Timothy R. Hughes Vis

*	2009
10	EE	Trevis M. Alleyne, Lourdes Peña Castillo, Gwenael Badis, Shaheynoor Talukder, Michael F. Berger, Andrew R. Gehrke, Anthony A. Philippakis, Martha L. Bulyk, Quaid Morris, Timothy R. Hughes: Predicting the binding preference of transcription factors to individual DNA k-mers. Bioinformatics 25(8): 1012-1018 (2009)
	2008
9	EE	Gerald Quon, Yee Whye Teh, Esther Chan, Timothy R. Hughes, Michael Brudno, Quaid Morris: A mixture model for the evolution of gene expression in non-homogeneous datasets. NIPS 2008: 1297-1304
	2007
8	EE	Xiaoyu Chen, Timothy R. Hughes, Quaid Morris: RankMotif++: a motif-search algorithm that accounts for relative ranks of K-mers in binding transcription factors. ISMB/ECCB (Supplement of Bioinformatics) 2007: 72-79
7	EE	Tomas Babak, Benjamin J. Blencowe, Timothy R. Hughes: Considerations in the identification of functional RNA structural elements in genomic alignments. BMC Bioinformatics 8: (2007)
	2006
6	EE	Brendan J. Frey, Quaid Morris, Timothy R. Hughes: GenRate: A Generative Model that Reveals Novel Transcripts in Genome-Tiling Microarray Data. Journal of Computational Biology 13(2): 200-214 (2006)
	2005
5	EE	Jim C. Huang, Quaid Morris, Timothy R. Hughes, Brendan J. Frey: GenXHC: a probabilistic generative model for cross-hybridization compensation in high-density genome-wide microarray data. ISMB (Supplement of Bioinformatics) 2005: 222-231
4	EE	Brendan J. Frey, Quaid Morris, Wen Zhang, Naveed Mohammad, Timothy R. Hughes: GenRate: A Generative Model That Finds and Scores New Genes and Exons in Genomic Microarray Data. Pacific Symposium on Biocomputing 2005
3	EE	Brendan J. Frey, Quaid Morris, Mark D. Robinson, Timothy R. Hughes: Finding Novel Transcripts in High-Resolution Genome-Wide Microarray Data Using the GenRate Model. RECOMB 2005: 66-82
	2004
2	EE	Kimberly N. Lewis, Mark D. Robinson, Timothy R. Hughes, Christopher W. V. Hogue: MyMed: A database system for biomedical research on MEDLINE data. IBM Systems Journal 43(4): 756- (2004)
	2002
1	EE	Mark D. Robinson, Jörg Grigull, Naveed Mohammad, Timothy R. Hughes: FunSpec: a web-based cluster interpreter for yeast. BMC Bioinformatics 3: 35 (2002)

Coauthor Index

1	Trevis M. Alleyne	[10]
2	Tomas Babak	[7]
3	Gwenael Badis	[10]
4	Michael F. Berger	[10]
5	Benjamin J. Blencowe	[7]
6	Michael Brudno	[9]
7	Martha L. Bulyk	[10]
8	Lourdes Peña Castillo	[10]
9	Esther Chan	[9]
10	Xiaoyu Chen	[8]
11	Brendan J. Frey	[3] [4] [5] [6]
12	Andrew R. Gehrke	[10]
13	Jörg Grigull	[1]
14	Christopher W. V. Hogue	[2]
15	Jim C. Huang	[5]
16	Kimberly N. Lewis	[2]
17	Naveed Mohammad	[1] [4]
18	Quaid Morris	[3] [4] [5] [6] [8] [9] [10]
19	Anthony A. Philippakis	[10]
20	Gerald Quon	[9]
21	Mark D. Robinson	[1] [2] [3]
22	Shaheynoor Talukder	[10]
23	Yee Whye Teh	[9]
24	Wen Zhang	[4]