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Nick V. Grishin Vis

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*2009
26EERuslan Sadreyev, Shuoyong Shi, David Baker, Nick V. Grishin: Structure similarity measure with penalty for close non-equivalent residues. Bioinformatics 25(10): 1259-1263 (2009)
25EEYong Wang, Ruslan Sadreyev, Nick V. Grishin: PROCAIN server for remote protein sequence similarity search. Bioinformatics 25(16): 2076-2077 (2009)
24EEShuoyong Shi, Bhadrachalam Chitturi, Nick V. Grishin: ProSMoS server: a pattern-based search using interaction matrix representation of protein structures. Nucleic Acids Research 37(Web-Server-Issue): 526-531 (2009)
23EEBong-Hyun Kim, Hua Cheng, Nick V. Grishin: HorA web server to infer homology between proteins using sequence and structural similarity. Nucleic Acids Research 37(Web-Server-Issue): 532-538 (2009)
22EERuslan Sadreyev, Ming Tang, Bong-Hyun Kim, Nick V. Grishin: COMPASS server for homology detection: improved statistical accuracy, speed and functionality. Nucleic Acids Research 37(Web-Server-Issue): 90-94 (2009)
2008
21EEJames O. Wrabl, Nick V. Grishin: Statistics of Random Protein Superpositions: p-Values for Pairwise Structure Alignment. Journal of Computational Biology 15(3): 317-355 (2008)
20EEHua Cheng, Bong-Hyun Kim, Nick V. Grishin: MALISAM: a database of structurally analogous motifs in proteins. Nucleic Acids Research 36(Database-Issue): 211-217 (2008)
19EEJimin Pei, Ming Tang, Nick V. Grishin: PROMALS3D web server for accurate multiple protein sequence and structure alignments. Nucleic Acids Research 36(Web-Server-Issue): 30-34 (2008)
2007
18EEYuan Qi, Ruslan Sadreyev, Yong Wang, Bong-Hyun Kim, Nick V. Grishin: A comprehensive system for evaluation of remote sequence similarity detection. BMC Bioinformatics 8: (2007)
17EEShuoyong Shi, Yi Zhong, Indraneel Majumdar, S. Sri Krishna, Nick V. Grishin: Searching for three-dimensional secondary structural patterns in proteins with ProSMoS. Bioinformatics 23(11): 1331-1338 (2007)
16EEJimin Pei, Nick V. Grishin: PROMALS: towards accurate multiple sequence alignments of distantly related proteins. Bioinformatics 23(7): 802-808 (2007)
15EEJimin Pei, Bong-Hyun Kim, Ming Tang, Nick V. Grishin: PROMALS web server for accurate multiple protein sequence alignments. Nucleic Acids Research 35(Web-Server-Issue): 649-652 (2007)
14EERuslan Sadreyev, Ming Tang, Bong-Hyun Kim, Nick V. Grishin: COMPASS server for remote homology inference. Nucleic Acids Research 35(Web-Server-Issue): 653-658 (2007)
2006
13EEJimin Pei, Wei Cai, Lisa N. Kinch, Nick V. Grishin: Prediction of functional specificity determinants from protein sequences using log-likelihood ratios. Bioinformatics 22(2): 164-171 (2006)
12EEKira S. Makarova, Nick V. Grishin, Eugene V. Koonin: The HicAB cassette, a putative novel, RNA-targeting toxin-antitoxin system in archaea and bacteria. Bioinformatics 22(21): 2581-2584 (2006)
2005
11EEIndraneel Majumdar, S. Sri Krishna, Nick V. Grishin: PALSSE: A program to delineate linear secondary structural elements from protein structures. BMC Bioinformatics 6: 202 (2005)
10EES. Sri Krishna, Nick V. Grishin: Structural drift: a possible path to protein fold change. Bioinformatics 21(8): 1308-1310 (2005)
2004
9EERuslan Sadreyev, Nick V. Grishin: Estimates of statistical significance for comparison of individual positions in multiple sequence alignments. BMC Bioinformatics 5: 106 (2004)
8EESara Cheek, Yuan Qi, S. Sri Krishna, Lisa N. Kinch, Nick V. Grishin: SCOPmap: Automated assignment of protein structures to evolutionary superfamilies. BMC Bioinformatics 5: 197 (2004)
7EEYuan Qi, Nick V. Grishin: PCOAT: positional correlation analysis using multiple methods. Bioinformatics 20(18): 3697-3699 (2004)
6EERuslan Sadreyev, Nick V. Grishin: Quality of alignment comparison by COMPASS improves with inclusion of diverse confident homologs. Bioinformatics 20(6): 818-828 (2004)
5 Krzysztof Ginalski, Marcin von Grotthuss, Nick V. Grishin, Leszek Rychlewski: Detecting distant homology with Meta-BASIC. Nucleic Acids Research 32(Web-Server-Issue): 576-581 (2004)
2003
4 David Mittelman, Ruslan Sadreyev, Nick V. Grishin: Probabilistic scoring measures for profile-profile comparison yield more accurate short seed alignments. Bioinformatics 19(12): 1531-1539 (2003)
3 Jimin Pei, Ruslan Sadreyev, Nick V. Grishin: PCMA: fast and accurate multiple sequence alignment based on profile consistency. Bioinformatics 19(3): 427-428 (2003)
2002
2 Vyacheslav N. Grishin, Nick V. Grishin: Euclidian space and grouping of biological objects. Bioinformatics 18(11): 1523-1534 (2002)
2001
1 Jimin Pei, Nick V. Grishin: AL2CO: calculation of positional conservation in a protein sequence alignment. Bioinformatics 17(8): 700-712 (2001)

Coauthor Index

1David Baker [26]
2Wei Cai [13]
3Sara Cheek [8]
4Hua Cheng [20] [23]
5Bhadrachalam Chitturi [24]
6Krzysztof Ginalski [5]
7Vyacheslav N. Grishin [2]
8Marcin von Grotthuss [5]
9Bong-Hyun Kim [14] [15] [18] [20] [22] [23]
10Lisa N. Kinch [8] [13]
11Eugene V. Koonin [12]
12S. Sri Krishna [8] [10] [11] [17]
13Indraneel Majumdar [11] [17]
14Kira S. Makarova [12]
15David Mittelman [4]
16Jimin Pei [1] [3] [13] [15] [16] [19]
17Yuan Qi [7] [8] [18]
18Leszek Rychlewski [5]
19Ruslan Sadreyev [3] [4] [6] [9] [14] [18] [22] [25] [26]
20Shuoyong Shi [17] [24] [26]
21Ming Tang [14] [15] [19] [22]
22Yong Wang [18] [25]
23James O. Wrabl [21]
24Yi Zhong [17]

Colors in the list of coauthors

Copyright © Tue Nov 3 08:52:44 2009 by Michael Ley (ley@uni-trier.de)