Qi Liu Vis

*	2009
37	EE	Qi Liu, Gabriel A. Wainer: A Performance Evaluation of the Lightweight Time Warp Protocol in Optimistic Parallel Simulation of DEVS-Based Environmental Models. PADS 2009: 27-34
36	EE	Qi Liu, Jinling Huang, Huiqing Liu, Ping Wan, Xiuzi Ye, Ying Xu: Analyses of domains and domain fusions in human proto-oncogenes. BMC Bioinformatics 10: (2009)
35	EE	Irina Dinu, John D. Potter, Thomas Mueller, Qi Liu, Adeniyi J. Adewale, Gian S. Jhangri, Gunilla Einecke, Konrad S. Famulski, Philip Halloran, Yutaka Yasui: Gene-set analysis and reduction. Briefings in Bioinformatics 10(1): 24-34 (2009)
34	EE	Qi Liu, Douglas B. West, Gexin Yu: Implications among linkage properties in graphs. Journal of Graph Theory 60(4): 327-337 (2009)
33	EE	Gabriel A. Wainer, Qi Liu: Tools for Graphical Specification and Visualization of DEVS Models. Simulation 85(3): 131-158 (2009)
	2008
32	EE	Xiaofeng Nie, Yuewu Wang, Jiwu Jing, Qi Liu: Understanding the Impact of Overlay Topologies on Peer-to-Peer Worm Propagation. CSSE (3) 2008: 863-867
31	EE	Qi Liu, Gabriel A. Wainer: Lightweight Time Warp - A Novel Protocol for Parallel Optimistic Simulation of Large-Scale DEVS and Cell-DEVS Models. DS-RT 2008: 131-138
30	EE	Qi Liu, Nigel Linge: A Novel Platform for Context Maintenance and Discovery in a Ubiquitous Environment. EUC (2) 2008: 565-570
29	EE	Qi Liu, Minghu Jiang, Zhi Chen: Query Recommendation with TF-IQF Model and Popularity Factor. FSKD (4) 2008: 203-207
28	EE	Gabriel A. Wainer, Qi Liu, Julien Chazal, Loïc Quinet, Mamadou K. Traoré: Performance analysis of web-based distributed simulation in DCD++: a case study across the Atlantic Ocean. SpringSim 2008: 413-420
27	EE	Bo Feng, Qi Liu, Gabriel A. Wainer: Parallel simulation of DEVS and Cell-DEVS models on Windows-based PC cluster systems. SpringSim 2008: 439-446
26	EE	Qi Liu, Jiwu Jing, Yuewu Wang: An Improved Method of Hybrid Worm Simulation. WAIM 2008: 612-618
25	EE	Qi Liu, Yu Yang, Chun Chen, Jiajun Bu, Yin Zhang, Xiuzi Ye: RNACompress: Grammar-based compression and informational complexity measurement of RNA secondary structure. BMC Bioinformatics 9: (2008)
24	EE	Juan Cui, Qi Liu, David Puett, Ying Xu: Computational prediction of human proteins that can be secreted into the bloodstream. Bioinformatics 24(20): 2370-2375 (2008)
23	EE	Shengzhong Deng, Chan-Hyun Youn, Qi Liu, Hoe Young Kim, Taoran Yu, Young Hun Kim: Policy Adjuster-driven Grid Workflow Management for Collaborative Heart Disease Identification System. JIPS 4(3): 103-112 (2008)
22	EE	Adeniyi J. Adewale, Irina Dinu, John D. Potter, Qi Liu, Yutaka Yasui: Pathway Analysis of Microarray Data via Regression. Journal of Computational Biology 15(3): 269-277 (2008)
21	EE	Qi Liu, Victor Olman, Huiqing Liu, Xiuzi Ye, Shilun Qiu, Ying Xu: RNACluster: An integrated tool for RNA secondary structure comparison and clustering. Journal of Computational Chemistry 29(9): 1517-1526 (2008)
20	EE	József Balogh, Stephen G. Hartke, Qi Liu, Gexin Yu: On the First-Fit Chromatic Number of Graphs. SIAM J. Discrete Math. 22(3): 887-900 (2008)
	2007
19	EE	Qi Liu, Gabriel A. Wainer: Performance Analysis of an Optimistic Simulator for CD++. Annual Simulation Symposium 2007: 123-132
18	EE	Qi Liu, Irina Dinu, Adeniyi J. Adewale, John D. Potter, Yutaka Yasui: Comparative evaluation of gene-set analysis methods. BMC Bioinformatics 8: (2007)
17	EE	Irina Dinu, John D. Potter, Thomas Mueller, Qi Liu, Adeniyi J. Adewale, Gian S. Jhangri, Gunilla Einecke, Konrad S. Famulski, Philip Halloran, Yutaka Yasui: Improving gene set analysis of microarray data by SAM-GS. BMC Bioinformatics 8: (2007)
16	EE	Jingchun Sun, Yan Sun, Guohui Ding, Qi Liu, Chuan Wang, Youyu He, Tieliu Shi, Yixue Li, Zhongming Zhao: InPrePPI: an integrated evaluation method based on genomic context for predicting protein-protein interactions in prokaryotic genomes. BMC Bioinformatics 8: (2007)
15	EE	Qi Liu, Gabriel A. Wainer: Parallel Environment for DEVS and Cell-DEVS Models. Simulation 83(6): 449-471 (2007)
	2006
14	EE	Yuehua Dai, Yuan Hu, Qi Liu, Daoming Ke, Junning Chen: Physics-based Modeling and Simulation of Dual Material Gate(DMG) LDMOS. APCCAS 2006: 1500-1503
13	EE	Qi Liu, Xiuzi Ye, Yin Zhang: A Hopfield Neural Network Based Algorithm for RNA Secondary Structure Prediction. IMSCCS (1) 2006: 10-16
12	EE	Qi Liu, Alexei Sourin: Function-based shape modeling and visualization in X3D. Web3D 2006: 131-141
11	EE	Qi Liu, Alexei Sourin: Function-based shape modelling extension of the Virtual Reality Modelling Language. Computers & Graphics 30(4): 629-645 (2006)
10	EE	Qi Liu, Alexei Sourin: Function-defined shape metamorphoses in visual cyberworlds. The Visual Computer 22(12): 977-990 (2006)
	2005
9	EE	Qi Liu, Alexei Sourin: Function-based Time-dependent Shape Modeling on the Web. CW 2005: 35-42
8	EE	Qi Liu, Alexei Sourin: Function-defined shape metamorphoses in VRML. GRAPHITE 2005: 339-346
7	EE	Qi Liu, Gabriel A. Wainer: Simulating Market Dynamics with CD++. International Conference on Computational Science (2) 2005: 368-372
6	EE	Qi Liu, Alexei Sourin: Function-based representation of complex geometry and appearance. Web3D 2005: 123-134
5	EE	Jingchun Sun, Jinlin Xu, Zhen Liu, Qi Liu, Aimin Zhao, Tieliu Shi, Yi-Xue Li: Refined phylogenetic profiles method for predicting protein-protein interactions. Bioinformatics 21(16): 3409-3415 (2005)
	2004
4	EE	Qi Liu, Alexei Sourin: Analytically-Defined Collaborative Shape Modeling in VRML. CW 2004: 70-77
3	EE	Yong Deng, Qi Liu, Yi-Xue Li: Scoring hidden Markov models to discriminate -barrel membrane proteins. Computational Biology and Chemistry 28(3): 189-194 (2004)
	2003
2	EE	Qi Liu, Yi-Sheng Zhu, Baohua Wang, Yi-Xue Li: A HMM-based method to predict the transmembrane regions of \beta-barrel membrane proteins. Computational Biology and Chemistry 27(1): 69-76 (2003)
1	EE	Qi Liu, Yi-Sheng Zhu, Baohua Wang, Yi-Xue Li: Identification of -barrel membrane proteins based on amino acid composition properties and predicted secondary structure. Computational Biology and Chemistry 27(3): 355-361 (2003)

Coauthor Index

1	Adeniyi J. Adewale	[17] [18] [22] [35]
2	József Balogh	[20]
3	Jiajun Bu	[25]
4	Julien Chazal	[28]
5	Chun Chen	[25]
6	Junning Chen	[14]
7	Zhi Chen	[29]
8	Juan Cui	[24]
9	Yuehua Dai	[14]
10	Shengzhong Deng	[23]
11	Yong Deng	[3]
12	Guohui Ding	[16]
13	Irina Dinu	[17] [18] [22] [35]
14	Gunilla Einecke	[17] [35]
15	Konrad S. Famulski	[17] [35]
16	Bo Feng	[27]
17	Philip Halloran	[17] [35]
18	Stephen G. Hartke	[20]
19	Youyu He	[16]
20	Yuan Hu	[14]
21	Jinling Huang	[36]
22	Gian S. Jhangri	[17] [35]
23	Minghu Jiang	[29]
24	Jiwu Jing	[26] [32]
25	Daoming Ke	[14]
26	Hoe Young Kim	[23]
27	Young Hun Kim	[23]
28	Yixue Li (Yi-Xue Li)	[1] [2] [3] [5] [16]
29	Nigel Linge	[30]
30	Huiqing Liu	[21] [36]
31	Zhen Liu	[5]
32	Thomas Mueller	[17] [35]
33	Xiaofeng Nie	[32]
34	Victor Olman	[21]
35	John D. Potter	[17] [18] [22] [35]
36	David Puett	[24]
37	Shilun Qiu	[21]
38	Loïc Quinet	[28]
39	Tieliu Shi	[5] [16]
40	Alexei Sourin	[4] [6] [8] [9] [10] [11] [12]
41	Jingchun Sun	[5] [16]
42	Yan Lindsay Sun (Yan Sun)	[16]
43	Mamadou K. Traoré	[28]
44	Gabriel A. Wainer	[7] [15] [19] [27] [28] [31] [33] [37]
45	Ping Wan	[36]
46	Baohua Wang	[1] [2]
47	Chuan Wang	[16]
48	Yuewu Wang	[26] [32]
49	Douglas B. West	[34]
50	Jinlin Xu	[5]
51	Ying Xu	[21] [24] [36]
52	Yu Yang	[25]
53	Yutaka Yasui	[17] [18] [22] [35]
54	Xiuzi Ye	[13] [21] [25] [36]
55	Chan-Hyun Youn	[23]
56	Gexin Yu	[20] [34]
57	Taoran Yu	[23]
58	Yin Zhang	[13] [25]
59	Aimin Zhao	[5]
60	Zhongming Zhao	[16]
61	Yi-Sheng Zhu	[1] [2]

Colors in the list of coauthors