de Peer, Tom Michoel: Module networks revisited: computational assessment and prioritization of model predictions. Bioinformatics 25(4): 490-496 (2009)
	2008
20	EE	Koenraad Van Leemput, Tim Van den Bulcke, Thomas Dhollander, Bart De Moor, Kathleen Marchal, Piet van Remortel: Exploring the Operational Characteristics of Inference Algorithms for Transcriptional Networks by Means of Synthetic Data. Artificial Life 14(1): 49-63 (2008)
19	EE	Ana C. Fierro, Raphael Thuret, Kristof Engelen, Gilles Bernot, Kathleen Marchal, Nicolas Pollet: Evaluation of time profile reconstruction from complex two-color microarray designs. BMC Bioinformatics 9: (2008)
	2007
18	EE	Katrijn Van Deun, Kathleen Marchal, Willem J. Heiser, Kristof Engelen, Iven Van Mechelen: Joint mapping of genes and conditions via multidimensional unfolding analysis. BMC Bioinformatics 8: (2007)
17	EE	Tom Michoel, Steven Maere, Eric Bonnet, Anagha Joshi, Yvan Saeys, Tim Van den Bulcke, Koenraad Van Leemput, Piet van Remortel, Martin Kuiper, Kathleen Marchal, Yves Van de Peer: Validating module network learning algorithms using simulated data. BMC Bioinformatics 8(S-2): (2007)
16	EE	Hui Zhao, Kristof Engelen, Bart De Moor, Kathleen Marchal: CALIB: a Bioconductor package for estimating absolute expression levels from two-color microarray data. Bioinformatics 23(13): 1700-1701 (2007)
15	EE	Thomas Dhollander, Qizheng Sheng, Karen Lemmens, Bart De Moor, Kathleen Marchal, Yves Moreau: Query-driven module discovery in microarray data. Bioinformatics 23(19): 2573-2580 (2007)
	2006
14	EE	Pieter Monsieurs, Gert Thijs, Abeer A. Fadda, Sigrid C. J. De Keersmaecker, Jozef Vanderleyden, Bart De Moor, Kathleen Marchal: More robust detection of motifs in coexpressed genes by using phylogenetic information. BMC Bioinformatics 7: 160 (2006)
13	EE	Tim Van den Bulcke, Koen Van Leemput, Bart Naudts, Piet van Remortel, Hongwu Ma, Alain Verschoren, Bart De Moor, Kathleen Marchal: SynTReN: a generator of synthetic gene expression data for design and analysis of structure learning algorithms. BMC Bioinformatics 7: 43 (2006)
12	EE	Kristof Engelen, Bart Naudts, Bart De Moor, Kathleen Marchal: A calibration method for estimating absolute expression levels from microarray data. Bioinformatics 22(10): 1251-1258 (2006)
	2005
11	EE	Nathalie Pochet, Frizo A. L. Janssens, Frank De Smet, Kathleen Marchal, Ignace Vergote, Johan A. K. Suykens, Bart De Moor: M@CBETH: Optimizing Clinical Microarray Classification. CSB Workshops 2005: 89-90
10	EE	Tijl De Bie, Patrick Monsieurs, Kristof Engelen, Bart De Moor, Nello Cristianini, Kathleen Marchal: Discovering Transcriptional Modules from Motif, Chip-Chip and Microarray Data. Pacific Symposium on Biocomputing 2005
9	EE	Nathalie Pochet, Frizo A. L. Janssens, Frank De Smet, Kathleen Marchal, Johan A. K. Suykens, Bart De Moor: M@CBETH: a microarray classification benchmarking tool. Bioinformatics 21(14): 3185-3186 (2005)
	2003
8		Kristof Engelen, Bert Coessens, Kathleen Marchal, Bart De Moor: MARAN: Normalizing Micro-array Data. Bioinformatics 19(7): 893-894 (2003)
7		Bert Coessens, Gert Thijs, Stein Aerts, Kathleen Marchal, Frank De Smet, Kristof Engelen, Patrick Glenisson, Yves Moreau, Janick Mathys, Bart De Moor: INCLUSive: a web portal and service registry for microarray and regulatory sequence analysis. Nucleic Acids Research 31(13): 3468-3470 (2003)
	2002
6		Gert Thijs, Yves Moreau, Frank De Smet, Janick Mathys, Magali Lescot, Stephane Rombauts, Pierre Rouzé, Bart De Moor, Kathleen Marchal: INCLUSive: INtegrated Clustering, Upstream sequence retrieval and motif Sampling. Bioinformatics 18(2): 331-332 (2002)
5		Frank De Smet, Janick Mathys, Kathleen Marchal, Gert Thijs, Bart De Moor, Yves Moreau: Adaptive quality-based clustering of gene expression profiles. Bioinformatics 18(5): 735-746 (2002)
4		Gert Thijs, Kathleen Marchal, Magali Lescot, Stephane Rombauts, Bart De Moor, Pierre Rouzé, Yves Moreau: A Gibbs Sampling Method to Detect Overrepresented Motifs in the Upstream Regions of Coexpressed Genes. Journal of Computational Biology 9(2): 447-464 (2002)
3		Magali Lescot, Patrice Déhais, Gert Thijs, Kathleen Marchal, Yves Moreau, Yves Van de Peer, Pierre Rouzé, Stephane Rombauts: PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. Nucleic Acids Research 30(1): 325-327 (2002)
	2001
2	EE	Gert Thijs, Kathleen Marchal, Magali Lescot, Stephane Rombauts, Bart De Moor, Pierre Rouzé, Yves Moreau: A Gibbs sampling method to detect over-represented motifs in the upstream regions of co-expressed genes. RECOMB 2001: 305-312
1		Gert Thijs, Magali Lescot, Kathleen Marchal, Stephane Rombauts, Bart De Moor, Pierre Rouzé, Yves Moreau: A higher-order background model improves the detection of promoter regulatory elements by Gibbs sampling. Bioinformatics 17(12): 1113-1122 (2001)

Coauthor Index

1	Stein Aerts	[7]
2	Gilles Bernot	[19]
3	Tijl De Bie	[10] [23]
4	Eric Bonnet	[17]
5	Tim Van den Bulcke	[13] [17] [20] [22]
6	Bert Coessens	[7] [8]
7	Nello Cristianini	[10]
8	Patrice Déhais	[3]
9	Katrijn Van Deun	[18]
10	Thomas Dhollander	[15] [20] [23]
11	Kristof Engelen	[7] [8] [10] [12] [16] [18] [19] [22] [24]
12	Abeer A. Fadda	[14]
13	Ana C. Fierro	[19]
14	Qiang Fu	[23]
15	Patrick Glenisson	[7]
16	Willem J. Heiser	[18]
17	Frizo A. L. Janssens	[9] [11]
18	Anagha Joshi	[17] [21]
19	Sigrid C. J. De Keersmaecker	[14]
20	Martin Kuiper	[17]
21	Koenraad Van Leemput (Koen Van Leemput)	[13] [17] [20]
22	Karen Lemmens	[15] [22] [23]
23	Magali Lescot	[1] [2] [3] [4] [6]
24	Hongwu Ma	[13]
25	Steven Maere	[17]
26	Janick Mathys	[5] [6] [7]
27	Iven Van Mechelen	[18]
28	Tom Michoel	[17] [21]
29	Patrick Monsieurs	[10]
30	Pieter Monsieurs	[14]
31	Bart De Moor	[1] [2] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [20] [22] [23]
32	Yves Moreau	[1] [2] [3] [4] [5] [6] [7] [15]
33	Bart Naudts	[12] [13]
34	Yves Van de Peer	[3] [17] [21]
35	Nathalie Pochet	[9] [11]
36	Nicolas Pollet	[19]
37	Piet van Remortel	[13] [17] [20]
38	Stephane Rombauts	[1] [2] [3] [4] [6]
39	Pierre Rouzé	[1] [2] [3] [4] [6]
40	Yvan Saeys	[17]
41	Qizheng Sheng	[15]
42	Frank De Smet	[5] [6] [7] [9] [11]
43	Riet De Smet	[21]
44	Valerie Storms	[23]
45	Hong Sun	[22] [23]
46	Johan A. K. Suykens	[9] [11]
47	Gert Thijs	[1] [2] [3] [4] [5] [6] [7] [14]
48	Pushpike Jayantha Thilakarathne	[24]
49	Raphael Thuret	[19]
50	Jozef Vanderleyden	[14]
51	Geert Verbeke	[24]
52	Ignace Vergote	[11]
53	Alain Verschoren	[13]
54	Annemieke Verstuyf	[23]
55	Hui Zhao	[16]