Hongfang Liu Vis

*	2009
36	EE	Medha Umarji, Carolyn B. Seaman, Akif Günes Koru, Hongfang Liu: Software Engineering Education for Bioinformatics. CSEE&T 2009: 216-223
35	EE	Cecilia N. Arighi, Hongfang Liu, Darren A. Natale, Winona C. Barker, Harold J. Drabkin, Judith A. Blake, Barry Smith, Cathy H. Wu: TGF-beta signaling proteins and the Protein Ontology. BMC Bioinformatics 10(S-5): (2009)
34	EE	Akif Günes Koru, Dongsong Zhang, Khaled El Emam, Hongfang Liu: An Investigation into the Functional Form of the Size-Defect Relationship for Software Modules. IEEE Trans. Software Eng. 35(2): 293-304 (2009)
	2008
33		Ionut Bebu, Françoise Seillier-Moiseiwitsch, Hongfang Liu: Analysis of Microarray Titration Experiments. BIOCOMP 2008: 942-946
32	EE	Michael C. Ryan, Barry Zeeberg, Natasha J. Caplen, James A. Cleland, Ari B. Kahn, Hongfang Liu, John N. Weinstein: SpliceCenter: A suite of web-based bioinformatic applications for evaluating the impact of alternative splicing on RT-PCR, RNAi, microarray, and peptide-based studies. BMC Bioinformatics 9: (2008)
31	EE	Hans A. Kestler, André Müller, Johann M. Kraus, Malte Buchholz, Thomas M. Gress, Hongfang Liu, David W. Kane, Barry Zeeberg, John N. Weinstein: VennMaster: Area-proportional Euler diagrams for functional GO analysis of microarrays. BMC Bioinformatics 9: (2008)
30	EE	Akif Günes Koru, Khaled El Emam, Dongsong Zhang, Hongfang Liu, Divya Mathew: Theory of relative defect proneness. Empirical Software Engineering 13(5): 473-498 (2008)
	2007
29	EE	Ionut Bebu, Françoise Seillier-Moiseiwitsch, Hongfang Liu: Semiparametric RMA Background-Correction for Oligonucleotide Arrays. BIBE 2007: 1404-1408
28	EE	Hongfang Liu, Manabu Torii, Zhang-Zhi Hu, Cathy H. Wu: Mapping Gene/Protein Names in Free Text to Biomedical Databases. ICDM Workshops 2007: 101-106
27	EE	Akif Günes Koru, Dongsong Zhang, Hongfang Liu: Modeling the Effect of Size on Defect Proneness for Open-Source Software. ICSE Companion 2007: 115-124
26	EE	Manabu Torii, Hongfang Liu: Classifier Ensemble for Biomedical Document Retrieval. LBM (Short Papers) 2007
25	EE	Akif Günes Koru, Dongsong Zhang, Hongfang Liu: Effect of Coupling on Defect Proneness in Evolutionary Open-Source Software Development. OSS 2007: 271-276
24	EE	Miguel E. Ruiz, Ying Sun, Jianqiang Wang, Hongfang Liu: Exploring Traits of Adjectives to Predict Polarity Opinion in Blogs and Semantic Filters in Genomics. TREC 2007
23	EE	Manabu Torii, Zhang-Zhi Hu, Min Song, Cathy H. Wu, Hongfang Liu: A comparison study on algorithms of detecting long forms for short forms in biomedical text. BMC Bioinformatics 8(S-9): (2007)
22	EE	Darren A. Natale, Cecilia N. Arighi, Winona C. Barker, Judith A. Blake, Ti-Cheng Chang, Zhang-Zhi Hu, Hongfang Liu, Barry Smith, Cathy H. Wu: Framework for a Protein Ontology. BMC Bioinformatics 8(S-9): (2007)
21	EE	Ari B. Kahn, Michael C. Ryan, Hongfang Liu, Barry Zeeberg, D. Curtis Jamison, John N. Weinstein: SpliceMiner: a high-throughput database implementation of the NCBI Evidence Viewer for microarray splice variant analysis. BMC Bioinformatics 8: (2007)
20	EE	Hongfang Liu, Barry Zeeberg, Gang Qu, Akif Günes Koru, Alessandro Ferrucci, Ari B. Kahn, Michael C. Ryan, Antej Nuhanovic, Peter J. Munson, William C. Reinhold, David W. Kane, John N. Weinstein: AffyProbeMiner: a web resource for computing or retrieving accurately redefined Affymetrix probe sets. Bioinformatics 23(18): 2385-2390 (2007)
19	EE	Akif Günes Koru, Hongfang Liu: Identifying and characterizing change-prone classes in two large-scale open-source products. Journal of Systems and Software 80(1): 63-73 (2007)
	2006
18	EE	Manabu Torii, Hongfang Liu: Headwords and Suffixes in Biomedical Names. KDLL 2006: 29-41
17	EE	Hongfang Liu, Zhang-Zhi Hu, Jian Zhang, Cathy H. Wu: BioThesaurus: a web-based thesaurus of protein and gene names. Bioinformatics 22(1): 103-105 (2006)
16	EE	Li Zhou, Ying Tao, James J. Cimino, Elizabeth S. Chen, Hongfang Liu, Yves A. Lussier, George Hripcsak, Carol Friedman: Terminology model discovery using natural language processing and visualization techniques. Journal of Biomedical Informatics: 626-636 (2006)
	2005
15	EE	Hongfang Liu, Zhang-Zhi Hu, Cathy H. Wu: Dynamically Generating a Protein Entity Dictionary Using Online Resources. ACL 2005
14	EE	Alan R. Aronson, Dina Demner-Fushman, Susanne M. Humphrey, Jimmy J. Lin, Patrick Ruch, Miguel E. Ruiz, Lawrence H. Smith, Lorraine K. Tanabe, W. John Wilbur, Hongfang Liu: Fusion of Knowledge-Intensive and Statistical Approaches for Retrieving and Annotating Textual Genomics Documents. TREC 2005
13	EE	Akif Günes Koru, Hongfang Liu: An investigation of the effect of module size on defect prediction using static measures. ACM SIGSOFT Software Engineering Notes 30(4): 1-5 (2005)
12	EE	Hongfang Liu, Zhang-Zhi Hu, Cathy H. Wu: DynGO: a tool for visualizing and mining of Gene Ontology and its associations. BMC Bioinformatics 6: 201 (2005)
11	EE	Lifeng Chen, Hongfang Liu, Carol Friedman: Gene name ambiguity of eukaryotic nomenclatures. Bioinformatics 21(2): 248-256 (2005)
10	EE	Akif Günes Koru, Hongfang Liu: Building Effective Defect-Prediction Models in Practice. IEEE Software 22(6): 23-29 (2005)
	2004
9	EE	Han-Yu Chuang, Hongfang Liu, Stuart Brown, Cameron McMunn-Coffran, Cheng-Yan Kao, D. Frank Hsu: Identifying Significant Genes from Microarray Data. BIBE 2004: 358-365
8	EE	Han-Yu Chuang, Hongfang Liu, Fang-An Chen, Cheng-Yan Kao, D. Frank Hsu: Combination Methods in Microarray Analysis. ISPAN 2004: 625-630
7	EE	Olivia Tuason, Lifeng Chen, Hongfang Liu, Judith A. Blake, Carol Friedman: Biological Nomenclatures: A Source of Lexical Knowledge and Ambiguity. Pacific Symposium on Biocomputing 2004: 238-249
6	EE	Alan R. Aronson, Susanne M. Humphrey, Nicholas C. Ide, Won Kim, Russell R. Loane, James G. Mork, Lawrence H. Smith, Lorraine K. Tanabe, W. John Wilbur, Natalie Xie, Dina Demner-Fushman, Hongfang Liu: Knowledge-Intensive and Statistical Approaches to the Retrieval and Annotation of Genomics MEDLINE Citations. TREC 2004
5	EE	Zhang-Zhi Hu, Inderjeet Mani, Vincent Hermoso, Hongfang Liu, Cathy H. Wu: iProLINK: an integrated protein resource for literature mining. Computational Biology and Chemistry 28(5-6): 409-416 (2004)
	2003
4	EE	Hongfang Liu, Carol Friedman: Mining Terminological Knowledge in Large Biomedical Corpora. Pacific Symposium on Biocomputing 2003: 415-426
3	EE	Carol Friedman, Hongfang Liu, Lyudmila Shagina: A vocabulary development and visualization tool based on natural language processing and the mining of textual patient reports. Journal of Biomedical Informatics 36(3): 189-201 (2003)
	2001
2	EE	Hongfang Liu, Yves A. Lussier, Carol Friedman: Disambiguating Ambiguous Biomedical Terms in Biomedical Narrative Text: An Unsupervised Method. Journal of Biomedical Informatics 34(4): 249-261 (2001)
	1999
1	EE	Hongfang Liu, D. Frank Hsu, S. Horiguchi: Generalized shuffle-exchange digraphs: Hamiltonian properties. ISCAS (6) 1999: 157-160

Coauthor Index

1	Cecilia N. Arighi	[22] [35]
2	Alan R. Aronson	[6] [14]
3	Winona C. Barker	[22] [35]
4	Ionut Bebu	[29] [33]
5	Judith A. Blake	[7] [22] [35]
6	Stuart Brown	[9]
7	Malte Buchholz	[31]
8	Natasha J. Caplen	[32]
9	Ti-Cheng Chang	[22]
10	Elizabeth S. Chen	[16]
11	Fang-An Chen	[8]
12	Lifeng Chen	[7] [11]
13	Han-Yu Chuang	[8] [9]
14	James J. Cimino	[16]
15	James A. Cleland	[32]
16	Dina Demner-Fushman	[6] [14]
17	Harold J. Drabkin	[35]
18	Khaled El Emam	[30] [34]
19	Alessandro Ferrucci	[20]
20	Carol Friedman	[2] [3] [4] [7] [11] [16]
21	Thomas M. Gress	[31]
22	Vincent Hermoso	[5]
23	S. Horiguchi	[1]
24	George Hripcsak	[16]
25	D. Frank Hsu	[1] [8] [9]
26	Zhang-Zhi Hu	[5] [12] [15] [17] [22] [23] [28]
27	Susanne M. Humphrey	[6] [14]
28	Nicholas C. Ide	[6]
29	D. Curtis Jamison	[21]
30	Ari B. Kahn	[20] [21] [32]
31	David W. Kane	[20] [31]
32	Cheng-Yan Kao	[8] [9]
33	Hans A. Kestler	[31]
34	Won Kim	[6]
35	Akif Günes Koru (Gunes Koru)	[10] [13] [19] [20] [25] [27] [30] [34] [36]
36	Johann M. Kraus	[31]
37	Jimmy J. Lin	[14]
38	Russell R. Loane	[6]
39	Yves A. Lussier	[2] [16]
40	Inderjeet Mani	[5]
41	Divya Mathew	[30]
42	Cameron McMunn-Coffran	[9]
43	James G. Mork	[6]
44	André Müller	[31]
45	Peter J. Munson	[20]
46	Darren A. Natale	[22] [35]
47	Antej Nuhanovic	[20]
48	Gang Qu	[20]
49	William C. Reinhold	[20]
50	Patrick Ruch	[14]
51	Miguel E. Ruiz	[14] [24]
52	Michael C. Ryan	[20] [21] [32]
53	Carolyn B. Seaman	[36]
54	Françoise Seillier-Moiseiwitsch	[29] [33]
55	Lyudmila Shagina	[3]
56	Barry Smith	[22] [35]
57	Lawrence H. Smith	[6] [14]
58	Min Song	[23]
59	Ying Sun	[24]
60	Lorraine K. Tanabe	[6] [14]
61	Ying Tao	[16]
62	Manabu Torii	[18] [23] [26] [28]
63	Olivia Tuason	[7]
64	Medha Umarji	[36]
65	Jianqiang Wang	[24]
66	John N. Weinstein	[20] [21] [31] [32]
67	W. John Wilbur	[6] [14]
68	Cathy H. Wu	[5] [12] [15] [17] [22] [23] [28] [35]
69	Natalie Xie	[6]
70	Barry Zeeberg	[20] [21] [31] [32]
71	Dongsong Zhang	[25] [27] [30] [34]
72	Jian Zhang	[17]
73	Li Zhou	[16]

Colors in the list of coauthors