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Minoru Kanehisa Vis

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*2009
62EEYoshihiro Yamanishi, Masahiro Hattori, Masaaki Kotera, Susumu Goto, Minoru Kanehisa: E-zyme: predicting potential EC numbers from the chemical transformation pattern of substrate-product pairs. Bioinformatics 25(12): (2009)
2008
61EEMinoru Kanehisa: KEGG for Medical and Pharmaceutical Applications. APBC 2008: 5
60EEKosuke Hashimoto, Ichigaku Takigawa, Motoki Shiga, Minoru Kanehisa, Hiroshi Mamitsuka: Mining significant tree patterns in carbohydrate sugar chains. ECCB 2008: 167-173
59EEYoshihiro Yamanishi, Michihiro Araki, Alex Gutteridge, Wataru Honda, Minoru Kanehisa: Prediction of drug-target interaction networks from the integration of chemical and genomic spaces. ISMB 2008: 232-240
58EEC. Nelson Hayes, Diego Diez, Nicolas Joannin, Wataru Honda, Minoru Kanehisa, Mats Wahlgren, Craig E. Wheelock, Susumu Goto: varDB: a pathogen-specific sequence database of protein families involved in antigenic variation. Bioinformatics 24(21): 2564-2565 (2008)
57EEShuichi Kawashima, Piotr Pokarowski, Maria Pokarowska, Andrzej Kolinski, Toshiaki Katayama, Minoru Kanehisa: AAindex: amino acid index database, progress report 2008. Nucleic Acids Research 36(Database-Issue): 202-205 (2008)
56EEMinoru Kanehisa, Michihiro Araki, Susumu Goto, Masahiro Hattori, Mika Hirakawa, Masumi Itoh, Toshiaki Katayama, Shuichi Kawashima, Shujiro Okuda, Toshiaki Tokimatsu, Yoshihiro Yamanishi: KEGG for linking genomes to life and the environment. Nucleic Acids Research 36(Database-Issue): 480-484 (2008)
55EEShujiro Okuda, Takuji Yamada, Masami Hamajima, Masumi Itoh, Toshiaki Katayama, Peer Bork, Susumu Goto, Minoru Kanehisa: KEGG Atlas mapping for global analysis of metabolic pathways. Nucleic Acids Research 36(Web-Server-Issue): 423-426 (2008)
54EEKosuke Hashimoto, Kiyoko F. Aoki-Kinoshita, Nobuhisa Ueda, Minoru Kanehisa, Hiroshi Mamitsuka: A new efficient probabilistic model for mining labeled ordered trees applied to glycobiology. TKDD 2(1): (2008)
2007
53EETetsuya Sato, Yoshihiro Yamanishi, Katsuhisa Horimoto, Minoru Kanehisa, Hiroyuki Toh: Inference of Protein-Protein Interactions by Using Co-evolutionary Information. AB 2007: 322-333
52EEMasashi Fujita, Hisaaki Mihara, Susumu Goto, Nobuyoshi Esaki, Minoru Kanehisa: Mining prokaryotic genomes for unknown amino acids: a stop-codon-based approach. BMC Bioinformatics 8: (2007)
51EEAlex Gutteridge, Minoru Kanehisa, Susumu Goto: Regulation of metabolic networks by small molecule metabolites. BMC Bioinformatics 8: (2007)
50EEVachiranee Limviphuvadh, Seigo Tanaka, Susumu Goto, Kunihiro Ueda, Minoru Kanehisa: The commonality of protein interaction networks determined in neurodegenerative disorders (NDDs). Bioinformatics 23(16): 2129-2138 (2007)
49EEYuki Moriya, Masumi Itoh, Shujiro Okuda, Akiyasu C. Yoshizawa, Minoru Kanehisa: KAAS: an automatic genome annotation and pathway reconstruction server. Nucleic Acids Research 35(Web-Server-Issue): 182-185 (2007)
48EEZhenjun Hu, David M. Ng, Takuji Yamada, Chunnuan Chen, Shuichi Kawashima, Joe Mellor, Bolan Linghu, Minoru Kanehisa, Joshua M. Stuart, Charles DeLisi: VisANT 3.0: new modules for pathway visualization, editing, prediction and construction. Nucleic Acids Research 35(Web-Server-Issue): 625-632 (2007)
2006
47EEKiyoko F. Aoki-Kinoshita, Minoru Kanehisa, Ming-Yang Kao, Xiang-Yang Li, Weizhao Wang: A 6-Approximation Algorithm for Computing Smallest Common AoN-Supertree with Application to the Reconstruction of Glycan Trees. ISAAC 2006: 100-110
46EEKiyoko F. Aoki-Kinoshita, Nobuhisa Ueda, Hiroshi Mamitsuka, Minoru Kanehisa: ProfilePSTMM: capturing tree-structure motifs in carbohydrate sugar chains. ISMB (Supplement of Bioinformatics) 2006: 25-34
45EEJose C. Nacher, Jean-Marc Schwartz, Minoru Kanehisa, Tatsuya Akutsu: Identification of metabolic units induced by environmental signals. ISMB (Supplement of Bioinformatics) 2006: 375-383
44EEKosuke Hashimoto, Kiyoko F. Aoki-Kinoshita, Nobuhisa Ueda, Minoru Kanehisa, Hiroshi Mamitsuka: A new efficient probabilistic model for mining labeled ordered trees. KDD 2006: 177-186
43EETakuji Yamada, Minoru Kanehisa, Susumu Goto: Extraction of phylogenetic network modules from the metabolic network. BMC Bioinformatics 7: 130 (2006)
42EEJean-Marc Schwartz, Minoru Kanehisa: Quantitative elementary mode analysis of metabolic pathways: the example of yeast glycolysis. BMC Bioinformatics 7: 186 (2006)
41EETetsuya Sato, Yoshihiro Yamanishi, Katsuhisa Horimoto, Minoru Kanehisa, Hiroyuki Toh: Partial correlation coefficient between distance matrices as a new indicator of protein-protein interactions. Bioinformatics 22(20): 2488-2492 (2006)
40EEMinoru Kanehisa, Susumu Goto, Masahiro Hattori, Kiyoko F. Aoki-Kinoshita, Masumi Itoh, Shuichi Kawashima, Toshiaki Katayama, Michihiro Araki, Mika Hirakawa: From genomics to chemical genomics: new developments in KEGG. Nucleic Acids Research 34(Database-Issue): 354-357 (2006)
39EEShujiro Okuda, Toshiaki Katayama, Shuichi Kawashima, Susumu Goto, Minoru Kanehisa: ODB: a database of operons accumulating known operons across multiple genomes. Nucleic Acids Research 34(Database-Issue): 358-362 (2006)
38EEAli Masoudi-Nejad, Koichiro Tonomura, Shuichi Kawashima, Yuki Moriya, Masanori Suzuki, Masumi Itoh, Minoru Kanehisa, Takashi Endo, Susumu Goto: EGassembler: online bioinformatics service for large-scale processing, clustering and assembling ESTs and genomic DNA fragments. Nucleic Acids Research 34(Web-Server-Issue): 459-462 (2006)
2005
37EEJean-Marc Schwartz, Minoru Kanehisa: A quadratic programming approach for decomposing steady-state metabolic flux distributions onto elementary modes. ECCB/JBI 2005: 205
36EEYoshihiro Yamanishi, Jean-Philippe Vert, Minoru Kanehisa: Supervised enzyme network inference from the integration of genomic data and chemical information. ISMB (Supplement of Bioinformatics) 2005: 468-477
35EETetsuya Sato, Yoshihiro Yamanishi, Minoru Kanehisa, Hiroyuki Toh: The inference of protein-protein interactions by co-evolutionary analysis is improved by excluding the information about the phylogenetic relationships. Bioinformatics 21(17): 3482-3489 (2005)
34EEShin Kawano, Kosuke Hashimoto, Takashi Miyama, Susumu Goto, Minoru Kanehisa: Prediction of glycan structures from gene expression data based on glycosyltransferase reactions. Bioinformatics 21(21): 3976-3982 (2005)
33EEMasumi Itoh, Susumu Goto, Tatsuya Akutsu, Minoru Kanehisa: Fast and accurate database homology search using upper bounds of local alignment scores. Bioinformatics 21(7): 912-921 (2005)
32EEKiyoko F. Aoki, Hiroshi Mamitsuka, Tatsuya Akutsu, Minoru Kanehisa: A score matrix to reveal the hidden links in glycans. Bioinformatics 21(8): 1457-1463 (2005)
31EEYoshinori Tamada, Hideo Bannai, Seiya Imoto, Toshiaki Katayama, Minoru Kanehisa, Satoru Miyano: Utilizing Evolutionary Information and Gene Expression Data for Estimating Gene Networks with Bayesian Network Models. J. Bioinformatics and Computational Biology 3(6): 1295-1314 (2005)
2004
30EEYoshihiro Yamanishi, Jean-Philippe Vert, Minoru Kanehisa: Protein network inference from multiple genomic data: a supervised approach. ISMB/ECCB (Supplement of Bioinformatics) 2004: 363-370
29EEKiyoko F. Aoki, Nobuhisa Ueda, Atsuko Yamaguchi, Minoru Kanehisa, Tatsuya Akutsu, Hiroshi Mamitsuka: Application of a new probabilistic model for recognizing complex patterns in glycans. ISMB/ECCB (Supplement of Bioinformatics) 2004: 6-14
28EEJose C. Nacher, Nobuhisa Ueda, Takuji Yamada, Minoru Kanehisa, Tatsuya Akutsu: Clustering under the line graph transformation: application to reaction network. BMC Bioinformatics 5: 207 (2004)
27 Minoru Kanehisa, Susumu Goto, Shuichi Kawashima, Yasushi Okuno, Masahiro Hattori: The KEGG resource for deciphering the genome. Nucleic Acids Research 32(Database-Issue): 277-280 (2004)
26 Kiyoko F. Aoki, Atsuko Yamaguchi, Nobuhisa Ueda, Tatsuya Akutsu, Hiroshi Mamitsuka, Susumu Goto, Minoru Kanehisa: KCaM (KEGG Carbohydrate Matcher): a software tool for analyzing the structures of carbohydrate sugar chains. Nucleic Acids Research 32(Web-Server-Issue): 267-272 (2004)
25EEKiyoko F. Aoki, Nobuhisa Ueda, Atsuko Yamaguchi, Tatsuya Akutsu, Minoru Kanehisa, Hiroshi Mamitsuka: Managing and Analyzing Carbohydrate Data. SIGMOD Record 33(2): 33-38 (2004)
2003
24 Jean-Philippe Vert, Minoru Kanehisa: Extracting active pathways from gene expression data. ECCB 2003: 238-244
23EEYoshihiro Yamanishi, Jean-Philippe Vert, A. Nakaya, Minoru Kanehisa: Extraction of correlated gene clusters from multiple genomic data by generalized kernel canonical correlation analysis. ISMB (Supplement of Bioinformatics) 2003: 323-330
22 Keun-Joon Park, Minoru Kanehisa: Prediction of protein subcellular locations by support vector machines using compositions of amino acids and amino acid pairs. Bioinformatics 19(13): 1656-1663 (2003)
2002
21EEJean-Philippe Vert, Minoru Kanehisa: Graph-Driven Feature Extraction From Microarray Data Using Diffusion Kernels and Kernel CCA. NIPS 2002: 1425-1432
20 Takeshi Kawashima, Shuichi Kawashima, Yuji Kohara, Minoru Kanehisa, Kazuhiro W. Makabe: Update of MAGEST: Maboya Gene Expression patterns and Sequence Tags. Nucleic Acids Research 30(1): 119-120 (2002)
19 Susumu Goto, Yasushi Okuno, Masahiro Hattori, Takaaki Nishioka, Minoru Kanehisa: LIGAND: database of chemical compounds and reactions in biological pathways. Nucleic Acids Research 30(1): 402-404 (2002)
18 Minoru Kanehisa, Susumu Goto, Shuichi Kawashima, Akihiro Nakaya: The KEGG databases at GenomeNet. Nucleic Acids Research 30(1): 42-46 (2002)
2000
17EEMinoru Kanehisa: Sequence comparison to graph comparison--a new generation of algorithms for network analysis of interacting molecules (abstract only). RECOMB 2000: 176
16 Takeshi Kawashima, Shuichi Kawashima, Minoru Kanehisa, Hiroki Nishida, Kazuhiro W. Makabe: MAGEST: MAboya Gene Expression patterns and Sequence Tags. Nucleic Acids Research 28(1): 133-135 (2000)
15 Minoru Kanehisa, Susumu Goto: KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Research 28(1): 27-30 (2000)
14 Shuichi Kawashima, Minoru Kanehisa: AAindex: Amino Acid index database. Nucleic Acids Research 28(1): 374 (2000)
13 Susumu Goto, Takaaki Nishioka, Minoru Kanehisa: LIGAND: chemical database of enzyme reactions. Nucleic Acids Research 28(1): 380-382 (2000)
1999
12 Kentaro Tomii, Minoru Kanehisa: Systematic Detection of Protein Structural Motifs. Pattern Discovery in Biomolecular Data 1999: 97-110
11 Hiroyuki Ogata, Susumu Goto, Kazushige Sato, Wataru Fujibuchi, Hidemasa Bono, Minoru Kanehisa: KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Research 27(1): 29-34 (1999)
10 Shuichi Kawashima, Hiroyuki Ogata, Minoru Kanehisa: AAindex: Amino Acid Index Database. Nucleic Acids Research 27(1): 368-369 (1999)
9 Susumu Goto, Takaaki Nishioka, Minoru Kanehisa: LIGAND database for enzymes, compounds and reactions. Nucleic Acids Research 27(1): 377-379 (1999)
1998
8 Susumu Goto, Takaaki Nishioka, Minoru Kanehisa: LIGAND: chemical database for enzyme reactions. Bioinformatics 14(7): 591-599 (1998)
1994
7 Takahiko Suzuki, Toshihisa Takagi, Satoru Kuhara, Minoru Kanehisa: Development of an integrated Database for Genome Mapping and Nucleotide Sequences. HICSS (5) 1994: 68-76
1993
6 Y. Matsuo, Minoru Kanehisa: An approach to systematic detection of protein structural motifs. Computer Applications in the Biosciences 9(2): 153-159 (1993)
5 Masato Ishikawa, Tomoyuki Toya, Masaki Hoshida, Katsumi Nitta, A. Ogiwara, Minoru Kanehisa: Multiple sequence alignment by parallel simulated annealing. Computer Applications in the Biosciences 9(3): 267-273 (1993)
1985
4 Christian Burks, James W. Fickett, W. B. Goad, Minoru Kanehisa, F. I. Lewitter, W. P. Rindone, C. D. Swindell, C. S. Tung, H. S. Bilofsky: The GenBank nucleic acid sequence database. Computer Applications in the Biosciences 1(4): 225-233 (1985)
1984
3 Minoru Kanehisa, James W. Fickett, W. B. Goad: A relational database system for the maintenance and verification of the Los Alamos sequence library. Nucleic Acids Research 12(1): 149-158 (1984)
2 Minoru Kanehisa: Use of statistical criteria for screening potential homologies in nucleic acid sequences. Nucleic Acids Research 12(1): 203-213 (1984)
1 Minoru Kanehisa, P. Klein, P. Greif, Charles DeLisi: Computer analysis and structure prediction of nucleic acids and proteins. Nucleic Acids Research 12(1): 417-428 (1984)

Coauthor Index

1Tatsuya Akutsu [25] [26] [28] [29] [32] [33] [45]
2Kiyoko F. Aoki-Kinoshita (Kiyoko F. Aoki) [25] [26] [29] [32] [40] [44] [46] [47] [54]
3Michihiro Araki [40] [56] [59]
4Hideo Bannai [31]
5H. S. Bilofsky [4]
6Hidemasa Bono [11]
7Peer Bork [55]
8Christian Burks [4]
9Chunnuan Chen [48]
10Charles DeLisi [1] [48]
11Diego Diez [58]
12Takashi Endo [38]
13Nobuyoshi Esaki [52]
14James W. Fickett [3] [4]
15Wataru Fujibuchi [11]
16Masashi Fujita [52]
17W. B. Goad [3] [4]
18Susumu Goto [8] [9] [11] [13] [15] [18] [19] [26] [27] [33] [34] [38] [39] [40] [43] [50] [51] [52] [55] [56] [58] [62]
19P. Greif [1]
20Alex Gutteridge [51] [59]
21Masami Hamajima [55]
22Kosuke Hashimoto [34] [44] [54] [60]
23Masahiro Hattori [19] [27] [40] [56] [62]
24C. Nelson Hayes [58]
25Mika Hirakawa [40] [56]
26Wataru Honda [58] [59]
27Katsuhisa Horimoto [41] [53]
28Masaki Hoshida [5]
29Zhenjun Hu [48]
30Seiya Imoto [31]
31Masato Ishikawa [5]
32Masumi Itoh [33] [38] [40] [49] [55] [56]
33Nicolas Joannin [58]
34Ming-Yang Kao [47]
35Toshiaki Katayama [31] [39] [40] [55] [56] [57]
36Shin Kawano [34]
37Shuichi Kawashima [10] [14] [16] [18] [20] [27] [38] [39] [40] [48] [56] [57]
38Takeshi Kawashima [16] [20]
39P. Klein [1]
40Yuji Kohara [20]
41Andrzej Kolinski [57]
42Masaaki Kotera [62]
43Satoru Kuhara [7]
44F. I. Lewitter [4]
45Xiang-Yang Li [47]
46Vachiranee Limviphuvadh [50]
47Bolan Linghu [48]
48Kazuhiro W. Makabe [16] [20]
49Hiroshi Mamitsuka [25] [26] [29] [32] [44] [46] [54] [60]
50Ali Masoudi-Nejad [38]
51Y. Matsuo [6]
52Joe Mellor [48]
53Hisaaki Mihara [52]
54Takashi Miyama [34]
55Satoru Miyano [31]
56Yuki Moriya [38] [49]
57Jose C. Nacher [28] [45]
58A. Nakaya [23]
59Akihiro Nakaya [18]
60David M. Ng [48]
61Hiroki Nishida [16]
62Takaaki Nishioka [8] [9] [13] [19]
63Katsumi Nitta [5]
64Hiroyuki Ogata [10] [11]
65A. Ogiwara [5]
66Shujiro Okuda [39] [49] [55] [56]
67Yasushi Okuno [19] [27]
68Keun-Joon Park [22]
69Maria Pokarowska [57]
70Piotr Pokarowski [57]
71W. P. Rindone [4]
72Kazushige Sato [11]
73Tetsuya Sato [35] [41] [53]
74Jean-Marc Schwartz [37] [42] [45]
75Motoki Shiga [60]
76Joshua M. Stuart [48]
77Masanori Suzuki [38]
78Takahiko Suzuki [7]
79C. D. Swindell [4]
80Toshihisa Takagi [7]
81Ichigaku Takigawa [60]
82Yoshinori Tamada [31]
83Seigo Tanaka [50]
84Hiroyuki Toh [35] [41] [53]
85Toshiaki Tokimatsu [56]
86Kentaro Tomii [12]
87Koichiro Tonomura [38]
88Tomoyuki Toya [5]
89C. S. Tung [4]
90Kunihiro Ueda [50]
91Nobuhisa Ueda [25] [26] [28] [29] [44] [46] [54]
92Jean-Philippe Vert [21] [23] [24] [30] [36]
93Mats Wahlgren [58]
94Weizhao Wang [47]
95Craig E. Wheelock [58]
96Takuji Yamada [28] [43] [48] [55]
97Atsuko Yamaguchi [25] [26] [29]
98Yoshihiro Yamanishi [23] [30] [35] [36] [41] [53] [56] [59] [62]
99Akiyasu C. Yoshizawa [49]

Colors in the list of coauthors

Copyright © Tue Nov 3 08:52:44 2009 by Michael Ley (ley@uni-trier.de)