Yixue Li Vis

Yi-Xue Li

*	2009
37	EE	Zhen Wang, Guohui Ding, Zhong-Hao Yu, Lei Liu, Yixue Li: CHSMiner: a GUI tool to identify chromosomal homologous segments. Algorithms for Molecular Biology 4: (2009)
36	EE	Pei Hao, SiYuan Zheng, Jie Ping, Kang Tu, Christian Gieger, Rui Wang-Sattler, Yang Zhong, Yixue Li: Human gene expression sensitivity according to large scale meta-analysis. BMC Bioinformatics 10(S-1): (2009)
35	EE	Hong Li, Guohui Ding, Lu Xie, Yixue Li: PAnnBuilder: an R package for assembling proteomic annotation data. Bioinformatics 25(8): 1094-1095 (2009)
34	EE	Guohui Ding, Peter Lorenz, Michael Kreutzer, Yixue Li, Hans-Jürgen Thiesen: SysZNF: the C2H2 zinc finger gene database. Nucleic Acids Research 37(Database-Issue): 267-273 (2009)
33	EE	Su-Jun Li, Mao Peng, Hong Li, Bo-Shu Liu, Chuan Wang, Jia-Rui Wu, Yi-Xue Li, Rong Zeng: Sys-BodyFluid: a systematical database for human body fluid proteome research. Nucleic Acids Research 37(Database-Issue): 907-912 (2009)
32	EE	Hong Xi, Jongsun Park, Guohui Ding, Yong-Hwan Lee, Yixue Li: SysPIMP: the web-based systematical platform for identifying human disease-related mutated sequences from mass spectrometry. Nucleic Acids Research 37(Database-Issue): 913-920 (2009)
	2008
31	EE	Yong Fuga Li, Randy J. Arnold, Yixue Li, Predrag Radivojac, Quanhu Sheng, Haixu Tang: A Bayesian Approach to Protein Inference Problem in Shotgun Proteomics. RECOMB 2008: 167-180
30	EE	Qingwei Xu, Yixiang Shi, Qiang Lu, Guo-qing Zhang, Qing-ming Luo, Yixue Li: GORouter: an RDF model for providing semantic query and inference services for Gene Ontology and its associations. BMC Bioinformatics 9(S-1): (2008)
29	EE	Xiaojing Wang, Di Wu, SiYuan Zheng, Jing Sun, Lin Tao, Yixue Li, Zhi-Wei Cao: Ab-origin: an enhanced tool to identify the sourcing gene segments in germline for rearranged antibodies. BMC Bioinformatics 9(S-12): (2008)
28	EE	Guangyong Zheng, Ziliang Qian, Qing Yang, Chaochun Wei, Lu Xie, Yangyong Zhu, Yixue Li: The combination approach of SVM and ECOC for powerful identification and classification of transcription factor. BMC Bioinformatics 9: (2008)
27	EE	Pedro Alves, Randy J. Arnold, David E. Clemmer, Yixue Li, James P. Reilly, Quanhu Sheng, Haixu Tang, Zhiyin Xun, Rong Zeng, Predrag Radivojac: Fast and accurate identification of semi-tryptic peptides in shotgun proteomics. Bioinformatics 24(1): 102-109 (2008)
26	EE	SiYuan Zheng, Jia Sheng, Chuan Wang, Xiaojing Wang, Yao Yu, Yun Li, Alex Michie, Jianliang Dai, Yang Zhong, Pei Hao, Lei Liu, Yixue Li: MPSQ: a web tool for protein-state searching. Bioinformatics 24(20): 2412-2413 (2008)
25	EE	Guangyong Zheng, Kang Tu, Qing Yang, Yun Xiong, Chaochun Wei, Lu Xie, Yangyong Zhu, Yixue Li: ITFP: an integrated platform of mammalian transcription factors. Bioinformatics 24(20): 2416-2417 (2008)
24	EE	Guohui Ding, Yan Sun, Hong Li, Zhen Wang, Haiwei Fan, Chuan Wang, Dan Yang, Yixue Li: EPGD: a comprehensive web resource for integrating and displaying eukaryotic paralog/paralogon information. Nucleic Acids Research 36(Database-Issue): 255-262 (2008)
23	EE	Jian Cui, Peng Li, Guang Li, Feng Xu, Chen Zhao, Yuhua Li, Zhongnan Yang, Guang Wang, Qingbo Yu, Yi-Xue Li, Tieliu Shi: AtPID: Arabidopsis thaliana protein interactome database - an integrative platform for plant systems biology. Nucleic Acids Research 36(Database-Issue): 999-1008 (2008)
	2007
22	EE	Yixue Li: Biological data integration and high-performance computing. China HPC 2007: 51-61
21	EE	Xiaojing Wang, Wu Wei, SiYuan Zheng, Zhi-Wei Cao, Yixue Li: Ab-origin: An Improved Tool of Heavy Chain Rearrangement Analysis for Human Immunoglobulin. International Conference on Computational Science (2) 2007: 363-369
20	EE	Jingchun Sun, Yan Sun, Guohui Ding, Qi Liu, Chuan Wang, Youyu He, Tieliu Shi, Yixue Li, Zhongming Zhao: InPrePPI: an integrated evaluation method based on genomic context for predicting protein-protein interactions in prokaryotic genomes. BMC Bioinformatics 8: (2007)
19	EE	Jing Zhao, Guohui Ding, Lin Tao, Hong Yu, Zhong-Hao Yu, Jianhua Luo, Zhi-Wei Cao, Yi-Xue Li: Modular co-evolution of metabolic networks. BMC Bioinformatics 8: (2007)
18	EE	Hui Yu, Feng Wang, Kang Tu, Lu Xie, Yuan-Yuan Li, Yi-Xue Li: Transcript-level annotation of Affymetrix probesets improves the interpretation of gene expression data. BMC Bioinformatics 8: (2007)
17	EE	Ziliang Qian, Lingyi Lu, Xiao-Jun Liu, Yu-Dong Cai, Yixue Li: An approach to predict transcription factor DNA binding site specificity based upon gene and transcription factor functional categorization. Bioinformatics 23(18): 2449-2454 (2007)
16	EE	Lingyi Lu, Ziliang Qian, Yu-Dong Cai, Yixue Li: ECS: An automatic enzyme classifier based on functional domain composition. Computational Biology and Chemistry 31(3): 226-232 (2007)
	2006
15	EE	Zhuo Wang, Xin-Guang Zhu, Yazhu Chen, Yi-Xue Li, Lei Liu: Comparison of Modularization Methods in Application to Different Biological Networks. VDMB 2006: 185-195
14	EE	Yuan-Yuan Li, Lei Qin, Zong-Ming Guo, Lei Liu, Hao Xu, Pei Hao, Jiong Su, Yixiang Shi, Wei-Zhong He, Yi-Xue Li: In silico discovery of human natural antisense transcripts. BMC Bioinformatics 7: 18 (2006)
13	EE	Xiaojing Yu, Chuan Wang, Yixue Li: Classification of protein quaternary structure by functional domain composition. BMC Bioinformatics 7: 187 (2006)
12	EE	Sujun Li, Boshu Liu, Rong Zeng, Yu-Dong Cai, Yixue Li: Predicting O-glycosylation sites in mammalian proteins by using SVMs. Computational Biology and Chemistry 30(3): 203-208 (2006)
11	EE	Guo-qing Zhang, Zhi-Wei Cao, Qing-ming Luo, Yu-Dong Cai, Yixue Li: Operon prediction based on SVM. Computational Biology and Chemistry 30(3): 233-240 (2006)
10	EE	Xing-Ming Zhao, Ji-Xiang Du, Hong-Qiang Wang, Yunping Zhu, Yixue Li: A new technique for selecting features from protein sequences. IJPRAI 20(2): 271-283 (2006)
9	EE	Chun-Hou Zheng, Yan Chen, Xiu-Xia Li, Yi-Xue Li, Yun-Ping Zhu: Tumor classification based on independent component analysis. IJPRAI 20(2): 297-310 (2006)
8	EE	Zhuo Fang, Jiong Yang, Yixue Li, Qing-ming Luo, Lei Liu: Knowledge guided analysis of microarray data. Journal of Biomedical Informatics: 401-411 (2006)
7	EE	Qiang Lu, Pei Hao, Vasa Curcin, Wei-Zhong He, Yuan-Yuan Li, Qing-ming Luo, Yike Guo, Yi-Xue Li: KDE Bioscience: Platform for bioinformatics analysis workflows. Journal of Biomedical Informatics: 440-450 (2006)
	2005
6	EE	Jingchun Sun, Jinlin Xu, Zhen Liu, Qi Liu, Aimin Zhao, Tieliu Shi, Yi-Xue Li: Refined phylogenetic profiles method for predicting protein-protein interactions. Bioinformatics 21(16): 3409-3415 (2005)
5	EE	Pei Hao, Wei-Zhong He, Yin Huang, Liang-Xiao Ma, Ying Xu, Hong Xi, Chuan Wang, Bo-Shu Liu, Jin-Miao Wang, Yi-Xue Li, Yang Zhong: MPSS: an integrated database system for surveying a set of proteins. Bioinformatics 21(9): 2142-2143 (2005)
4	EE	Guang-Zheng Zhang, De-Shuang Huang, Yun-Ping Zhu, Yi-Xue Li: Improving protein secondary structure prediction by using the residue conformational classes. Pattern Recognition Letters 26(15): 2346-2352 (2005)
	2004
3	EE	Yong Deng, Qi Liu, Yi-Xue Li: Scoring hidden Markov models to discriminate -barrel membrane proteins. Computational Biology and Chemistry 28(3): 189-194 (2004)
	2003
2	EE	Qi Liu, Yi-Sheng Zhu, Baohua Wang, Yi-Xue Li: A HMM-based method to predict the transmembrane regions of \beta-barrel membrane proteins. Computational Biology and Chemistry 27(1): 69-76 (2003)
1	EE	Qi Liu, Yi-Sheng Zhu, Baohua Wang, Yi-Xue Li: Identification of -barrel membrane proteins based on amino acid composition properties and predicted secondary structure. Computational Biology and Chemistry 27(3): 355-361 (2003)

Coauthor Index

1	Pedro Alves	[27]
2	Randy J. Arnold	[27] [31]
3	Yu-Dong Cai	[11] [12] [16] [17]
4	Zhi-Wei Cao	[11] [19] [21] [29]
5	Yan Chen	[9]
6	Yazhu Chen	[15]
7	David E. Clemmer	[27]
8	Jian Cui	[23]
9	Vasa Curcin	[7]
10	Jianliang Dai	[26]
11	Yong Deng	[3]
12	Guohui Ding	[19] [20] [24] [32] [34] [35] [37]
13	Ji-Xiang Du	[10]
14	Haiwei Fan	[24]
15	Zhuo Fang	[8]
16	Christian Gieger	[36]
17	Yike Guo	[7]
18	Zong-Ming Guo	[14]
19	Pei Hao	[5] [7] [14] [26] [36]
20	Wei-Zhong He	[5] [7] [14]
21	Youyu He	[20]
22	De-Shuang Huang (Deshuang Huang)	[4]
23	Yin Huang	[5]
24	Michael Kreutzer	[34]
25	Yong-Hwan Lee	[32]
26	Guang Li	[23]
27	Hong Li	[24] [33] [35]
28	Peng Li	[23]
29	Su-Jun Li	[33]
30	Sujun Li	[12]
31	Xiu-Xia Li	[9]
32	Yong Fuga Li	[31]
33	Yuan-Yuan Li	[7] [14] [18]
34	Yuhua Li	[23]
35	Yun Li	[26]
36	Bo-Shu Liu	[5] [33]
37	Boshu Liu	[12]
38	Lei Liu	[8] [14] [15] [26] [37]
39	Qi Liu	[1] [2] [3] [6] [20]
40	Xiao-Jun Liu	[17]
41	Zhen Liu	[6]
42	Peter Lorenz	[34]
43	Lingyi Lu	[16] [17]
44	Qiang Lu	[7] [30]
45	Jianhua Luo	[19]
46	Qing-ming Luo	[7] [8] [11] [30]
47	Liang-Xiao Ma	[5]
48	Alex Michie	[26]
49	Jongsun Park	[32]
50	Mao Peng	[33]
51	Jie Ping	[36]
52	Ziliang Qian	[16] [17] [28]
53	Lei Qin	[14]
54	Predrag Radivojac	[27] [31]
55	James P. Reilly	[27]
56	Jia Sheng	[26]
57	Quanhu Sheng	[27] [31]
58	Tieliu Shi	[6] [20] [23]
59	Yixiang Shi	[14] [30]
60	Jiong Su	[14]
61	Jing Sun	[29]
62	Jingchun Sun	[6] [20]
63	Yan Lindsay Sun (Yan Sun)	[20] [24]
64	Haixu Tang	[27] [31]
65	Lin Tao	[19] [29]
66	Hans-Jürgen Thiesen	[34]
67	Kang Tu	[18] [25] [36]
68	Baohua Wang	[1] [2]
69	Chuan Wang	[5] [13] [20] [24] [26] [33]
70	Feng Wang	[18]
71	Guang Wang	[23]
72	Hong-Qiang Wang	[10]
73	Jin-Miao Wang	[5]
74	Xiaojing Wang	[21] [26] [29]
75	Zhen Wang	[24] [37]
76	Zhuo Wang	[15]
77	Rui Wang-Sattler	[36]
78	Chaochun Wei	[25] [28]
79	Wu Wei	[21]
80	Di Wu	[29]
81	Jia-Rui Wu	[33]
82	Hong Xi	[5] [32]
83	Lu Xie	[18] [25] [28] [35]
84	Yun Xiong	[25]
85	Feng Xu	[23]
86	Hao Xu	[14]
87	Jinlin Xu	[6]
88	Qingwei Xu	[30]
89	Ying Xu	[5]
90	Zhiyin Xun	[27]
91	Dan Yang	[24]
92	Jiong Yang	[8]
93	Qing Yang	[25] [28]
94	Zhongnan Yang	[23]
95	Hong Yu	[19]
96	Hui Yu	[18]
97	Qingbo Yu	[23]
98	Xiaojing Yu	[13]
99	Yao Yu	[26]
100	Zhong-Hao Yu	[19] [37]
101	Rong Zeng	[12] [27] [33]
102	Guang-Zheng Zhang	[4]
103	Guo-qing Zhang	[11] [30]
104	Aimin Zhao	[6]
105	Chen Zhao	[23]
106	Jing Zhao	[19]
107	Xing-Ming Zhao	[10]
108	Zhongming Zhao	[20]
109	Chun-Hou Zheng (Chunhou Zheng)	[9]
110	Guangyong Zheng	[25] [28]
111	SiYuan Zheng	[21] [26] [29] [36]
112	Yang Zhong	[5] [26] [36]
113	Xin-Guang Zhu	[15]
114	Yangyong Zhu	[25] [28]
115	Yi-Sheng Zhu	[1] [2]
116	Yun-Ping Zhu	[4] [9]
117	Yunping Zhu	[10]

Colors in the list of coauthors