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Hsien-Da Huang Vis

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*2009
40EELi-Ching Wu, Hsien-Da Huang, Yu-Chung Chang, Ying-Chun Lee, Jorng-Tzong Horng: Detecting LTR structures in human genomic sequences using profile hidden Markov models. Expert Syst. Appl. 36(1): 668-674 (2009)
39EELi-Cheng Wu, Jian-Xin Lee, Hsien-Da Huang, Baw-Juine Liu, Jorng-Tzong Horng: An expert system to predict protein thermostability using decision tree. Expert Syst. Appl. 36(5): 9007-9014 (2009)
38EEDray-Ming Shien, Tzong-Yi Lee, Wen-Chi Chang, Justin Bo-Kai Hsu, Jorng-Tzong Horng, Po-Chiang Hsu, Ting-Yuan Wang, Hsien-Da Huang: Incorporating structural characteristics for identification of protein methylation sites. Journal of Computational Chemistry 30(9): 1532-1543 (2009)
37EEHsi-Yuan Huang, Heng-Yi Chang, Chih-Hung Chou, Ching-Ping Tseng, Shinn-Ying Ho, Chi-Dung Yang, Yih-Wei Ju, Hsien-Da Huang: sRNAMap: genomic maps for small non-coding RNAs, their regulators and their targets in microbial genomes. Nucleic Acids Research 37(Database-Issue): 150-154 (2009)
36EEChih-Hung Chou, Wen-Chi Chang, Chih-Min Chiu, Chih-Chang Huang, Hsien-Da Huang: FMM: a web server for metabolic pathway reconstruction and comparative analysis. Nucleic Acids Research 37(Web-Server-Issue): 129-134 (2009)
2008
35EELi-Ching Wu, Jorng-Tzong Horng, Hsien-Da Huang, Wei-Long Chen: Identifying Discriminative Amino Acids Within the Hemagglutinin of Human Influenza A H5N1 Virus Using a Decision Tree. IEEE Transactions on Information Technology in Biomedicine 12(6): 689-695 (2008)
34EESheng-Da Hsu, Chia-Huei Chu, Ann-Ping Tsou, Shu-Jen Chen, Hua-Chien Chen, Paul Wei-Che Hsu, Yung-Hao Wong, Yi-Hsuan Chen, Gian-Hung Chen, Hsien-Da Huang: miRNAMap 2.0: genomic maps of microRNAs in metazoan genomes. Nucleic Acids Research 36(Database-Issue): 165-169 (2008)
33EETzu-Hao Chang, Jorng-Tzong Horng, Hsien-Da Huang: RNALogo: a new approach to display structural RNA alignment. Nucleic Acids Research 36(Web-Server-Issue): 91-96 (2008)
2007
32EEPaul Wei-Che Hsu, Li-Zen Lin, Sheng-Da Hsu, Justin Bo-Kai Hsu, Hsien-Da Huang: ViTa: prediction of host microRNAs targets on viruses. Nucleic Acids Research 35(Database-Issue): 381-385 (2007)
31EEYung-Hao Wong, Tzong-Yi Lee, Han-Kuen Liang, Chia-Mao Huang, Ting-Yuan Wang, Yi-Huan Yang, Chia-Huei Chu, Hsien-Da Huang, Ming-Tat Ko, Jenn-Kang Hwang: KinasePhos 2.0: a web server for identifying protein kinase-specific phosphorylation sites based on sequences and coupling patterns. Nucleic Acids Research 35(Web-Server-Issue): 588-594 (2007)
30EELi-Cheng Wu, Jorng-Tzong Horng, Hsi-Yuan Huang, Feng-Mao Lin, Hsien-Da Huang, Meng-Feng Tsai: Primer design for multiplex PCR using a genetic algorithm. Soft Comput. 11(9): 855-863 (2007)
2006
29EEAnn-Ping Tsou, Yi-Ming Sun, C.-L. Liu, Hsien-Da Huang, Jorng-Tzong Horng, Meng-Feng Tsai, Baw-Jhiune Liu: Biological Data Warehousing System for Identifying Transcriptional Regulatory Sites From Gene Expressions of Microarray Data. IEEE Transactions on Information Technology in Biomedicine 10(3): 550-558 (2006)
28EEF.-M. Lin, Hsien-Da Huang, Y.-C. Chang, Ann-Ping Tsou, P.-L. Chan, L.-C. Wu, Meng-Feng Tsai, Jorng-Tzong Horng: Database to Dynamically Aid Probe Design for Virus Identification. IEEE Transactions on Information Technology in Biomedicine 10(4): 705-713 (2006)
27EELi-Cheng Wu, Jorng-Tzong Horng, Shir-Ly Huang, Hsien-Da Huang, Baw-Jhiune Liu: Detection of discriminative sequence motifs in proteins obtained from prokaryotes grown at various temperatures. Journal of Computational Chemistry 27(6): 798-808 (2006)
26EETzong-Yi Lee, Jorng-Tzong Horng, Hsueh-Fen Juan, Hsien-Da Huang, Li-Cheng Wu, Meng-Feng Tsai, Hsuan-Cheng Huang: An agent-based system to discover protein-protein interactions, identify protein complexes and proteins with multiple peptide mass fingerprints. Journal of Computational Chemistry 27(9): 1020-1032 (2006)
25EEPaul Wei-Che Hsu, Hsien-Da Huang, Sheng-Da Hsu, Li-Zen Lin, Ann-Ping Tsou, Ching-Ping Tseng, Peter F. Stadler, Stefan Washietl, Ivo L. Hofacker: miRNAMap: genomic maps of microRNA genes and their target genes in mammalian genomes. Nucleic Acids Research 34(Database-Issue): 135-139 (2006)
24EETzong-Yi Lee, Hsien-Da Huang, Jui-Hung Hung, Hsi-Yuan Huang, Yuh-Shyong Yang, Tzu-Hao Wang: dbPTM: an information repository of protein post-translational modification. Nucleic Acids Research 34(Database-Issue): 622-627 (2006)
23EETzu-Hao Chang, Hsien-Da Huang, Tzu-Neng Chuang, Dray-Ming Shien, Jorng-Tzong Horng: RNAMST: efficient and flexible approach for identifying RNA structural homologs. Nucleic Acids Research 34(Web-Server-Issue): 423-428 (2006)
22EEHsi-Yuan Huang, Chia-Hung Chien, Kuan-Hua Jen, Hsien-Da Huang: RegRNA: an integrated web server for identifying regulatory RNA motifs and elements. Nucleic Acids Research 34(Web-Server-Issue): 429-434 (2006)
21EEJui-Hung Hung, Hsien-Da Huang, Tzong-Yi Lee: ProKware: integrated software for presenting protein structural properties in protein tertiary structures. Nucleic Acids Research 34(Web-Server-Issue): 89-94 (2006)
2005
20EEFeng-Mao Lin, Hsien-Da Huang, Yu-Chung Chang, Pak-Leong Chan, Jorng-Tzong Horng, Ming-Tat Ko: A database to aid probe design for virus identification. APBC 2005: 309-318
19EEFeng-Mao Lin, Hsien-Da Huang, Hsi-Yuan Huang, Jorng-Tzong Horng: Primer design for multiplex PCR using a genetic algorithm. GECCO 2005: 475-476
18EEHsien-Da Huang, Jorng-Tzong Horng, Li-Cheng Wu, Shu-Fen Fang: Discovering Common Structural Motifs of Ribosomal Rna Secondary Structures in Prokaryotes. International Journal on Artificial Intelligence Tools 14(4): 621-640 (2005)
17EEHsien-Da Huang, Tzong-Yi Lee, Shih-Wei Tzeng, Li-Cheng Wu, Jorng-Tzong Horng, Ann-Ping Tsou, Kuan-Tsae Huang: Incorporating hidden Markov models for identifying protein kinase-specific phosphorylation sites. Journal of Computational Chemistry 26(10): 1032-1041 (2005)
16EEHsien-Da Huang, Jorng-Tzong Horng, Feng-Mao Lin, Yu-Chung Chang, Chen-Chia Huang: SpliceInfo: an information repository for mRNA alternative splicing in human genome. Nucleic Acids Research 33(Database-Issue): 80-85 (2005)
15EEHsien-Da Huang, Tzong-Yi Lee, Shih-Wei Tzeng, Jorng-Tzong Horng: KinasePhos: a web tool for identifying protein kinase-specific phosphorylation sites. Nucleic Acids Research 33(Web-Server-Issue): 226-229 (2005)
2004
14EEJorng-Tzong Horng, Kai-Chih Hu, Li-Cheng Wu, Hsien-Da Huang, Horn-Cheng Lai, Ton-Yuen Chu: Identifying the Combination of Genetic Factors that Determine Susceptibility to Cervical Cancer. BIBE 2004: 325-332
13EEYi-Ming Sun, Hsien-Da Huang, Jorng-Tzong Horng, Shir-Ly Huang, Ann-Ping Tsou: RgS-Miner: A Biological Data Warehousing, Analyzing and Mining System for Identifying Transcriptional Regulatory Sites in Human Genome. DEXA 2004: 751-760
12EEHsien-Da Huang, Jorng-Tzong Horng, Yi-Ming Sun, Ann-Ping Tsou, Shir-Ly Huang: Identifying Transcriptional Regulatory Sites in the Human Genome Using an Integrated Computation. ISPAN 2004: 637-642
11 Jorng-Tzong Horng, Kai-Chih Hu, Li-Cheng Wu, Hsien-Da Huang, Feng-Mao Lin, Shir-Ly Huang, Horn-Cheng Lai, Ton-Yuen Chu: Identifying the combination of genetic factors that determine susceptibility to cervical cancer. IEEE Transactions on Information Technology in Biomedicine 8(1): 59-66 (2004)
10EEHsien-Da Huang, Jorng-Tzong Horng, Chia-Hui Chang, Tsung-Shan Tsou, Jing-Yue Hong, Baw-Jhiune Liu: A Computational Approach to Discover Differential Cooperation of Regulartory Sites in Functionally Related Genes in Yeast Genome. J. Inf. Sci. Eng. 20(6): 1141-1159 (2004)
2003
9EEHsien-Da Huang, Huei-Lin Chang, Tsung-Shan Tsou, Baw-Jhiune Liu, Cheng-Yan Kao, Jorng-Tzong Horng: A Data Mining Method to Predict Transcriptional Regulatory Sites Based on Differentially Expressed Genes in Human Genome. BIBE 2003: 297-304
8 Jorng-Tzong Horng, Feng-Mao Lin, J. H. Lin, Hsien-Da Huang, Baw-Jhiune Liu: Database of repetitive elements in complete genomes and data mining using transcription factor binding sites. IEEE Transactions on Information Technology in Biomedicine 7(2): 93-100 (2003)
7EEHsien-Da Huang, Huei-Lin Chang, Tsung-Shan Tsou, Baw-Jhiune Liu, Jorng-Tzong Horng: A Data Mining Method to Predict Transcriptional Regulatory Sites Based Based on Differentially Expressed Genes in Human Genome. J. Inf. Sci. Eng. 19(6): 923-942 (2003)
6EEJorng-Tzong Horng, Hsien-Da Huang, Shih-Hsien Wang, Ming-You Chen, Shir-Ly Huang, Jenn-Kang Hwang: Computing motif correlations in proteins. Journal of Computational Chemistry 24(16): 2032-2043 (2003)
2002
5EEJorng-Tzong Horng, Hsien-Da Huang, Shir-Ly Huang, Ueng-Cheng Yang, Yu-Chang Chang: Mining putative regulatory elements in gene promoter regions of Saccharomyces cerevisiae. In Silico Biology 2: 25 (2002)
4 Jorng-Tzong Horng, Hsien-Da Huang, Ming-Hui Jin, Li-Cheng Wu, Shir-Ly Huang: The Repetitive Sequence Database and Mining Putative Regulatory Elements in Gene Promoter Regions. Journal of Computational Biology 9(4): 621-640 (2002)
2001
3 Hsien-Da Huang, Shu-Fen Fang, Jorng-Tzong Horng, Cheng-Yan Kao: Discovering Common Structural Motifs from SSU 16 S Ribosomal RNA Secondary Structures. BIBE 2001: 104-111
2 Hsien-Da Huang, Shu-Fen Fang, Jorng-Tzong Horng: Mining Combinations of Structural Motif from SSU 16 S Ribosomal RNA Secondary Structures. German Conference on Bioinformatics 2001: 170-173
1 Jorng-Tzong Horng, Hsien-Da Huang, Cho-Chun Huang, Cheng-Yan Kao: Mining Putative Regulatory Elements in Gene Promoter Regions. German Conference on Bioinformatics 2001: 90-95

Coauthor Index

1P.-L. Chan [28]
2Pak-Leong Chan [20]
3Chia-Hui Chang [10]
4Heng-Yi Chang [37]
5Huei-Lin Chang [7] [9]
6Tzu-Hao Chang [23] [33]
7Wen-Chi Chang [36] [38]
8Y.-C. Chang [28]
9Yu-Chang Chang [5]
10Yu-Chung Chang [16] [20] [40]
11Gian-Hung Chen [34]
12Hua-Chien Chen [34]
13Ming-You Chen [6]
14Shu-Jen Chen [34]
15Wei-Long Chen [35]
16Yi-Hsuan Chen [34]
17Chia-Hung Chien [22]
18Chih-Min Chiu [36]
19Chih-Hung Chou [36] [37]
20Chia-Huei Chu [31] [34]
21Ton-Yuen Chu [11] [14]
22Tzu-Neng Chuang [23]
23Shu-Fen Fang [2] [3] [18]
24Shinn-Ying Ho [37]
25Ivo L. Hofacker [25]
26Jing-Yue Hong [10]
27Jorng-Tzong Horng [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [23] [26] [27] [28] [29] [30] [33] [35] [38] [39] [40]
28Justin Bo-Kai Hsu [32] [38]
29Paul Wei-Che Hsu [25] [32] [34]
30Po-Chiang Hsu [38]
31Sheng-Da Hsu [25] [32] [34]
32Kai-Chih Hu [11] [14]
33Chen-Chia Huang [16]
34Chia-Mao Huang [31]
35Chih-Chang Huang [36]
36Cho-Chun Huang [1]
37Hsi-Yuan Huang [19] [22] [24] [30] [37]
38Hsuan-Cheng Huang [26]
39Kuan-Tsae Huang [17]
40Shir-Ly Huang [4] [5] [6] [11] [12] [13] [27]
41Jui-Hung Hung [21] [24]
42Jenn-Kang Hwang [6] [31]
43Kuan-Hua Jen [22]
44Ming-Hui Jin [4]
45Yih-Wei Ju [37]
46Hsueh-Fen Juan [26]
47Cheng-Yan Kao [1] [3] [9]
48Ming-Tat Ko [20] [31]
49Horn-Cheng Lai [11] [14]
50Jian-Xin Lee [39]
51Tzong-Yi Lee [15] [17] [21] [24] [26] [31] [38]
52Ying-Chun Lee [40]
53Han-Kuen Liang [31]
54F.-M. Lin [28]
55Feng-Mao Lin [8] [11] [16] [19] [20] [30]
56J. H. Lin [8]
57Li-Zen Lin [25] [32]
58Baw-Jhiune Liu [7] [8] [9] [10] [27] [29]
59Baw-Juine Liu [39]
60C.-L. Liu [29]
61Dray-Ming Shien [23] [38]
62Peter F. Stadler [25]
63Yi-Ming Sun [12] [13] [29]
64Meng-Feng Tsai [26] [28] [29] [30]
65Ching-Ping Tseng [25] [37]
66Ann-Ping Tsou [12] [13] [17] [25] [28] [29] [34]
67Tsung-Shan Tsou [7] [9] [10]
68Shih-Wei Tzeng [15] [17]
69Shih-Hsien Wang [6]
70Ting-Yuan Wang [31] [38]
71Tzu-Hao Wang [24]
72Stefan Washietl [25]
73Yung-Hao Wong [31] [34]
74L.-C. Wu [28]
75Li-Cheng Wu [4] [11] [14] [17] [18] [26] [27] [30] [39]
76Li-Ching Wu [35] [40]
77Chi-Dung Yang [37]
78Ueng-Cheng Yang [5]
79Yi-Huan Yang [31]
80Yuh-Shyong Yang [24]

Copyright © Tue Nov 3 08:52:44 2009 by Michael Ley (ley@uni-trier.de)