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Stefan Kurtz Vis

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*2009
31EESascha Steinbiss, Gordon Gremme, Christin Schärfer, Malte Mader, Stefan Kurtz: AnnotationSketch: a genome annotation drawing library. Bioinformatics 25(4): 533-534 (2009)
2008
30EEDavid Ellinghaus, Stefan Kurtz, Ute Willhoeft: LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons. BMC Bioinformatics 9: (2008)
29EEMohamed Ibrahim Abouelhoda, Stefan Kurtz, Enno Ohlebusch: CoCoNUT: an efficient system for the comparison and analysis of genomes. BMC Bioinformatics 9: (2008)
28EEJulia Herold, Stefan Kurtz, Robert Giegerich: Efficient computation of absent words in genomic sequences. BMC Bioinformatics 9: (2008)
27EEEnno Ohlebusch, Stefan Kurtz: Space Efficient Computation of Rare Maximal Exact Matches between Multiple Sequences. Journal of Computational Biology 15(4): 357-377 (2008)
2007
26EEStefan Gräf, Fiona G. G. Nielsen, Stefan Kurtz, Martijn A. Huynen, Ewan Birney, Henk Stunnenberg, Paul Flicek: Optimized design and assessment of whole genome tiling arrays. ISMB/ECCB (Supplement of Bioinformatics) 2007: 195-204
25EEFiona G. G. Nielsen, Stefan Gräf, Xinmin Zhang, Stefan Kurtz, Sergei Denissov, Roland Green, Ewan Birney, Paul Flicek, Martijn A. Huynen, Henk Stunnenberg: Optimising oligonucleotide array design for ChIP-on-chip. BMC Bioinformatics 8(S-8): (2007)
2005
24 Andrew E. Torda, Stefan Kurtz, Matthias Rarey: Proceedings of the German Conference on Bioinformatics (GCB 2005), Hamburg, Germany, October 5-7, 2005 GI 2005
23EEGordon Gremme, Volker Brendel, Michael E. Sparks, Stefan Kurtz: Engineering a software tool for gene structure prediction in higher organisms. Information & Software Technology 47(15): 965-978 (2005)
2004
22 Michael Beckstette, Dirk Strothmann, Robert Homann, Robert Giegerich, Stefan Kurtz: PoSSuMsearch: Fast and Sensitive Matching of Position Specific Scoring Matrices using Enhanced Suffix Arrays. German Conference on Bioinformatics 2004: 53-64
21EEJomuna V. Choudhuri, Chris Schleiermacher, Stefan Kurtz, Robert Giegerich: GenAlyzer: interactive visualization of sequence similarities between entire genomes. Bioinformatics 20(12): 1964-1965 (2004)
20EEMohamed Ibrahim Abouelhoda, Stefan Kurtz, Enno Ohlebusch: Replacing suffix trees with enhanced suffix arrays. J. Discrete Algorithms 2(1): 53-86 (2004)
19 Jan Krüger, Alexander Sczyrba, Stefan Kurtz, Robert Giegerich: e2g: an interactive web-based server for efficiently mapping large EST and cDNA sets to genomic sequences. Nucleic Acids Research 32(Web-Server-Issue): 301-304 (2004)
2003
18EEMatthias Höchsmann, Thomas Töller, Robert Giegerich, Stefan Kurtz: Local Similarity in RNA Secondary Structures. CSB 2003: 159-168
17 Patrick Chain, Stefan Kurtz, Enno Ohlebusch, Tom Slezak: An Applications-focused Review of Comparative Genomics Tools: Capabilities, Limitations and Future Challenges. Briefings in Bioinformatics 4(2): 105-123 (2003)
16 Alexander Sczyrba, Jan Krüger, Henning Mersch, Stefan Kurtz, Robert Giegerich: RNA-related tools on the Bielefeld Bioinformatics Server. Nucleic Acids Research 31(13): 3767-3770 (2003)
15EERobert Giegerich, Stefan Kurtz, Jens Stoye: Efficient implementation of lazy suffix trees. Softw., Pract. Exper. 33(11): 1035-1049 (2003)
2002
14 Michael Höhl, Stefan Kurtz, Enno Ohlebusch: Efficient multiple genome alignment. ISMB 2002: 312-320
13EEMohamed Ibrahim Abouelhoda, Enno Ohlebusch, Stefan Kurtz: Optimal Exact Strring Matching Based on Suffix Arrays. SPIRE 2002: 31-43
12EEMohamed Ibrahim Abouelhoda, Stefan Kurtz, Enno Ohlebusch: The Enhanced Suffix Array and Its Applications to Genome Analysis. WABI 2002: 449-463
2001
11 Stefan Gräf, Dirk Strothmann, Stefan Kurtz, Gerhard Steger: HyPaLib: a database of RNAs and RNA structural elements defined by hybrid patterns. Nucleic Acids Research 29(1): 196-198 (2001)
2000
10 Stefan Kurtz, Enno Ohlebusch, Chris Schleiermacher, Jens Stoye, Robert Giegerich: Computation and Visualization of Degenerate Repeats in Complete Genomes. ISMB 2000: 228-238
9EEBernhard Balkenhol, Stefan Kurtz: Universal Data Compression Based on the Burrows-Wheeler Transformation: Theory and Practice. IEEE Trans. Computers 49(10): 1043-1053 (2000)
1999
8EERobert Giegerich, Stefan Kurtz, Jens Stoye: Efficient Implementation of Lazy Suffix Trees. Algorithm Engineering 1999: 30-42
7EEBernhard Balkenhol, Stefan Kurtz, Yuri M. Shtarkov: Modifications of the Burrows and Wheeler Data Compression Algorithm. Data Compression Conference 1999: 188-197
6 Stefan Kurtz, Chris Schleiermacher: REPuter: fast computation of maximal repeats in complete genomes. Bioinformatics 15(5): 426-427 (1999)
5 Stefan Kurtz: Reducing the space requirement of suffix trees. Softw., Pract. Exper. 29(13): 1149-1171 (1999)
1997
4 Stefan Kurtz, Gene Myers: Estimating the Probability of Approximate Matches. CPM 1997: 52-64
3 Robert Giegerich, Stefan Kurtz: From Ukkonen to McCreight and Weiner: A Unifying View of Linear-Time Suffix Tree Construction. Algorithmica 19(3): 331-353 (1997)
1995
2 Robert Giegerich, Stefan Kurtz: A Comparison of Imperative and Purely Functional Suffix Tree Constructions. Sci. Comput. Program. 25(2-3): 187-218 (1995)
1994
1EERobert Giegerich, Stefan Kurtz: Suffix Trees in the Functional Programming Paradigm. ESOP 1994: 225-240

Coauthor Index

1Mohamed Ibrahim Abouelhoda [12] [13] [20] [29]
2Bernhard Balkenhol [7] [9]
3Michael Beckstette [22]
4Ewan Birney [25] [26]
5Volker Brendel [23]
6Patrick Chain [17]
7Jomuna V. Choudhuri [21]
8Sergei Denissov [25]
9David Ellinghaus [30]
10Paul Flicek [25] [26]
11Robert Giegerich [1] [2] [3] [8] [10] [15] [16] [18] [19] [21] [22] [28]
12Stefan Gräf [11] [25] [26]
13Roland Green [25]
14Gordon Gremme [23] [31]
15Julia Herold [28]
16Matthias Höchsmann [18]
17Michael Höhl [14]
18Robert Homann [22]
19Martijn A. Huynen [25] [26]
20Jan Krüger [16] [19]
21Malte Mader [31]
22Henning Mersch [16]
23Eugene W. Myers (Gene Myers) [4]
24Fiona G. G. Nielsen [25] [26]
25Enno Ohlebusch [10] [12] [13] [14] [17] [20] [27] [29]
26Matthias Rarey [24]
27Christin Schärfer [31]
28Chris Schleiermacher [6] [10] [21]
29Alexander Sczyrba [16] [19]
30Yuri M. Shtarkov [7]
31Tom Slezak [17]
32Michael E. Sparks [23]
33Gerhard Steger [11]
34Sascha Steinbiss [31]
35Jens Stoye [8] [10] [15]
36Dirk Strothmann [11] [22]
37Henk Stunnenberg [25] [26]
38Thomas Töller [18]
39Andrew E. Torda [24]
40Ute Willhoeft [30]
41Xinmin Zhang [25]

Colors in the list of coauthors

Copyright © Tue Nov 3 08:52:44 2009 by Michael Ley (ley@uni-trier.de)