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*2009
11EEErik Kristiansson, Philip Hugenholtz, Daniel Dalevi: ShotgunFunctionalizeR: an R-package for functional comparison of metagenomes. Bioinformatics 25(20): 2737-2738 (2009)
2008
10EEDaniel Dalevi, Natalia Ivanova, Konstantinos Mavrommatis, Sean D. Hooper, Ernest Szeto, Philip Hugenholtz, Nikos Kyrpides, Victor M. Markowitz: Annotation of metagenome short reads using proxygenes. ECCB 2008: 7-13
9EEVictor M. Markowitz, Natalia Ivanova, Ernest Szeto, Krishna Palaniappan, Ken Chu, Daniel Dalevi, I-Min A. Chen, Yuri Grechkin, Inna Dubchak, Iain Anderson, Athanasios Lykidis, Konstantinos Mavrommatis, Philip Hugenholtz, Nikos Kyrpides: IMG/M: a data management and analysis system for metagenomes. Nucleic Acids Research 36(Database-Issue): 534-538 (2008)
2007
8EEDaniel Dalevi, Todd Z. DeSantis, Jakob Fredslund, Gary L. Andersen, Victor M. Markowitz, Philip Hugenholtz: Automated group assignment in large phylogenetic trees using GRUNT: GRouping, Ungrouping, Naming Tool. BMC Bioinformatics 8: (2007)
7EECharles Bland, Teresa L. Ramsey, Fareedah Sabree, Micheal Lowe, Kyndall Brown, Nikos Kyrpides, Philip Hugenholtz: CRISPR Recognition Tool (CRT): a tool for automatic detection of clustered regularly interspaced palindromic repeats. BMC Bioinformatics 8: (2007)
2006
6EEVictor M. Markowitz, Natalia Ivanova, Krishna Palaniappan, Ernest Szeto, Frank Korzeniewski, Athanasios Lykidis, Iain Anderson, Konstantinos Mavrommatis, Victor Kunin, Hector Garcia Martin, Inna Dubchak, Philip Hugenholtz, Nikos Kyrpides: An experimental metagenome data management and analysis system. ISMB (Supplement of Bioinformatics) 2006: 359-367
5EEKonstantinos Liolios, Nektarios Tavernarakis, Philip Hugenholtz, Nikos Kyrpides: The Genomes On Line Database (GOLD) v.2: a monitor of genome projects worldwide. Nucleic Acids Research 34(Database-Issue): 332-334 (2006)
4EEVictor M. Markowitz, Frank Korzeniewski, Krishna Palaniappan, Ernest Szeto, Greg Werner, Anu Padki, Xueling Zhao, Inna Dubchak, Philip Hugenholtz, Iain Anderson, Athanasios Lykidis, Konstantinos Mavrommatis, Natalia Ivanova, Nikos Kyrpides: The integrated microbial genomes (IMG) system. Nucleic Acids Research 34(Database-Issue): 344-348 (2006)
3EET. Z. DeSantis Jr., Philip Hugenholtz, K. Keller, E. L. Brodie, N. Larsen, Y. M. Piceno, R. Phan, Gary L. Andersen: NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes. Nucleic Acids Research 34(Web-Server-Issue): 394-399 (2006)
2005
2EENameeta Shah, Michael V. Teplitsky, Simon Minovitsky, Len A. Pennacchio, Philip Hugenholtz, Bernd Hamann, Inna Dubchak: SNP-VISTA: An interactive SNP visualization tool. BMC Bioinformatics 6: 292 (2005)
2004
1EEThomas Huber, Geoffrey Faulkner, Philip Hugenholtz: Bellerophon: a program to detect chimeric sequences in multiple sequence alignments. Bioinformatics 20(14): 2317-2319 (2004)

Coauthor Index

1Gary L. Andersen [3] [8]
2Iain Anderson [4] [6] [9]
3Charles Bland [7]
4E. L. Brodie [3]
5Kyndall Brown [7]
6I-Min A. Chen [9]
7Ken Chu [9]
8Daniel Dalevi [8] [9] [10] [11]
9Todd Z. DeSantis [8]
10T. Z. DeSantis Jr. [3]
11Inna Dubchak [2] [4] [6] [9]
12Geoffrey Faulkner [1]
13Jakob Fredslund [8]
14Yuri Grechkin [9]
15Bernd Hamann [2]
16Sean D. Hooper [10]
17Thomas Huber [1]
18Natalia Ivanova [4] [6] [9] [10]
19K. Keller [3]
20Frank Korzeniewski [4] [6]
21Erik Kristiansson [11]
22Victor Kunin [6]
23Nikos Kyrpides [4] [5] [6] [7] [9] [10]
24N. Larsen [3]
25Konstantinos Liolios [5]
26Micheal Lowe [7]
27Athanasios Lykidis [4] [6] [9]
28Victor M. Markowitz [4] [6] [8] [9] [10]
29Hector Garcia Martin [6]
30Konstantinos Mavrommatis [4] [6] [9] [10]
31Simon Minovitsky [2]
32Anu Padki [4]
33Krishna Palaniappan [4] [6] [9]
34Len A. Pennacchio [2]
35R. Phan [3]
36Y. M. Piceno [3]
37Teresa L. Ramsey [7]
38Fareedah Sabree [7]
39Nameeta Shah [2]
40Ernest Szeto [4] [6] [9] [10]
41Nektarios Tavernarakis [5]
42Michael V. Teplitsky [2]
43Greg Werner [4]
44Xueling Zhao [4]

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Copyright © Tue Nov 3 08:52:44 2009 by Michael Ley (ley@uni-trier.de)