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Akihiko Konagaya Vis

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*2008
68EETakeshi Arikuma, Sumi Yoshikawa, Ryuzo Azuma, Kentaro Watanabe, Kazumi Matsumura, Akihiko Konagaya: Drug interaction prediction using ontology-driven hypothetical assertion framework for pathway generation followed by numerical simulation. BMC Bioinformatics 9(S-6): (2008)
67EEChun-Hsi Huang, Akihiko Konagaya, Vincenzo Lanza, Peter M. A. Sloot: Guest Editorial Introduction to the Special Section on BioGrid: Biomedical Computations on the Grid. IEEE Transactions on Information Technology in Biomedicine 12(2): 133-137 (2008)
2007
66EEHiroshi Kobayashi, Ryuzo Azuma, Akihiko Konagaya: Kinetic Analysis of Ligand-Receptor Complex Formation with the Aid of Computer Simulation. AINA Workshops (1) 2007: 727-732
65EEFumikazu Konishi, Manabu Ishii, Shingo Ohki, Ryo Umetsu, Akihiko Konagaya: RABC: A Conceptual Design of Pervasive Infrastructure for Browser Computing based on Ajax technologies. CCGRID 2007: 661-672
64EEYoshiki Yamaguchi, Tsutomu Maruyama, Fumikazu Konishi, Akihiko Konagaya: High speed tablation system using an FPGA designed for distribution tables of frequent DNA subsequences. FPL 2007: 145-150
63EEShingo Masuno, Tsutomu Maruyama, Yoshiki Yamaguchi, Akihiko Konagaya: An FPGA Implementation of Multiple Sequence Alignment Based on Carrillo-Lipman Method. FPL 2007: 489-492
62EETakeshi Arikuma, Sumi Yoshikawa, Kentaro Watanabe, Akihiko Konagaya: Ontology-Driven Hypothetic Assertion (OHA) for Drug Interaction Prediction. IMSCCS 2007: 1-8
61EEShingo Masuno, Tsutomu Maruyama, Yoshiki Yamaguchi, Akihiko Konagaya: Multiple Sequence Alignment Based on Dynamic Programming Using FPGA. IEICE Transactions 90-D(12): 1939-1946 (2007)
60EEAkihiko Konagaya, Richard O. Sinnott, Peter W. Arzberger: Life Science Grid. New Generation Comput. 25(4): 337-338 (2007)
59EERyuzo Azuma, Ryo Umetsu, Shingo Ohki, Fumikazu Konishi, Sumi Yoshikawa, Akihiko Konagaya, Kazumi Matsumura: Discovering Dynamic Characteristics of Biochemical Pathways using Geometric Patterns among Parameter-Parameter Dependencies in Differential Equations. New Generation Comput. 25(4): 425-441 (2007)
58EEYoshiki Yamaguchi, Tsutomu Maruyama, Ryuzo Azuma, Moritoshi Yasunaga, Akihiko Konagaya: Mesoscopic-level Simulation of Dynamics and Interactions of Biological Molecules Using Monte Carlo Simulation. VLSI Signal Processing 48(3): 287-299 (2007)
2006
57EEAkihiko Konagaya: OBIGrid: Towards the 'Ba' for Sharing Resources, Services and Knowledge for Bioinformatics. CCGRID 2006: 37
56EEMitsuhiro Okada, Yutaro Sugimoto, Sumi Yoshikawa, Akihiko Konagaya: Drug Interaction Ontology (DIO) and the Resource-Sensitive Logical Inferences. Essays Dedicated to Joseph A. Goguen 2006: 616-642
55EECraig A. Stewart, Michael Schroeder, Concettina Guerra, Akihiko Konagaya: Topic 17: High-Performance Bioinformatics. Euro-Par 2006: 1125-1126
54EEShingo Masuno, Tsutomu Maruyama, Yoshiki Yamaguchi, Akihiko Konagaya: Multidimensional Dynamic Programming for Homology Search on Distributed Systems. Euro-Par 2006: 1127-1137
53EEFumikazu Konishi, Manabu Ishii, Shingo Ohki, Yusuke Hamano, Shuichi Fukuda, Akihiko Konagaya: Improving the Research Environment of High Performance Computing for Non-cluster Experts Based on Knoppix Instant Computing Technology. Euro-Par 2006: 1169-1178
52EERyuzo Azuma, Tetsuji Kitagawa, Hiroshi Kobayashi, Akihiko Konagaya: Particle Simulation Approach for Sub-cellular Dynamics and Interactions of Biological Molecules. IMSCCS (1) 2006: 150-157
51EERyuzo Azuma, Tetsuji Kitagawa, Hiroshi Kobayashi, Akihiko Konagaya: Particle simulation approach for subcellular dynamics and interactions of biological molecules. BMC Bioinformatics 7(S-4): (2006)
50EEShigeru Takasaki, Yoshihiro Kawamura, Akihiko Konagaya: Selecting effective siRNA sequences by using radial basis function network and decision tree learning. BMC Bioinformatics 7(S-5): (2006)
49EEAkihiko Konagaya: Trends in life science grid: from computing grid to knowledge grid. BMC Bioinformatics 7(S-5): (2006)
48EEShigeru Takasaki, Yoshihiro Kawamura, Akihiko Konagaya: Selecting effective siRNA sequences based on the self-organizing map and statistical techniques. Computational Biology and Chemistry 30(3): 169-178 (2006)
2005
47 Akihiko Konagaya, Kenji Satou: Grid Computing in Life Science, First International Workshop on Life Science Grid, LSGRID 2004, Kanazawa, Japan, May 31 - June 1, 2004, Revised Selected andInvited Papers Springer 2005
46 Shingo Masuno, Tsutomu Maruyama, Yoshiki Yamaguchi, Akihiko Konagaya: Multidimensional Dynamic Programming for Homology Search. FPL 2005: 173-178
45 Yoshiki Yamaguchi, Tsutomu Maruyama, Ryuzo Azuma, Akihiko Konagaya: Spatiotemporal Simulation of a Single Living Cell. FPT 2005: 267-274
44EEAki Hasegawa, Kazumi Kuriyama-Matsumura, Xiaomei Yu, Mariko Hatakeyama, Akihiko Konagaya: Software-Aided Mass Spectrometry Analysis for Identification of Protein-Protein Interaction in Signal Transduction Pathways. ICDE Workshops 2005: 1157
43EEShuhei Kimura, Kaori Ide, Aiko Kashihara, Makoto Kano, Mariko Hatakeyama, Ryoji Masui, Noriko Nakagawa, Shigeyuki Yokoyama, Seiki Kuramitsu, Akihiko Konagaya: Inference of S-system models of genetic networks using a cooperative coevolutionary algorithm. Bioinformatics 21(7): 1154-1163 (2005)
42EEEli Kaminuma, Naohiko Heida, Yuko Tsumoto, Miki Nakazawa, Nobuharu Goto, Akihiko Konagaya, Minami Matsui, Tetsuro Toyoda: Three-dimensional Definition of Leaf Morphological Traits of arabidopsis in Silico Phenotypic Analysis. J. Bioinformatics and Computational Biology 3(2): 401-414 (2005)
41EETetsuya Sakurai, Masakazu Satou, Kenji Akiyama, Kei Iida, Motoaki Seki, Takashi Kuromori, Takuya Ito, Akihiko Konagaya, Tetsuro Toyoda, Kazuo Shinozaki: RARGE: a large-scale database of RIKEN Arabidopsis resources ranging from transcriptome to phenome. Nucleic Acids Research 33(Database-Issue): 647-650 (2005)
2004
40EEYoshiki Yamaguchi, Tsutomu Maruyama, Akihiko Konagaya: Three-Dimensional Dynamic Programming for Homology Search. FPL 2004: 505-515
39EENaohiko Heida, Yoshikazu Hasegawa, Yoshiki Mochizuki, Katsura Hirosawa, Akihiko Konagaya, Tetsuro Toyoda: TraitMap: an XML-based genetic-map database combining multigenic loci and biomolecular networks. ISMB/ECCB (Supplement of Bioinformatics) 2004: 152-160
38EEFumikazu Konishi, Akihiko Konagaya: The Architectural Design of High-Throughput BLAST Services on OBIGrid. LSGRID 2004: 32-42
37EEKenji Satou, Yasuhiko Nakashima, Shin'ichi Tsuji, Xavier Défago, Akihiko Konagaya: An Integrated System for Distributed Bioinformatics Environment on Grids. LSGRID 2004: 8-19
36EEAkinobu Fukuzaki, Takeshi Nagashima, Kaori Ide, Fumikazu Konishi, Mariko Hatakeyama, Shigeyuki Yokoyama, Seiki Kuramitsu, Akihiko Konagaya: Genome-Wide Functional Annotation Environment forin OBIGrid. LSGRID 2004: 82-91
35 Shouji Tatsumoto, Kenji Satou, Akihiko Konagaya: Prediction of Protein Secondary Structure from PDB Structure Information Based on Sequence Segments Homology Searching. METMBS 2004: 250-255
34 Tetsuo Shibuya, Hisashi Kashima, Akihiko Konagaya: Efficient filtering methods for clustering cDNAs with spliced sequence alignment. Bioinformatics 20(1): 29-39 (2004)
33EEShuhei Kimura, Takuji Kawasaki, Mariko Hatakeyama, Takashi Naka, Fumikazu Konishi, Akihiko Konagaya: OBIYagns: a grid-based biochemical simulator with a parameter estimator. Bioinformatics 20(10): 1646-1648 (2004)
32EEKaoru Yamamoto, Taku Kudo, Akihiko Konagaya, Yuji Matsumoto: Use of morphological analysis in protein name recognition. Journal of Biomedical Informatics 37(6): 471-482 (2004)
31EEPeter W. Arzberger, Abbas Farazdel, Akihiko Konagaya, Larry Ang, Shinji Shimojo, Rick L. Stevens: Life Sciences and Cyberinfrastructure: Dual and Interacting Revolutions that will Drive Future Science. New Generation Comput. 22(2): (2004)
30EEAkihiko Konagaya, Fumikazu Konishi, Mariko Hatakeyama, Kenji Satou: The Superstructure toward Open Bioinformatics Grid. New Generation Comput. 22(2): (2004)
29 Takeshi Nagashima, Hideo Matsuda, Diego G. Silva, Nikolai Petrovsky, Akihiko Konagaya, Christian Schönbach: FREP: a database of functional repeats in mouse cDNAs. Nucleic Acids Research 32(Database-Issue): 471-475 (2004)
2003
28EEJunko Hosaka, Judice L. Y. Koh, Akihiko Konagaya: Effect of utilizing terminology on extraction of protein-protein interaction information from biomedical literature. EACL 2003: 107-110
27EEShuhei Kimura, Mariko Hatakeyama, Akihiko Konagaya: Inference of S-system models of genetic networks using a genetic local search. IEEE Congress on Evolutionary Computation (1) 2003: 631-638
26 Shouji Tatsumoto, Kenji Satou, Akihiko Konagaya, Jun'ichi Kurita, Hideto Shimahara, Shin-ichi Tate: Development of Support Tool for NMR Spectrum Analysis. METMBS 2003: 159-164
25 Yohei Minakuchi, Kenji Satou, Akihiko Konagaya: Prediction of Protein-Protein Interaction Sites Using Support Vector Machines. METMBS 2003: 22-28
24 Sumi Yoshikawa, Akihiko Konagaya: DIO: Drug Interaction Ontology - Application to Inferences in Possible Drug-Drug Interactions. METMBS 2003: 231-236
23 Makoto Taiji, Tetsu Narumi, Yousuke Ohno, Akihiko Konagaya: MDGRAPE-3: A Petaflops Special-Purpose Computer System for Molecular Dynamics Simulations. PARCO 2003: 669-676
22EEMakoto Taiji, Tetsu Narumi, Yousuke Ohno, Noriyuki Futatsugi, Atsushi Suenaga, Naoki Takada, Akihiko Konagaya: Protein Explorer: A Petaflops Special-Purpose Computer System for Molecular Dynamics Simulations. SC 2003: 15
21 Tetsuro Toyoda, Akihiko Konagaya: KnowledgeEditor: a new tool for interactive modeling and analyzing biological pathways based on microarray data. Bioinformatics 19(3): 433-434 (2003)
20 Tetsuro Toyoda, Yoshiki Mochizuki, Akihiko Konagaya: GSCope: a clipped fisheye viewer effective for highly complicated biomolecular network graphs. Bioinformatics 19(3): 437-438 (2003)
2002
19EEYoshiki Yamaguchi, Yosuke Miyajima, Tsutomu Maruyama, Akihiko Konagaya: High Speed Homology Search Using Run-Time Reconfiguration. FPL 2002: 281-291
18EEXavier Défago, Akihiko Konagaya: Circle formation for oblivious anonymous mobile robots with no common sense of orientation. POMC 2002: 97-104
17EEYoshiki Yamaguchi, Tsutomu Maruyama, Akihiko Konagaya: High Speed Homology Search with FPGAs. Pacific Symposium on Biocomputing 2002: 271-282
16EEAkihiko Konagaya: OBIGrid: Towards a New Distributed Platform for Bioinformatics. SRDS 2002: 380-
1995
15EEMinoru Asogawa, Yukiko Fujiwara, Akihiko Konagaya: A combination of a functional motif model and a structural motif model for a database validation. HICSS (5) 1995: 174-183
1994
14 Yukiko Fujiwara, Minoru Asogawa, Akihiko Konagaya: Stochastic Motif Extraction Using Hidden Markov Model. ISMB 1994: 121-129
1993
13 Tsutomu Maruyama, Tetsuya Hirose, Akihiko Konagaya: A Fine-Grained Parallel Genetic Algorithm for Distributed Parallel Systems. ICGA 1993: 184-190
12 Hidetoshi Tanaka, Masato Ishikawa, Kiyoshi Asai, Akihiko Konagaya: Hidden Markov Models and Iterative Aligners: Study of Their Equivalence and Possibilities. ISMB 1993: 395-401
1992
11 Akihiko Konagaya: A Stochastic Approach to Genetic Information Processing. ALT 1992: 25-36
10 Koichi Konishi, Tsutomu Maruyama, Akihiko Konagaya, Kaoru Yoshida, Takashi Chikayama: Implementing Streams on Parallel Machines with Distributed Memory. FGCS 1992: 791-798
9 Tsutomu Maruyama, Akihiko Konagaya, Koichi Konishi: An Asynchronous Fine-Grained Parallel Genetic Algorithm. PPSN 1992: 569-578
1991
8 Kenji Yamanishi, Akihiko Konagaya: Learning Stochastic Motifs from Genetic Sequences. ML 1991: 467-471
1990
7 Atsushi Atarashi, Akihiko Konagaya, Shinichi Habata, Minoru Yokota: Implementation and Evaluation of Dynamic Predicates on the Sequential Inference Machine CHI. ICCL 1990: 236-244
1989
6 Akihiko Konagaya, Shinichi Habata, Atsushi Atarashi, Minoru Yokota: Performance Evaluation of a Sequential Inference Machine CHI. NACLP 1989: 1165-1179
1988
5 Hidenori Itoh, Hidetoshi Monoi, Shigeki Shibayama, Nobuyoshi Miyazaki, Haruo Yokota, Akihiko Konagaya: Knowledge Base System in Logic Programming Paradigm. FGCS 1988: 37-53
1987
4 Akihiko Konagaya, Ryosei Nakazaki, Mamoru Umemura: A Co-Operative Programming Environment for a Back-End Type Sequential Inference Machine CHI. Parallel Algorithms and Architectures 1987: 196-205
1985
3 Ryosei Nakazaki, Akihiko Konagaya, Shinichi Habata, Hideo Shimazu, Mamoru Umemura, Masahiro Yamamoto, Minoru Yokota, Takashi Chikayama: Design of a High-speed Prolog Machine (HPM). ISCA 1985: 191-197
1984
2 Tetsuo Ida, Akihiko Konagaya: Comparison of Closure Reduction and Combinatory Reduction Schemes. RIMS Symposia on Software Science and Engineering 1984: 261-291
1 Akihiko Konagaya, Mamoru Umemura: Knowledge Information Processing Language: ShapeUp. New Generation Comput. 2(2): 195-201 (1984)

Coauthor Index

1Kenji Akiyama [41]
2Larry Ang [31]
3Takeshi Arikuma [62] [68]
4Peter W. Arzberger [31] [60]
5Kiyoshi Asai [12]
6Minoru Asogawa [14] [15]
7Atsushi Atarashi [6] [7]
8Ryuzo Azuma [45] [51] [52] [58] [59] [66] [68]
9Takashi Chikayama [3] [10]
10Xavier Défago [18] [37]
11Abbas Farazdel [31]
12Yukiko Fujiwara [14] [15]
13Shuichi Fukuda [53]
14Akinobu Fukuzaki [36]
15Noriyuki Futatsugi [22]
16Nobuharu Goto [42]
17Concettina Guerra [55]
18Shinichi Habata [3] [6] [7]
19Yusuke Hamano [53]
20Aki Hasegawa [44]
21Yoshikazu Hasegawa [39]
22Mariko Hatakeyama [27] [30] [33] [36] [43] [44]
23Naohiko Heida [39] [42]
24Katsura Hirosawa [39]
25Tetsuya Hirose [13]
26Junko Hosaka [28]
27Chun-Hsi Huang [67]
28Tetsuo Ida [2]
29Kaori Ide [36] [43]
30Kei Iida [41]
31Manabu Ishii [53] [65]
32Masato Ishikawa [12]
33Takuya Ito [41]
34Hidenori Itoh [5]
35Eli Kaminuma [42]
36Makoto Kano [43]
37Aiko Kashihara [43]
38Hisashi Kashima [34]
39Yoshihiro Kawamura [48] [50]
40Takuji Kawasaki [33]
41Shuhei Kimura [27] [33] [43]
42Tetsuji Kitagawa [51] [52]
43Hiroshi Kobayashi [51] [52] [66]
44Judice L. Y. Koh [28]
45Fumikazu Konishi [30] [33] [36] [38] [53] [59] [64] [65]
46Koichi Konishi [9] [10]
47Taku Kudo [32]
48Seiki Kuramitsu [36] [43]
49Jun'ichi Kurita [26]
50Kazumi Kuriyama-Matsumura [44]
51Takashi Kuromori [41]
52Vincenzo Lanza [67]
53Tsutomu Maruyama [9] [10] [13] [17] [19] [40] [45] [46] [54] [58] [61] [63] [64]
54Ryoji Masui [43]
55Shingo Masuno [46] [54] [61] [63]
56Hideo Matsuda [29]
57Minami Matsui [42]
58Yuji Matsumoto [32]
59Kazumi Matsumura [59] [68]
60Yohei Minakuchi [25]
61Yosuke Miyajima [19]
62Nobuyoshi Miyazaki [5]
63Yoshiki Mochizuki [20] [39]
64Hidetoshi Monoi [5]
65Takeshi Nagashima [29] [36]
66Takashi Naka [33]
67Noriko Nakagawa [43]
68Yasuhiko Nakashima [37]
69Ryosei Nakazaki [3] [4]
70Miki Nakazawa [42]
71Tetsu Narumi [22] [23]
72Shingo Ohki [53] [59] [65]
73Yousuke Ohno [22] [23]
74Mitsuhiro Okada [56]
75Nikolai Petrovsky [29]
76Tetsuya Sakurai [41]
77Kenji Satou [25] [26] [30] [35] [37] [47]
78Masakazu Satou [41]
79Christian Schönbach [29]
80Michael Schroeder [55]
81Motoaki Seki [41]
82Shigeki Shibayama [5]
83Tetsuo Shibuya [34]
84Hideto Shimahara [26]
85Hideo Shimazu [3]
86Shinji Shimojo [31]
87Kazuo Shinozaki [41]
88Diego G. Silva [29]
89Richard O. Sinnott [60]
90Peter M. A. Sloot [67]
91Rick L. Stevens (Rick Stevens) [31]
92Craig A. Stewart [55]
93Atsushi Suenaga [22]
94Yutaro Sugimoto [56]
95Makoto Taiji [22] [23]
96Naoki Takada [22]
97Shigeru Takasaki [48] [50]
98Hidetoshi Tanaka [12]
99Shin-ichi Tate [26]
100Shouji Tatsumoto [26] [35]
101Tetsuro Toyoda [20] [21] [39] [41] [42]
102Shin'ichi Tsuji [37]
103Yuko Tsumoto [42]
104Mamoru Umemura [1] [3] [4]
105Ryo Umetsu [59] [65]
106Kentaro Watanabe [62] [68]
107Yoshiki Yamaguchi [17] [19] [40] [45] [46] [54] [58] [61] [63] [64]
108Kaoru Yamamoto [32]
109Masahiro Yamamoto [3]
110Kenji Yamanishi [8]
111Moritoshi Yasunaga [58]
112Haruo Yokota [5]
113Minoru Yokota [3] [6] [7]
114Shigeyuki Yokoyama [36] [43]
115Kaoru Yoshida [10]
116Sumi Yoshikawa [24] [56] [59] [62] [68]
117Xiaomei Yu [44]

Colors in the list of coauthors

Copyright © Tue Nov 3 08:52:44 2009 by Michael Ley (ley@uni-trier.de)