Jacques van Helden Vis

*	2009
21	EE	Kevin Kontos, Bruno André, Jacques van Helden, Gianluca Bontempi: Gaussian Graphical Models to Infer Putative Genes Involved in Nitrogen Catabolite Repression in S. cerevisiae. EvoBIO 2009: 13-24
20	EE	Matthieu Defrance, Jacques van Helden: info-gibbs: a motif discovery algorithm that directly optimizes information content during sampling. Bioinformatics 25(20): 2715-2722 (2009)
19	EE	Olivier Sand, Morgane Thomas-Chollier, Jacques van Helden: Retrieve-ensembl-seq: user-friendly and large-scale retrieval of single or multi-genome sequences from Ensembl. Bioinformatics 25(20): 2739-2740 (2009)
	2008
18	EE	Rekin's Janky, Jacques van Helden: Evaluation of phylogenetic footprint discovery for predicting bacterial cis-regulatory elements and revealing their evolution. BMC Bioinformatics 9: (2008)
17	EE	Gipsi Lima-Mendez, Jacques van Helden, Ariane Toussaint, Raphaël Leplae: Prophinder: a computational tool for prophage prediction in prokaryotic genomes. Bioinformatics 24(6): 863-865 (2008)
16	EE	Morgane Thomas-Chollier, Olivier Sand, Jean-Valéry Turatsinze, Rekin's Janky, Matthieu Defrance, Eric Vervisch, Sylvain Brohée, Jacques van Helden: RSAT: regulatory sequence analysis tools. Nucleic Acids Research 36(Web-Server-Issue): 119-127 (2008)
15	EE	Sylvain Brohée, Karoline Faust, Gipsi Lima-Mendez, Olivier Sand, Rekin's Janky, Gilles Vanderstocken, Yves Deville, Jacques van Helden: NeAT: a toolbox for the analysis of biological networks, clusters, classes and pathways. Nucleic Acids Research 36(Web-Server-Issue): 444-451 (2008)
	2007
14	EE	Najib Naamane, Jacques van Helden, Decio L. Eizirik: In silico identification of NF-kappaB-regulated genes in pancreatic beta-cells. BMC Bioinformatics 8: (2007)
	2005
13	EE	Didier Gonze, Sylvie Pinloche, Olivier Gascuel, Jacques van Helden: Discrimination of yeast genes involved in methionine and phosphate metabolism on the basis of upstream motifs. Bioinformatics 21(17): 3490-3500 (2005)
12	EE	Ulrich Güldener, Martin Münsterkötter, Gabi Kastenmüller, Normann Strack, Jacques van Helden, Christian Lemer, J. Richelles, Shoshana J. Wodak, J. García-Martínez, J. E. Pérez-Ortín, Holger Michael, Andreas Kaps, E. Talla, Bernard Dujon, Bruno André, J. L. Souciet, J. De Montigny, E. Bon, C. Gaillardin, Hans-Werner Mewes: CYGD: the Comprehensive Yeast Genome Database. Nucleic Acids Research 33(Database-Issue): 364-368 (2005)
11	EE	Didier Croes, Fabian Couche, Shoshana J. Wodak, Jacques van Helden: Metabolic PathFinding: inferring relevant pathways in biochemical networks. Nucleic Acids Research 33(Web-Server-Issue): 326-330 (2005)
	2004
10	EE	N. Simonis, Shoshana J. Wodak, G. N. Cohen, Jacques van Helden: Combining pattern discovery and discriminant analysis to predict gene co-regulation. Bioinformatics 20(15): 2370-2379 (2004)
9	EE	Jacques van Helden: Metrics for comparing regulatory sequences on the basis of pattern counts. Bioinformatics 20(3): 399-406 (2004)
	2003
8	EE	Yves Deville, David Gilbert, Jacques van Helden, Shoshana J. Wodak: An Overview of Data Models for the Analysis of Biochemical Pathways. CMSB 2003: 174
7		Yves Deville, David Gilbert, Jacques van Helden, Shoshana J. Wodak: An overview of data models for the analysis of biochemical pathways. Briefings in Bioinformatics 4(3): 246-259 (2003)
6		Jacques van Helden: Regulatory Sequence Analysis Tools. Nucleic Acids Research 31(13): 3593-3596 (2003)
	2001
5		Jacques van Helden, Avi Naim, Christian Lemer, Renato Mancuso, Matthew Eldridge, Shoshana J. Wodak: From Molecular Activities and Processes to Biological Function. Briefings in Bioinformatics 2(1): 81-107 (2001)
4		Michael Schroeder, David Gilbert, Jacques van Helden, Penny Noy: Approaches to visualisation in bioinformatics: from dendrograms to Space Explorer. Inf. Sci. 139(1-2): 19-57 (2001)
	2000
3	EE	Jacques van Helden, David Gilbert, Lorenz Wernisch, Michael Schroeder, Shoshana J. Wodak: Application of Regulatory Sequence Analysis and Metabolic Network Analysis to the Interpretation of Gene Expression Data. JOBIM 2000: 147-164
	1999
2		Jacques van Helden, David Gilbert, Lorenz Wernisch, Renato Mancuso, Matthew Eldridge, Kirill Degtyarenko, Shoshana J. Wodak: Logical Tools for Quering and Assisting Annotation of a Biochemical Pathway Database. German Conference on Bioinformatics 1999: 227-229
1		Heladia Salgado, Alberto Santos-Zavaleta, Ulises Garza-Ramos, Jacques van Helden, Edgar Díaz-Peredo, Julio Collado-Vides: RegulonDB (version 2.0): a database on transcriptional regulation in Escherichia coli. Nucleic Acids Research 27(1): 59-60 (1999)

Coauthor Index

1	Bruno André	[12] [21]
2	E. Bon	[12]
3	Gianluca Bontempi	[21]
4	Sylvain Brohée	[15] [16]
5	G. N. Cohen	[10]
6	Julio Collado-Vides	[1]
7	Fabian Couche	[11]
8	Didier Croes	[11]
9	Matthieu Defrance	[16] [20]
10	Kirill Degtyarenko	[2]
11	Yves Deville	[7] [8] [15]
12	Edgar Díaz-Peredo	[1]
13	Bernard Dujon	[12]
14	Decio L. Eizirik	[14]
15	Matthew Eldridge	[2] [5]
16	Karoline Faust	[15]
17	C. Gaillardin	[12]
18	J. García-Martínez	[12]
19	Ulises Garza-Ramos	[1]
20	Olivier Gascuel	[13]
21	David Gilbert (David R. Gilbert)	[2] [3] [4] [7] [8]
22	Didier Gonze	[13]
23	Ulrich Güldener	[12]
24	Rekin's Janky	[15] [16] [18]
25	Andreas Kaps	[12]
26	Gabi Kastenmüller	[12]
27	Kevin Kontos	[21]
28	Christian Lemer	[5] [12]
29	Raphaël Leplae	[17]
30	Gipsi Lima-Mendez	[15] [17]
31	Renato Mancuso	[2] [5]
32	Hans-Werner Mewes	[12]
33	Holger Michael	[12]
34	J. De Montigny	[12]
35	Martin Münsterkötter	[12]
36	Najib Naamane	[14]
37	Avi Naim	[5]
38	Penny Noy	[4]
39	J. E. Pérez-Ortín	[12]
40	Sylvie Pinloche	[13]
41	J. Richelles	[12]
42	Heladia Salgado	[1]
43	Olivier Sand	[15] [16] [19]
44	Alberto Santos-Zavaleta	[1]
45	Michael Schroeder	[3] [4]
46	N. Simonis	[10]
47	J. L. Souciet	[12]
48	Normann Strack	[12]
49	E. Talla	[12]
50	Morgane Thomas-Chollier	[16] [19]
51	Ariane Toussaint	[17]
52	Jean-Valéry Turatsinze	[16]
53	Gilles Vanderstocken	[15]
54	Eric Vervisch	[16]
55	Lorenz Wernisch	[2] [3]
56	Shoshana J. Wodak	[2] [3] [5] [7] [8] [10] [11] [12]

Colors in the list of coauthors