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Jesús A. Izaguirre Vis

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*2009
24 Faruck Morcos, Charles Lamanna, Nitesh Chawla, Jesús A. Izaguirre: Determination of Specificity Residues in Two Component Systems using Graphlets. BIOCOMP 2009: 860-866
2008
23EEFaruck Morcos, Charles Lamanna, Marcin Sikora, Jesús A. Izaguirre: Cytoprophet: a Cytoscape plug-in for protein and domain interaction networks inference. Bioinformatics 24(19): 2265-2266 (2008)
22EEFaruck Morcos, Charles Lamanna, Marcin Sikora, Jesús A. Izaguirre: Addendum. Cytoprophet: a Cytoscape plug-in for protein and domain interaction networks inference. Bioinformatics 24(23): 2805 (2008)
21EEJustin M. Wozniak, Paul Brenner, Douglas Thain, Aaron Striegel, Jesús A. Izaguirre: Making the best of a bad situation: Prioritized storage management in GEMS. Future Generation Comp. Syst. 24(1): 10-16 (2008)
20EEPaul Brenner, Justin M. Wozniak, Douglas Thain, Aaron Striegel, J. W. Peng, Jesús A. Izaguirre: Biomolecular committor probability calculation enabled by processing in network storage. Parallel Computing 34(11): 652-660 (2008)
2007
19EETrevor M. Cickovski, Chris Sweet, Jesús A. Izaguirre: MDL, A Domain-Specific Language for Molecular Dynamics. Annual Simulation Symposium 2007: 256-266
18EEPaul Brenner, Justin M. Wozniak, Douglas Thain, Aaron Striegel, J. W. Peng, Jesús A. Izaguirre: Biomolecular Path Sampling Enabled by Processing in Network Storage. IPDPS 2007: 1-6
17EENan Chen, James A. Glazier, Jesús A. Izaguirre, Mark S. Alber: A parallel implementation of the Cellular Potts Model for simulation of cell-based morphogenesis. Computer Physics Communications 176(11-12): 670-681 (2007)
16EEChengbang Huang, Faruck Morcos, Simon P. Kanaan, Stefan Wuchty, Danny Z. Chen, Jesús A. Izaguirre: Predicting Protein-Protein Interactions from Protein Domains Using a Set Cover Approach. IEEE/ACM Trans. Comput. Biology Bioinform. 4(1): 78-87 (2007)
2005
15EEJustin M. Wozniak, Aaron Striegel, David Salyers, Jesús A. Izaguirre: GIPSE: Streamlining the Management of Simulation on the Grid. Annual Simulation Symposium 2005: 130-137
14EEDouglas Thain, Sander Klous, Justin M. Wozniak, Paul Brenner, Aaron Striegel, Jesús A. Izaguirre: Separating Abstractions from Resources in a Tactical Storage System. SC 2005: 55
13EETrevor M. Cickovski, Chengbang Huang, Rajiv Chaturvedi, Tilmann Glimm, H. George E. Hentschel, Mark S. Alber, James A. Glazier, Stuart A. Newman, Jesús A. Izaguirre: A Framework for Three-Dimensional Simulation of Morphogenesis. IEEE/ACM Trans. Comput. Biology Bioinform. 2(4): 273-288 (2005)
12EEJesús A. Izaguirre, Scott S. Hampton, Thierry Matthey: Parallel multigrid summation for the N-body problem. J. Parallel Distrib. Comput. 65(8): 949-962 (2005)
11EEMichael S. Crocker, Scott S. Hampton, Thierry Matthey, Jesús A. Izaguirre: MDSIMAID: Automatic parameter optimization in fast electrostatic algorithms. Journal of Computational Chemistry 26(10): 1021-1031 (2005)
2004
10EERajiv Chaturvedi, Chengbang Huang, Jesús A. Izaguirre, Stuart A. Newman, James A. Glazier, Mark S. Alber: A Hybrid Discrete-Continuum Model for 3-D Skeletogenesis of the Vertebrate Limb. ACRI 2004: 543-552
9EEScott S. Hampton, Jesús A. Izaguirre: Improved Sampling for Biological Molecules Using Shadow Hybrid Monte Carlo. International Conference on Computational Science 2004: 268-275
8EEThierry Matthey, Trevor M. Cickovski, Scott S. Hampton, Alice Ko, Qun Ma, Matthew Nyerges, Troy Raeder, Thomas Slabach, Jesús A. Izaguirre: ProtoMol, an object-oriented framework for prototyping novel algorithms for molecular dynamics. ACM Trans. Math. Softw. 30(3): 237-265 (2004)
7EEJesús A. Izaguirre, Rajiv Chaturvedi, Chengbang Huang, Trevor M. Cickovski, J. Coffland, G. Thomas, Gabor Forgacs, Mark S. Alber, G. Hentschel, Stuart A. Newman, James A. Glazier: COMPUCELL, a multi-model framework for simulation of morphogenesis. Bioinformatics 20(7): 1129-1137 (2004)
2003
6EERajiv Chaturvedi, Jesús A. Izaguirre, Chengbang Huang, Trevor M. Cickovski, P. Virtue, G. Thomas, Gabor Forgacs, Mark S. Alber, G. Hentschel, Stuart A. Newman, James A. Glazier: Multi-model Simulations of Chicken Limb Morphogenesis. International Conference on Computational Science 2003: 39-49
5EEThierry Matthey, Alice Ko, Jesús A. Izaguirre: PROTOMOL: A Molecular Dynamics Research Framework for Algorithmic Development. International Conference on Computational Science 2003: 50-59
4 Qun Ma, Jesús A. Izaguirre, Robert D. Skeel: Nonlinear Instability in Multiple Time Stepping Molecular Dynamics. SAC 2003: 167-171
3 Qun Ma, Jesús A. Izaguirre: Long Time Step Molecular Dynamics using Targeted Langevin Stabilization. SAC 2003: 178-182
2001
2 Shannon K. Kuntz, Richard C. Murphy, Michael T. Niemier, Jesús A. Izaguirre, Peter M. Kogge: Petaflop Computing for Protein Folding. PPSC 2001
1 Thierry Matthey, Jesús A. Izaguirre: ProtoMol: A Molecular Dynamics Framework with Incremental Parallelization. PPSC 2001

Coauthor Index

1Mark S. Alber [6] [7] [10] [13] [17]
2Paul Brenner [14] [18] [20] [21]
3Rajiv Chaturvedi [6] [7] [10] [13]
4Nitesh Chawla [24]
5Danny Z. Chen [16]
6Nan Chen [17]
7Trevor M. Cickovski [6] [7] [8] [13] [19]
8J. Coffland [7]
9Michael S. Crocker [11]
10Gabor Forgacs [6] [7]
11James A. Glazier [6] [7] [10] [13] [17]
12Tilmann Glimm [13]
13Scott S. Hampton [8] [9] [11] [12]
14G. Hentschel [6] [7]
15H. George E. Hentschel [13]
16Chengbang Huang [6] [7] [10] [13] [16]
17Simon P. Kanaan [16]
18Sander Klous [14]
19Alice Ko [5] [8]
20Peter M. Kogge [2]
21Shannon K. Kuntz [2]
22Charles Lamanna [22] [23] [24]
23Qun Ma [3] [4] [8]
24Thierry Matthey [1] [5] [8] [11] [12]
25Faruck Morcos [16] [22] [23] [24]
26Richard C. Murphy [2]
27Stuart A. Newman [6] [7] [10] [13]
28Michael T. Niemier [2]
29Matthew Nyerges [8]
30J. W. Peng [18] [20]
31Troy Raeder [8]
32David Salyers [15]
33Marcin Sikora [22] [23]
34Robert D. Skeel [4]
35Thomas Slabach [8]
36Aaron Striegel [14] [15] [18] [20] [21]
37Chris Sweet [19]
38Douglas Thain [14] [18] [20] [21]
39G. Thomas [6] [7]
40P. Virtue [6]
41Justin M. Wozniak [14] [15] [18] [20] [21]
42Stefan Wuchty [16]

Copyright © Tue Nov 3 08:52:44 2009 by Michael Ley (ley@uni-trier.de)