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Bin Ma Vis

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*2009
86EEWeiming Li, Bin Ma, Kaizhong Zhang: Amino Acid Classification and Hash Seeds for Homology Search. BICoB 2009: 44-51
85EEXiaowen Liu, Yonghua Han, Denis Yuen, Bin Ma: Automated protein (re)sequencing with MS/MS and a homologous database yields almost full coverage and accuracy. Bioinformatics 25(17): 2174-2180 (2009)
84EEBin Ma, Hongyi Yao: Seed optimization for i.i.d. similarities is no easier than optimal Golomb ruler design. Inf. Process. Lett. 109(19): 1120-1124 (2009)
83EEShihyen Chen, Bin Ma, Kaizhong Zhang: On the similarity metric and the distance metric. Theor. Comput. Sci. 410(24-25): 2365-2376 (2009)
2008
82EEXiaole Bai, Wenjun Gu, Sriram Chellappan, Xun Wang, Dong Xuan, Bin Ma: PAS: Predicate-Based Authentication Services Against Powerful Passive Adversaries. ACSAC 2008: 433-442
81EEBin Ma, Hongyi Yao: Seed Optimization Is No Easier than Optimal Golomb Ruler Design. APBC 2008: 133-144
80EEChong Long, Xiaoyan Zhu, Ming Li, Bin Ma: Information shared by many objects. CIKM 2008: 1213-1220
79EEBin Ma: Why Greed Works for Shortest Common Superstring Problem. CPM 2008: 244-254
78EEChien-Lin Huang, Chung-Hsien Wu, Haizhou Li, Chia-Hsin Hsieh, Bin Ma: Unsupervised pronunciation grammar growing using knowledge-based and data-driven approaches. ICME 2008: 1097-1100
77EEOmid Dehzangi, Bin Ma, Chng Eng Siong, Haizhou Li: Fuzzy rule selection using Iterative Rule Learning for speech data classification. ICPR 2008: 1-4
76EEBin Ma, Xiaoming Sun: More Efficient Algorithms for Closest String and Substring Problems. RECOMB 2008: 396-409
75EEBin Ma: Peptide De Novo Sequencing with MS/MS. Encyclopedia of Algorithms 2008
74EEHao Lin, Zefeng Zhang, Michael Q. Zhang, Bin Ma, Ming Li: ZOOM! Zillions of oligos mapped. Bioinformatics 24(21): 2431-2437 (2008)
73EEDonglai Zhu, Haizhou Li, Bin Ma, Chin-Hui Lee: Optimizing the Performance of Spoken Language Recognition With Discriminative Training. IEEE Transactions on Audio, Speech & Language Processing 16(8): 1642-1653 (2008)
72EEXiaolin Wu, Bin Ma, Nima Sarshar: Rainbow Network Flow of Multiple Description Codes. IEEE Transactions on Information Theory 54(10): 4565-4574 (2008)
71EEBaozhen Shan, Bin Ma, Kaizhong Zhang, Gilles Lajoie: Complexities and Algorithms for Glycan Sequencing Using Tandem Mass Spectrometry. J. Bioinformatics and Computational Biology 6(1): 77-91 (2008)
70EEBin Ma, Lei Xin, Kaizhong Zhang: A new quartet approach for reconstructing phylogenetic trees: quartet joining method. J. Comb. Optim. 16(3): 293-306 (2008)
2007
69 Bin Ma, Kaizhong Zhang: Combinatorial Pattern Matching, 18th Annual Symposium, CPM 2007, London, Canada, July 9-11, 2007, Proceedings Springer 2007
68EEBaozhen Shan, Bin Ma, Kaizhong Zhang, Gilles Lajoie: Complexities and Algorithms for Glycan Structure Sequencing using Tandem Mass Spectrometry. APBC 2007: 297-306
67EEShihyen Chen, Bin Ma, Kaizhong Zhang: The Normalized Similarity Metric and Its Applications. BIBM 2007: 172-180
66EEChin-Wei Eugene Koh, Hanwu Sun, Tin Lay Nwe, Trung Hieu Nguyen, Bin Ma, Chng Eng Siong, Haizhou Li, Susanto Rahardja: Speaker Diarization Using Direction of Arrival Estimate and Acoustic Feature Information: The I2R-NTU Submission for the NIST RT 2007 Evaluation. CLEAR 2007: 484-496
65EELei Xin, Bin Ma, Kaizhong Zhang: A New Quartet Approach for Reconstructing Phylogenetic Trees: Quartet Joining Method. COCOON 2007: 40-50
64EEMiklós Csürös, Bin Ma: Rapid Homology Search with Neighbor Seeds. Algorithmica 48(2): 187-202 (2007)
63EESriram Chellappan, Wenjun Gu, Xiaole Bai, Dong Xuan, Bin Ma, Kaizhong Zhang: Deploying Wireless Sensor Networks under Limited Mobility Constraints. IEEE Trans. Mob. Comput. 6(10): 1142-1157 (2007)
62EESriram Chellappan, Xiaole Bai, Bin Ma, Dong Xuan, Changqing Xu: Mobility Limited Flip-Based Sensor Networks Deployment. IEEE Trans. Parallel Distrib. Syst. 18(2): 199-211 (2007)
61EEHaizhou Li, Bin Ma, Chin-Hui Lee: A Vector Space Modeling Approach to Spoken Language Identification. IEEE Transactions on Audio, Speech & Language Processing 15(1): 271-284 (2007)
60EEBin Ma, Haizhou Li, Rong Tong: Spoken Language Recognition Using Ensemble Classifiers. IEEE Transactions on Audio, Speech & Language Processing 15(7): 2053-2062 (2007)
59EEBin Ma, Lusheng Wang, Ming Li: Near optimal multiple alignment within a band in polynomial time. J. Comput. Syst. Sci. 73(6): 997-1011 (2007)
58EEBin Ma, Ming Li: On the complexity of the spaced seeds. J. Comput. Syst. Sci. 73(7): 1024-1034 (2007)
2006
57 Qiang Huo, Bin Ma, Chng Eng Siong, Haizhou Li: Chinese Spoken Language Processing, 5th International Symposium, ISCSLP 2006, Singapore, December 13-16, 2006, Proceedings Springer 2006
56EEKong-Aik Lee, Hanwu Sun, Rong Tong, Bin Ma, Minghui Dong, Changhuai You, Donglai Zhu, Chin-Wei Eugene Koh, Lei Wang, Tomi Kinnunen, Chng Eng Siong, Haizhou Li: The IIR Submission to CSLP 2006 Speaker Recognition Evaluation. ISCSLP 2006: 494-505
55EERong Tong, Bin Ma, Kong-Aik Lee, Changhuai You, Donglai Zhu, Tomi Kinnunen, Hanwu Sun, Minghui Dong, Chng Eng Siong, Haizhou Li: Fusion of Acoustic and Tokenization Features for Speaker Recognition. ISCSLP 2006: 566-577
54EEMing Li, Bin Ma, Louxin Zhang: Superiority and complexity of the spaced seeds. SODA 2006: 444-453
53EEJian Liu, Bin Ma, Ming Li: Prima: Peptide Robust Identification from Ms/ms Spectra. J. Bioinformatics and Computational Biology 4(1): 125-138 (2006)
52EEBin Ma, Lieyu Wu, Kaizhong Zhang: Improving the Sensitivity and Specificity of Protein Homology Search by Incorporating Predicted Secondary Structures. J. Bioinformatics and Computational Biology 4(3): 709-720 (2006)
51EEJinbo Xu, Daniel G. Brown, Ming Li, Bin Ma: Optimizing Multiple Spaced Seeds for Homology Search. Journal of Computational Biology 13(7): 1355-1368 (2006)
2005
50EEHaizhou Li, Bin Ma: A Phonotactic Language Model for Spoken Language Identification. ACL 2005
49EEJian Liu, Bin Ma, Ming Li: PRIME: Peptide robust identification from MS/MS spectra. APBC 2005: 181-190
48EEMiklós Csürös, Bin Ma: Rapid Homology Search with Two-Stage Extension and Daughter Seeds. COCOON 2005: 104-114
47EEBin Ma, Kaizhong Zhang: On the Longest Common Rigid Subsequence Problem. CPM 2005: 11-20
46EEBin Ma, Lieyu Wu, Kaizhong Zhang: Improving the Sensitivity and Specificity of Protein Homology Search by Incorporating Predicted Secondary Structures. International Conference on Computational Science (2) 2005: 960-967
45EEBin Ma, Haizhou Li: A phonotactic-semantic paradigm for automatic spoken document classification. SIGIR 2005: 369-376
44EEDerek Kisman, Ming Li, Bin Ma, Li Wang: tPatternHunter: gapped, fast and sensitive translated homology search . Bioinformatics 21(4): 542-544 (2005)
43EEYonghua Han, Bin Ma, Kaizhong Zhang: An automata approach to match gapped sequence tags against protein database. Int. J. Found. Comput. Sci. 16(3): 487-497 (2005)
42EEYonghua Han, Bin Ma, Kaizhong Zhang: Spider: Software for Protein Identification from Sequence Tags with de Novo Sequencing Error. J. Bioinformatics and Computational Biology 3(3): 697-716 (2005)
41EEBin Ma, Kaizhong Zhang, Chengzhi Liang: An effective algorithm for peptide de novo sequencing from MS/MS spectra. J. Comput. Syst. Sci. 70(3): 418-430 (2005)
2004
40EEXiaolong Yang, Qianbin Chen, Youju Mao, Keping Long, Bin Ma: Mobility Prediction-Based Wireless Resource Allocation and Reservation. AWCC 2004: 1-11
39EEYonghua Han, Bin Ma, Kaizhong Zhang: An Automata Approach to Match Gapped Sequence Tags Against Protein Database. CIAA 2004: 167-177
38EEJinbo Xu, Daniel G. Brown, Ming Li, Bin Ma: Optimizing Multiple Spaced Seeds for Homology Search. CPM 2004: 47-58
37EEYonghua Han, Bin Ma, Kaizhong Zhang: SPIDER: Software for Protein Identification from Sequence Tags with De Novo Sequencing Error. CSB 2004: 206-215
36EEUri Keich, Ming Li, Bin Ma, John Tromp: On spaced seeds for similarity search. Discrete Applied Mathematics 138(3): 253-263 (2004)
35EEMing Li, Xin Chen, Xin Li, Bin Ma, Paul M. B. Vitányi: The similarity metric. IEEE Transactions on Information Theory 50(12): 3250-3264 (2004)
34EEMing Li, Bin Ma, Derek Kisman, John Tromp: Patternhunter Ii: Highly Sensitive and Fast Homology Search. J. Bioinformatics and Computational Biology 2(3): 417-440 (2004)
33EEDaniel G. Brown, Ming Li, Bin Ma: A Tutorial of Recent Developments in the Seeding of Local Alignment. J. Bioinformatics and Computational Biology 2(4): 819-842 (2004)
32EETao Jiang, Guohui Lin, Bin Ma, Kaizhong Zhang: The longest common subsequence problem for arc-annotated sequences. J. Discrete Algorithms 2(2): 257-270 (2004)
2003
31EEBin Ma, Zhuozhi Wang, Kaizhong Zhang: Alignment between Two Multiple Alignments. CPM 2003: 254-265
30EEBin Ma, Kaizhong Zhang, Chengzhi Liang: An Effective Algorithm for the Peptide De Novo Sequencing from MS/MS Spectrum. CPM 2003: 266-277
29EEMing Li, Xin Chen, Xin Li, Bin Ma, Paul M. B. Vitányi: The similarity metric. SODA 2003: 863-872
28 Louxin Zhang, Bin Ma, Lusheng Wang, Ying Xu: Greedy method for inferring tandem duplication history. Bioinformatics 19(12): 1497-1504 (2003)
27EEJ. Kevin Lanctot, Ming Li, Bin Ma, Shaojiu Wang, Louxin Zhang: Distinguishing string selection problems. Inf. Comput. 185(1): 41-55 (2003)
26EEXiaotie Deng, Guojun Li, Zimao Li, Bin Ma, Lusheng Wang: Genetic Design of Drugs Without Side-Effects. SIAM J. Comput. 32(4): 1073-1090 (2003)
2002
25EEXiaotie Deng, Guojun Li, Zimao Li, Bin Ma, Lusheng Wang: A PTAS for Distinguishing (Sub)string Selection. ICALP 2002: 740-751
24EELouxin Zhang, Bin Ma, Lusheng Wang: Efficient Methods for Inferring Tandem Duplication History. WABI 2002: 97-111
23 Xin Chen, Ming Li, Bin Ma, John Tromp: DNACompress: fast and effective DNA sequence compression. Bioinformatics 18(12): 1696-1698 (2002)
22 Bin Ma, John Tromp, Ming Li: PatternHunter: faster and more sensitive homology search. Bioinformatics 18(3): 440-445 (2002)
21EEMing Li, Bin Ma, Lusheng Wang: On the closest string and substring problems. J. ACM 49(2): 157-171 (2002)
20EEMing Li, Bin Ma, Lusheng Wang: Finding Similar Regions in Many Sequences. J. Comput. Syst. Sci. 65(1): 73-96 (2002)
19EEDeep Jaitly, Paul E. Kearney, Guo-Hui Lin, Bin Ma: Methods for reconstructing the history of tandem repeats and their application to the human genome. J. Comput. Syst. Sci. 65(3): 494-507 (2002)
18 Tao Jiang, Guohui Lin, Bin Ma, Kaizhong Zhang: A General Edit Distance between RNA Structures. Journal of Computational Biology 9(2): 371-388 (2002)
17EEBin Ma, Qiong Wu: Parametric study of repeatable gait for a planar five-link biped. Robotica 20(5): 493-498 (2002)
16EEBin Ma, Lusheng Wang, Kaizhong Zhang: Computing similarity between RNA structures. Theor. Comput. Sci. 276(1-2): 111-132 (2002)
2001
15EEGuohui Lin, Bin Ma, Kaizhong Zhang: Edit distance between two RNA structures. RECOMB 2001: 211-220
14EEMing Li, Xin Chen, Xin Li, Bin Ma, Paul M. B. Vitányi: The similarity metric CoRR cs.CC/0111054: (2001)
2000
13EETao Jiang, Guohui Lin, Bin Ma, Kaizhong Zhang: The Longest Common Subsequence Problem for Arc-Annotated Sequences. CPM 2000: 154-165
12EEBin Ma: A Polynominal Time Approximation Scheme for the Closest Substring Problem. CPM 2000: 99-107
11EEMing Li, Bin Ma, Lusheng Wang: Near optimal multiple alignment within a band in polynomial time. STOC 2000: 425-434
10EEMing Li, Bin Ma, Lusheng Wang: On The Closest String and Substring Problems CoRR cs.CE/0002012: (2000)
9 Lusheng Wang, Bin Ma, Ming Li: Fixed topology alignment with recombination. Discrete Applied Mathematics 104(1-3): 281-300 (2000)
8 Bin Ma, Lusheng Wang: On the Inapproximability of Disjoint Paths and Minimum Steiner Forest with Bandwidth Constraints. J. Comput. Syst. Sci. 60(1): 1-12 (2000)
7EEBin Ma, Ming Li, Louxin Zhang: From Gene Trees to Species Trees. SIAM J. Comput. 30(3): 729-752 (2000)
1999
6EEKaizhong Zhang, Lusheng Wang, Bin Ma: Computing Similarity between RNA Structures. CPM 1999: 281-293
5EEJ. Kevin Lanctot, Ming Li, Bin Ma, Shaojiu Wang, Louxin Zhang: Distinguishing String Selection Problems. SODA 1999: 633-642
4EEMing Li, Bin Ma, Lusheng Wang: Finding Similar Regions in Many Strings. STOC 1999: 473-482
3 Bin Ma, Lusheng Wang, Louxin Zhang: Fitting Distances by Tree Metrics with Increment Error. J. Comb. Optim. 3(2-3): 213-225 (1999)
1998
2 Bin Ma, Lusheng Wang, Ming Li: Fixed Topology Alignment with Recombination. CPM 1998: 174-188
1EEBin Ma, Ming Li, Louxin Zhang: On reconstructing species trees from gene trees in term of duplications and losses. RECOMB 1998: 182-191

Coauthor Index

1Xiaole Bai [62] [63] [82]
2Daniel G. Brown [33] [38] [51]
3Sriram Chellappan [62] [63] [82]
4Qianbin Chen [40]
5Shihyen Chen [67] [83]
6Xin Chen [14] [23] [29] [35]
7Miklós Csürös [48] [64]
8Omid Dehzangi [77]
9Xiaotie Deng [25] [26]
10Minghui Dong [55] [56]
11Wenjun Gu [63] [82]
12Yonghua Han [37] [39] [42] [43] [85]
13Chia-Hsin Hsieh [78]
14Chien-Lin Huang [78]
15Qiang Huo [57]
16Deep Jaitly [19]
17Tao Jiang [13] [18] [32]
18Paul E. Kearney [19]
19Uri Keich [36]
20Tomi Kinnunen [55] [56]
21Derek Kisman [34] [44]
22Chin-Wei Eugene Koh [56] [66]
23Gilles Lajoie [68] [71]
24J. Kevin Lanctot [5] [27]
25Chin-Hui Lee [61] [73]
26Kong-Aik Lee [55] [56]
27Guojun Li [25] [26]
28Haizhou Li [45] [50] [55] [56] [57] [60] [61] [66] [73] [77] [78]
29Ming Li [1] [2] [4] [5] [7] [9] [10] [11] [14] [20] [21] [22] [23] [27] [29] [33] [34] [35] [36] [38] [44] [49] [51] [53] [54] [58] [59] [74] [80]
30Weiming Li [86]
31Xin Li [14] [29] [35]
32Zimao Li [25] [26]
33Chengzhi Liang [30] [41]
34Guohui Lin (Guo-Hui Lin) [13] [15] [18] [19] [32]
35Hao Lin [74]
36Jian Liu [49] [53]
37Xiaowen Liu [85]
38Chong Long [80]
39Keping Long [40]
40Youju Mao [40]
41Trung Hieu Nguyen [66]
42Tin Lay Nwe [66]
43Susanto Rahardja [66]
44Nima Sarshar [72]
45Baozhen Shan [68] [71]
46Chng Eng Siong (Engsiong Chng) [55] [56] [57] [66] [77]
47Hanwu Sun [55] [56] [66]
48Xiaoming Sun [76]
49Rong Tong [55] [56] [60]
50John Tromp [22] [23] [34] [36]
51Paul M. B. Vitányi [14] [29] [35]
52Lei Wang [56]
53Li Wang [44]
54Lusheng Wang [2] [3] [4] [6] [8] [9] [10] [11] [16] [20] [21] [24] [25] [26] [28] [59]
55Shaojiu Wang [5] [27]
56Xun Wang [82]
57Zhuozhi Wang [31]
58Chung-Hsien Wu [78]
59Lieyu Wu [46] [52]
60Qiong Wu [17]
61Xiaolin Wu [72]
62Lei Xin [65] [70]
63Changqing Xu [62]
64Jinbo Xu [38] [51]
65Ying Xu [28]
66Dong Xuan [62] [63] [82]
67Xiaolong Yang [40]
68Hongyi Yao [81] [84]
69Changhuai You [55] [56]
70Denis Yuen [85]
71Kaizhong Zhang [6] [13] [15] [16] [18] [30] [31] [32] [37] [39] [41] [42] [43] [46] [47] [52] [63] [65] [67] [68] [69] [70] [71] [83] [86]
72Louxin Zhang [1] [3] [5] [7] [24] [27] [28] [54]
73Michael Q. Zhang [74]
74Zefeng Zhang [74]
75Donglai Zhu [55] [56] [73]
76Xiaoyan Zhu [80]

Colors in the list of coauthors

Copyright © Tue Nov 3 08:52:44 2009 by Michael Ley (ley@uni-trier.de)