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Oliver Kohlbacher Vis

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*2009
48EEErnst Althaus, Gunnar W. Klau, Oliver Kohlbacher, Hans-Peter Lenhof, Knut Reinert: Integer Linear Programming in Computational Biology. Efficient Algorithms 2009: 199-218
47EESebastian J. Schultheiß, Wolfgang Busch, Jan Lohmann, Oliver Kohlbacher, Gunnar Rätsch: KIRMES: kernel-based identification of regulatory modules in euchromatic sequences. Bioinformatics 25(16): 2126-2133 (2009)
46EEMagdalena Feldhahn, Pierre Dönnes, Philipp Thiel, Oliver Kohlbacher: FRED - a framework for T-cell epitope detection. Bioinformatics 25(20): 2758-2759 (2009)
45EENora C. Toussaint, Oliver Kohlbacher: OptiTope - a web server for the selection of an optimal set of peptides for epitope-based vaccines. Nucleic Acids Research 37(Web-Server-Issue): 617-622 (2009)
2008
44 Sebastian J. Schultheiß, Wolfgang Busch, Jan Lohmann, Oliver Kohlbacher, Gunnar Rätsch: KIRMES: Kernel-based Identification of Regulatory Modules in Euchromatic Sequences. German Conference on Bioinformatics 2008: 158-167
43EENico Pfeifer, Oliver Kohlbacher: Multiple Instance Learning Allows MHC Class II Epitope Predictions Across Alleles. WABI 2008: 210-221
42EEAndreas Keller, Christina Backes, Maher Al-Awadhi, Andreas Gerasch, Jan Küntzer, Oliver Kohlbacher, Michael Kaufmann, Hans-Peter Lenhof: GeneTrailExpress: a web-based pipeline for the statistical evaluation of microarray experiments. BMC Bioinformatics 9: (2008)
41EEOle Schulz-Trieglaff, Nico Pfeifer, Clemens Gröpl, Oliver Kohlbacher, Knut Reinert: LC-MSsim - a simulation software for liquid chromatography mass spectrometry data. BMC Bioinformatics 9: (2008)
40EEMarc Sturm, Andreas Bertsch, Clemens Gröpl, Andreas Hildebrandt, Rene Hussong, Eva Lange, Nico Pfeifer, Ole Schulz-Trieglaff, Alexandra Zerck, Knut Reinert, Oliver Kohlbacher: OpenMS - An open-source software framework for mass spectrometry. BMC Bioinformatics 9: (2008)
39EEWiebke Timm, Alexandra Scherbart, Sebastian Böcker, Oliver Kohlbacher, Tim W. Nattkemper: Peak intensity prediction in MALDI-TOF mass spectrometry: A machine learning study to support quantitative proteomics. BMC Bioinformatics 9: (2008)
38EETorsten Blum, Oliver Kohlbacher: MetaRoute: fast search for relevant metabolic routes for interactive network navigation and visualization. Bioinformatics 24(18): 2108-2109 (2008)
37EETorsten Blum, Oliver Kohlbacher: Using Atom Mapping Rules for an Improved Detection of Relevant Routes in Weighted Metabolic Networks. Journal of Computational Biology 15(6): 565-576 (2008)
36EEMagdalena Feldhahn, Philipp Thiel, Mathias M. Schuler, Nina Hillen, Stefan Stevanovic, Hans-Georg Rammensee, Oliver Kohlbacher: EpiToolKit - a web server for computational immunomics. Nucleic Acids Research 36(Web-Server-Issue): 519-522 (2008)
2007
35 Torsten Blum, Oliver Kohlbacher: Finding Relevant Biotransformation Routes in Weighted Metabolic Networks. German Conference on Bioinformatics 2007: 30-44
34EEJan Küntzer, Christina Backes, Torsten Blum, Andreas Gerasch, Michael Kaufmann, Oliver Kohlbacher, Hans-Peter Lenhof: BNDB - The Biochemical Network Database. BMC Bioinformatics 8: (2007)
33EENico Pfeifer, Andreas Leinenbach, Christian G. Huber, Oliver Kohlbacher: Statistical learning of peptide retention behavior in chromatographic separations: a new kernel-based approach for computational proteomics. BMC Bioinformatics 8: (2007)
32EEHagit Shatkay, Annette Höglund, Scott Brady, Torsten Blum, Pierre Dönnes, Oliver Kohlbacher: SherLoc: high-accuracy prediction of protein subcellular localization by integrating text and protein sequence data. Bioinformatics 23(11): 1410-1417 (2007)
31EEOliver Kohlbacher, Knut Reinert, Clemens Gröpl, Eva Lange, Nico Pfeifer, Ole Schulz-Trieglaff, Marc Sturm: TOPP - the OpenMS proteomics pipeline. Bioinformatics 23(2): 191-197 (2007)
30EEAndreas Hildebrandt, Ralf Blossey, Sergej Rjasanow, Oliver Kohlbacher, Hans-Peter Lenhof: Electrostatic potentials of proteins in water: a structured continuum approach. Bioinformatics 23(2): 99-103 (2007)
2006
29 Christian G. Huber, Oliver Kohlbacher, Knut Reinert: Computational Proteomics, 20.-25. November 2005 Internationales Begegnungs- und Forschungszentrum für Informatik (IBFI), Schloss Dagstuhl, Germany 2006
28EEAnnette Höglund, Torsten Blum, Scott Brady, Pierre Dönnes, John San Miguel, Matthew Rocheford, Oliver Kohlbacher, Hagit Shatkay: Significantly Improved Prediction of Subcellular Localization by Integrating Text and Protein Sequence Data . Pacific Symposium on Biocomputing 2006: 16-27
27EEEva Lange, Clemens Gröpl, Knut Reinert, Oliver Kohlbacher, Andreas Hildebrandt: High-Accuracy Peak Picking of Proteomics Data Using Wavelet Techniques. Pacific Symposium on Biocomputing 2006: 243-254
26EEAnnette Höglund, Pierre Dönnes, Torsten Blum, Hans-Werner Adolph, Oliver Kohlbacher: MultiLoc: prediction of protein subcellular localization using N-terminal targeting sequences, sequence motifs and amino acid composition. Bioinformatics 22(10): 1158-1165 (2006)
25EEAndreas Moll, Andreas Hildebrandt, Hans-Peter Lenhof, Oliver Kohlbacher: BALLView: a tool for research and education in molecular modeling. Bioinformatics 22(3): 365-366 (2006)
24EEJan Küntzer, Torsten Blum, Andreas Gerasch, Christina Backes, Andreas Hildebrandt, Michael Kaufmann, Oliver Kohlbacher, Hans-Peter Lenhof: BN++ - A Biological Information System. J. Integrative Bioinformatics 3(2): (2006)
23EEDirk Neumann, Oliver Kohlbacher, Christian Merkwirth, Thomas Lengauer: A Fully Computational Model for Predicting Percutaneous Drug Absorption. Journal of Chemical Information and Modeling 46(1): 424-429 (2006)
22EEAndreas Kerzmann, Dirk Neumann, Oliver Kohlbacher: SLICK - Scoring and Energy Functions for Protein-Carbohydrate Interactions. Journal of Chemical Information and Modeling 46(4): 1635-1642 (2006)
21EEPierre Dönnes, Oliver Kohlbacher: SVMHC: a server for prediction of MHC-binding peptides. Nucleic Acids Research 34(Web-Server-Issue): 194-197 (2006)
2005
20 Michael R. Berthold, Robert C. Glen, Kay Diederichs, Oliver Kohlbacher, Ingrid Fischer: Computational Life Sciences, First International Symposium, CompLife 2005, Konstanz, Germany, September 25-27, 2005, Proceedings Springer 2005
19EEClemens Gröpl, Eva Lange, Knut Reinert, Oliver Kohlbacher, Marc Sturm, Christian G. Huber, Bettina M. Mayr, Christoph L. Klein: Algorithms for the Automated Absolute Quantification of Diagnostic Markers in Complex Proteomics Samples. CompLife 2005: 151-162
18EEChristian G. Huber, Oliver Kohlbacher, Knut Reinert: 05471 Abstract Collection - Computational Proteomics. Computational Proteomics 2005
17EEChristian G. Huber, Oliver Kohlbacher, Knut Reinert: 05471 Executive Summary - Computational Proteomics. Computational Proteomics 2005
16EEMarc Sturm, Sascha Quinten, Christian G. Huber, Oliver Kohlbacher: A machine learning approach for prediction of DNA and peptide retention times. Computational Proteomics 2005
15EENathanaël Delmotte, Bettina M. Mayr, Andreas Leinenbach, Knut Reinert, Oliver Kohlbacher, Christoph L. Klein, Christian G. Huber: Evaluation of LC-MS data for the absolute quantitative analysis of marker proteins. Computational Proteomics 2005
14EEEva Lange, Clemens Gröpl, Oliver Kohlbacher, Andreas Hildebrandt: High-accuracy peak picking of proteomics data. Computational Proteomics 2005
13 Annette Höglund, Pierre Dönnes, Torsten Blum, Hans-Werner Adolph, Oliver Kohlbacher: Using N-terminal targeting sequences, amino acid composition, and sequence motifs for predicting protein subcellular localizations. German Conference on Bioinformatics 2005: 45-59
12EEJochen Supper, Pierre Dönnes, Oliver Kohlbacher: Analysis of MHC-Peptide Binding Using Amino Acid Property-Based Decision Rules. ICAPR (1) 2005: 446-453
2004
11EEOliver Kohlbacher, Knut Reinert: Differenzielle Proteomanalyse - Experimentelle Methoden, algorithmische Herausforderungen (Differential Analysis in Proteomics: Experimental Methods, Algorithmic Challenges). it - Information Technology 46(1): 31-38 (2004)
2003
10EELiliana Florea, Bjarni V. Halldórsson, Oliver Kohlbacher, Russell Schwartz, Stephen Hoffman, Sorin Istrail: Epitope Prediction Algorithms for Peptide based Vaccine Design. CSB 2003: 17-26
2002
9 Marite Sirava, T. Schäfer, Markus Eiglsperger, Michael Kaufmann, Oliver Kohlbacher, Erich Bornberg-Bauer, Hans-Peter Lenhof: BioMiner - modeling, analyzing, and visualizing biochemical pathways and networks. ECCB 2002: 219-230
8 Ernst Althaus, Oliver Kohlbacher, Hans-Peter Lenhof, Peter Müller: A Combinatorial Approach to Protein Docking with Flexible Side Chains. Journal of Computational Biology 9(4): 597-612 (2002)
2001
7EERussell J. Turner, Kabir Chaturvedi, Nathan Edwards, Daniel P. Fasulo, Aaron L. Halpern, Daniel H. Huson, Oliver Kohlbacher, Jason R. Miller, Knut Reinert, Karin A. Remington, Russell Schwartz, Brian Walenz, Shibu Yooseph, Sorin Istrail: Visualization challenges for a new cyberpharmaceutical computing paradigm. IEEE Symposium on Parallel and Large-Data Visualization and Graphics 2001: 7-18
6EEOliver Kohlbacher, Andreas Burchardt, Andreas Moll, Andreas Hildebrandt, Peter Bayer, Hans-Peter Lenhof: A NMR-spectra-based scoring function for protein docking. RECOMB 2001: 184-192
2000
5EEErnst Althaus, Oliver Kohlbacher, Hans-Peter Lenhof, Peter Müller: A combinatorial approach to protein docking with flexible side-chains. RECOMB 2000: 15-24
4EENicolas Boghossian, Oliver Kohlbacher, Hans-Peter Lenhof: Rapid Software Prototyping in Molecular Modeling Using the Biochemical Algorithms Library (BALL). ACM Journal of Experimental Algorithmics 5: 16 (2000)
3 Oliver Kohlbacher, Hans-Peter Lenhof: BALL-rapid software prototyping in computational molecular biology. Bioinformatics 16(9): 815-824 (2000)
1999
2EENicolas Boghossian, Oliver Kohlbacher, Hans-Peter Lenhof: BALL: Biochemical Algorithms Library. Algorithm Engineering 1999: 331-345
1 Oliver Kohlbacher, Hans-Peter Lenhof: Rapid Software Prototyping in Computational Molecular Biology. German Conference on Bioinformatics 1999: 81-92

Coauthor Index

1Hans-Werner Adolph [13] [26]
2Maher Al-Awadhi [42]
3Ernst Althaus [5] [8] [48]
4Christina Backes [24] [34] [42]
5Peter Bayer [6]
6Michael R. Berthold [20]
7Andreas Bertsch [40]
8Ralf Blossey [30]
9Torsten Blum [13] [24] [26] [28] [32] [34] [35] [37] [38]
10Sebastian Böcker [39]
11Nicolas Boghossian [2] [4]
12Erich Bornberg-Bauer [9]
13Scott Brady [28] [32]
14Andreas Burchardt [6]
15Wolfgang Busch [44] [47]
16Kabir Chaturvedi [7]
17Nathanaël Delmotte [15]
18Kay Diederichs [20]
19Pierre Dönnes [12] [13] [21] [26] [28] [32] [46]
20Nathan Edwards [7]
21Markus Eiglsperger [9]
22Daniel P. Fasulo [7]
23Magdalena Feldhahn [36] [46]
24Ingrid Fischer [20]
25Liliana Florea [10]
26Andreas Gerasch [24] [34] [42]
27Robert C. Glen [20]
28Clemens Gröpl [14] [19] [27] [31] [40] [41]
29Bjarni V. Halldórsson [10]
30Aaron L. Halpern [7]
31Andreas Hildebrandt [6] [14] [24] [25] [27] [30] [40]
32Nina Hillen [36]
33Stephen Hoffman [10]
34Annette Höglund [13] [26] [28] [32]
35Christian G. Huber [15] [16] [17] [18] [19] [29] [33]
36Daniel H. Huson [7]
37Rene Hussong [40]
38Sorin Istrail [7] [10]
39Michael Kaufmann [9] [24] [34] [42]
40Andreas Keller [42]
41Andreas Kerzmann [22]
42Gunnar W. Klau [48]
43Christoph L. Klein [15] [19]
44Jan Küntzer [24] [34] [42]
45Eva Lange [14] [19] [27] [31] [40]
46Andreas Leinenbach [15] [33]
47Thomas Lengauer [23]
48Hans-Peter Lenhof [1] [2] [3] [4] [5] [6] [8] [9] [24] [25] [30] [34] [42] [48]
49Jan Lohmann [44] [47]
50Bettina M. Mayr [15] [19]
51Christian Merkwirth [23]
52John San Miguel [28]
53Jason R. Miller [7]
54Andreas Moll [6] [25]
55Peter Müller [5] [8]
56Tim W. Nattkemper [39]
57Dirk Neumann [22] [23]
58Nico Pfeifer [31] [33] [40] [41] [43]
59Sascha Quinten [16]
60Hans-Georg Rammensee [36]
61Gunnar Rätsch [44] [47]
62Knut Reinert [7] [11] [15] [17] [18] [19] [27] [29] [31] [40] [41] [48]
63Karin A. Remington [7]
64Sergej Rjasanow [30]
65Matthew Rocheford [28]
66T. Schäfer [9]
67Alexandra Scherbart [39]
68Mathias M. Schuler [36]
69Sebastian J. Schultheiß [44] [47]
70Ole Schulz-Trieglaff [31] [40] [41]
71Russell Schwartz [7] [10]
72Hagit Shatkay [28] [32]
73Marite Sirava [9]
74Stefan Stevanovic [36]
75Marc Sturm [16] [19] [31] [40]
76Jochen Supper [12]
77Philipp Thiel [36] [46]
78Wiebke Timm [39]
79Nora C. Toussaint [45]
80Russell J. Turner [7]
81Brian Walenz [7]
82Shibu Yooseph [7]
83Alexandra Zerck [40]

Colors in the list of coauthors

Copyright © Tue Nov 3 08:52:44 2009 by Michael Ley (ley@uni-trier.de)