| * | 2008 |
| 15 | EE | Martin Oti,
Jeroen van Reeuwijk,
Martijn A. Huynen,
Han G. Brunner:
Conserved co-expression for candidate disease gene prioritization.
BMC Bioinformatics 9: (2008) |
| 14 | EE | Bas E. Dutilh,
Ying He,
Maarten L. Hekkelman,
Martijn A. Huynen:
Signature, a web server for taxonomic characterization of sequence samples using signature genes.
Nucleic Acids Research 36(Web-Server-Issue): 470-474 (2008) |
| 2007 |
| 13 | EE | Stefan Gräf,
Fiona G. G. Nielsen,
Stefan Kurtz,
Martijn A. Huynen,
Ewan Birney,
Henk Stunnenberg,
Paul Flicek:
Optimized design and assessment of whole genome tiling arrays.
ISMB/ECCB (Supplement of Bioinformatics) 2007: 195-204 |
| 12 | EE | Fiona G. G. Nielsen,
Stefan Gräf,
Xinmin Zhang,
Stefan Kurtz,
Sergei Denissov,
Roland Green,
Ewan Birney,
Paul Flicek,
Martijn A. Huynen,
Henk Stunnenberg:
Optimising oligonucleotide array design for ChIP-on-chip.
BMC Bioinformatics 8(S-8): (2007) |
| 11 | EE | René T. J. M. van der Heijden,
Berend Snel,
Vera van Noort,
Martijn A. Huynen:
Orthology prediction at scalable resolution by phylogenetic tree analysis.
BMC Bioinformatics 8: (2007) |
| 10 | EE | Bas E. Dutilh,
Vera van Noort,
René T. J. M. van der Heijden,
T. Boekhout,
Berend Snel,
Martijn A. Huynen:
Assessment of phylogenomic and orthology approaches for phylogenetic inference.
Bioinformatics 23(7): 815-824 (2007) |
| 2005 |
| 9 | EE | Toni Gabaldón,
Martijn A. Huynen:
Lineage-specific gene loss following mitochondrial endosymbiosis and its potential for function prediction in eukaryotes.
ECCB/JBI 2005: 150 |
| 8 | EE | Victor Kunin,
Sarah A. Teichmann,
Martijn A. Huynen,
Christos A. Ouzounis:
The properties of protein family space depend on experimental design.
Bioinformatics 21(11): 2618-2622 (2005) |
| 7 | EE | Christian von Mering,
Lars Juhl Jensen,
Berend Snel,
Sean D. Hooper,
Markus Krupp,
Mathilde Foglierini,
Nelly Jouffre,
Martijn A. Huynen,
Peer Bork:
STRING: known and predicted protein-protein associations, integrated and transferred across organisms.
Nucleic Acids Research 33(Database-Issue): 433-437 (2005) |
| 2004 |
| 6 | EE | Harm van Bakel,
Martijn A. Huynen,
Cisca Wijmenga:
Prokaryotic diversity of the Saccharomyces cerevisiae Atx1p-mediated copper pathway.
Bioinformatics 20(16): 2644-2655 (2004) |
| 2003 |
| 5 | | Christian von Mering,
Martijn A. Huynen,
Daniel Jaeggi,
Steffen Schmidt,
Peer Bork,
Berend Snel:
STRING: a database of predicted functional associations between proteins.
Nucleic Acids Research 31(1): 258-261 (2003) |
| 1998 |
| 4 | | Thomas Dandekar,
Stefan Schuster,
Martijn A. Huynen,
Peer Bork:
Pathway alignment: Application in the comparative analysis of glycolysis.
German Conference on Bioinformatics 1998 |
| 1996 |
| 3 | | Ivo L. Hofacker,
Martijn A. Huynen,
Peter F. Stadler,
Paul E. Stolorz:
Knowledge Discovery in RNA Sequence Families of HIV Using Scalable Computers.
KDD 1996: 20-25 |
| 2 | | Martijn A. Huynen,
Alan S. Perelson,
W. A. Vieira,
Peter F. Stadler:
Base Pairing Probabilities in a Complete HIV-1 RNA.
Journal of Computational Biology 3(2): 253-274 (1996) |
| 1989 |
| 1 | | Martijn A. Huynen,
Paulien Hogeweg:
Genetic Algorithms and Information Accumulation during the Evolution of Gene Regulation.
ICGA 1989: 225-230 |