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Takashi Gojobori Vis

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*2009
38EEJosé Carlos Clemente, Kazuho Ikeo, Gabriel Valiente, Takashi Gojobori: Optimized ancestral state reconstruction using Sankoff parsimony. BMC Bioinformatics 10: (2009)
37EEHideaki Sugawara, Kazuho Ikeo, Satoshi Fukuchi, Takashi Gojobori, Yoshio Tateno: DDBJ dealing with mass data produced by the second generation sequencer. Nucleic Acids Research 37(Database-Issue): 16-18 (2009)
36EESatoshi Fukuchi, Keiichi Homma, Shigetaka Sakamoto, Hideaki Sugawara, Yoshio Tateno, Takashi Gojobori, Ken Nishikawa: The GTOP database in 2009: updated content and novel features to expand and deepen insights into protein structures and functions. Nucleic Acids Research 37(Database-Issue): 333-337 (2009)
35EEMakoto K. Shimada, Ryuzou Matsumoto, Yosuke Hayakawa, Ryoko Sanbonmatsu, Craig Gough, Yumi Yamaguchi-Kabata, Chisato Yamasaki, Tadashi Imanishi, Takashi Gojobori: VarySysDB: a human genetic polymorphism database based on all H-InvDB transcripts. Nucleic Acids Research 37(Database-Issue): 810-815 (2009)
2008
34EEHideaki Sugawara, Osamu Ogasawara, Kousaku Okubo, Takashi Gojobori, Yoshio Tateno: DDBJ with new system and face. Nucleic Acids Research 36(Database-Issue): 22-24 (2008)
33EEAkihiro Matsuya, Ryuichi Sakate, Yoshihiro Kawahara, Kanako O. Koyanagi, Yoshiharu Sato, Yasuyuki Fujii, Chisato Yamasaki, Takuya Habara, Hajime Nakaoka, Fusano Todokoro, Kaori Yamaguchi, Toshinori Endo, Satoshi Ota, Wojciech Makalowski, Kazuho Ikeo, Yoshiyuki Suzuki, Kousuke Hanada, Katsuyuki Hashimoto, Momoki Hirai, Hisakazu Iwama, Naruya Saitou, Aiko T. Hiraki, Lihua Jin, Yayoi Kaneko, Masako Kanno, Katsuhiko Murakami, Akiko Ogura Noda, Naomi Saichi, Ryoko Sanbonmatsu, Mami Suzuki, Jun-ichi Takeda, Masayuki Tanaka, Takashi Gojobori, Tadashi Imanishi, Takeshi Itoh: Evola: Ortholog database of all human genes in H-InvDB with manual curation of phylogenetic trees. Nucleic Acids Research 36(Database-Issue): 787-792 (2008)
2007
32EEJun-ichi Takeda, Yutaka Suzuki, Mitsuteru Nakao, Tsuyoshi Kuroda, Sumio Sugano, Takashi Gojobori, Tadashi Imanishi: H-DBAS: Alternative splicing database of completely sequenced and manually annotated full-length cDNAs based on H-Invitational. Nucleic Acids Research 35(Database-Issue): 104-109 (2007)
31EEHideaki Sugawara, Takashi Abe, Takashi Gojobori, Yoshio Tateno: DDBJ working on evaluation and classification of bacterial genes in INSDC. Nucleic Acids Research 35(Database-Issue): 13-15 (2007)
2006
30EEKousaku Okubo, Hideaki Sugawara, Takashi Gojobori, Yoshio Tateno: DDBJ in preparation for overview of research activities behind data submissions. Nucleic Acids Research 34(Database-Issue): 6-9 (2006)
29EEHajime Ohyanagi, Tsuyoshi Tanaka, Hiroaki Sakai, Yasumasa Shigemoto, Kaori Yamaguchi, Takuya Habara, Yasuyuki Fujii, Baltazar A. Antonio, Yoshiaki Nagamura, Tadashi Imanishi, Kazuho Ikeo, Takeshi Itoh, Takashi Gojobori, Takuji Sasaki: The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information. Nucleic Acids Research 34(Database-Issue): 741-744 (2006)
28EEChisato Yamasaki, Hiroaki Kawashima, Fusano Todokoro, Yasuhiro Imamizu, Makoto Ogawa, Motohiko Tanino, Takeshi Itoh, Takashi Gojobori, Tadashi Imanishi: TACT: Transcriptome Auto-annotation Conducting Tool of H-InvDB. Nucleic Acids Research 34(Web-Server-Issue): 345-349 (2006)
2005
27EEYoshio Tateno, Naruya Saitou, Kousaku Okubo, Hideaki Sugawara, Takashi Gojobori: DDBJ in collaboration with mass-sequencing teams on annotation. Nucleic Acids Research 33(Database-Issue): 25-28 (2005)
26EEMotohiko Tanino, Marie-Anne Debily, Takuro Tamura, Teruyoshi Hishiki, Osamu Ogasawara, Katsuji Murakawa, Shoko Kawamoto, Kouichi Itoh, Shinya Watanabe, Sandro José de Souza, Sandrine Imbeaud, Esther Graudens, Eric Eveno, Phillip Hilton, Yukio Sudo, Janet Kelso, Kazuho Ikeo, Tadashi Imanishi, Takashi Gojobori, Charles Auffray, Winston Hide, Kousaku Okubo: The Human Anatomic Gene Expression Library (H-ANGEL), the H-Inv integrative display of human gene expression across disparate technologies and platforms. Nucleic Acids Research 33(Database-Issue): 567-572 (2005)
2004
25 Satoru Miyazaki, Hideaki Sugawara, Kazuho Ikeo, Takashi Gojobori, Yoshio Tateno: DBJ in the stream of various biological data. Nucleic Acids Research 32(Database-Issue): 31-34 (2004)
2003
24 Satoru Miyazaki, Hideaki Sugawara, Takashi Gojobori, Yoshio Tateno: DNA Data Bank of Japan (DDBJ) in XML. Nucleic Acids Research 31(1): 13-16 (2003)
2002
23 Yoshio Tateno, Tadashi Imanishi, Satoru Miyazaki, Kaoru Fukami-Kobayashi, Naruya Saitou, Hideaki Sugawara, Takashi Gojobori: DNA Data Bank of Japan (DDBJ) for genome scale research in life science. Nucleic Acids Research 30(1): 27-30 (2002)
2001
22 Yoshiyuki Suzuki, Takashi Gojobori, Masatoshi Nei: ADAPTSITE: detecting natural selection at single amino acid sites. Bioinformatics 17(7): 660-661 (2001)
2000
21EETakashi Gojobori, T. Daniel Andrews, Takeshi Itoh: Evolutionary features of genomes as disclosed by comparative analysis of complete genome sequences (abstract only). RECOMB 2000: 137
20 Yoshio Tateno, Satoru Miyazaki, Motonori Ota, Hideaki Sugawara, Takashi Gojobori: DNA Data Bank of Japan (DDBJ) in collaboration with mass sequencing teams. Nucleic Acids Research 28(1): 24-26 (2000)
19 Yasukazu Nakamura, Takashi Gojobori, Toshimichi Ikemura: Codon usage tabulated from international DNA sequence databases: status for the year 2000. Nucleic Acids Research 28(1): 292 (2000)
1999
18EEHiroshi Tanaka, Fengrong Ren, Toshitsugu Okayama, Takashi Gojobori: Topology Selection in Unrooted Molecular Phylogenetic Tree By Minimum Model-Based Complexity Method. Pacific Symposium on Biocomputing 1999: 326-337
17 Hideaki Sugawara, Satoru Miyazaki, Takashi Gojobori, Yoshio Tateno: DNA Data Bank of Japan dealing with large-scale data submission. Nucleic Acids Research 27(1): 25-28 (1999)
16 Yasukazu Nakamura, Takashi Gojobori, Toshimichi Ikemura: Codon usage tabulated from the international DNA sequence databases; its status 1999. Nucleic Acids Research 27(1): 292 (1999)
1998
15 Toshitsugu Okayama, Takuro Tamura, Takashi Gojobori, Yoshio Tateno, Kazuho Ikeo, Satoru Miyazaki, Kaoru Fukami-Kobayashi, Hideaki Sugawara: Formal design and implementation of an improved DDBJ DNA database with a new schema and object-oriented library. Bioinformatics 14(6): 472-478 (1998)
14 Yoshio Tateno, Kaoru Fukami-Kobayashi, Satoru Miyazaki, Hideaki Sugawara, Takashi Gojobori: DNA Data Bank of Japan at work on genome sequence data. Nucleic Acids Research 26(1): 16-20 (1998)
13 Yasukazu Nakamura, Takashi Gojobori, Toshimichi Ikemura: Codon usage tabulated from the international DNA sequence databases. Nucleic Acids Research 26(1): 334 (1998)
12 Guy Perrière, Manolo Gouy, Takashi Gojobori: The non-redundant Bacillus subtilis (NRSub) database: update 1998. Nucleic Acids Research 26(1): 60-62 (1998)
1997
11 Fengrong Ren, Hiroshi Tanaka, Toshitsugu Okayama, Takashi Gojobori: Molecular Phylogenetic Trees are Inferred by Using Minimum Model-Based Complexity. BCEC 1997: 122-131
10 Hiroshi Tanaka, Fengrong Ren, Toshitsugu Okayama, Takashi Gojobori: Inference of Molecular Phylogenetic Tree Based on Minimum Model-Based Complexity Method. ISMB 1997: 319-328
9 Yoshio Tateno, Takashi Gojobori: DNA Data Bank of Japan in the age of information biology. Nucleic Acids Research 25(1): 14-17 (1997)
8 Yasukazu Nakamura, Takashi Gojobori, Toshimichi Ikemura: Codon usage tabulated from the international DNA sequence databases. Nucleic Acids Research 25(1): 244-245 (1997)
7 Guy Perrière, Ivan Moszer, Takashi Gojobori: The NRSub database: update 1997. Nucleic Acids Research 25(1): 53-56 (1997)
1996
6 Hajime Kitakami, Yasuma Mori, Yoshio Tateno, Takashi Gojobori: A Biological Taxonomy Database System an World-Wide Web. German Conference on Bioinformatics 1996: 244-246
5 Yasukazu Nakamura, Ken-nosuke Wada, Yoshiko Wada, Hirofumi Doi, Shigehiko Kanaya, Takashi Gojobori, Toshimichi Ikemura: Condon usage tabulated from the international DNA sequence databases. Nucleic Acids Research 24(1): 214-215 (1996)
4 Guy Perrière, Ivan Moszer, Takashi Gojobori: NRSub: a non-redundant database for Bacillus subtilis. Nucleic Acids Research 24(1): 41-45 (1996)
1995
3EEFengrong Ren, Hiroshi Tanaka, Noria Fukuda, Takashi Gojobori: Molecular evolutionary phylogenetic trees based on minimum description length principle. HICSS (5) 1995: 165-173
2EEHajime Kitakami, Tadasu Shin-I, Kazuho Ikeo, Yoshihiro Ugawa, Naruya Saitou, Takashi Gojobori, Yoshio Tateno: YAMATO and ASUKA: DNA database management system. HICSS (5) 1995: 72-80
1994
1 Hajime Kitakami, Yoshio Tateno, Takashi Gojobori: Toward Unification of Taxonomy Databases in a Distributed Environment. ISMB 1994: 227-235

Coauthor Index

1Takashi Abe [31]
2T. Daniel Andrews [21]
3Baltazar A. Antonio [29]
4Charles Auffray [26]
5José Carlos Clemente [38]
6Marie-Anne Debily [26]
7Hirofumi Doi [5]
8Toshinori Endo [33]
9Eric Eveno [26]
10Yasuyuki Fujii [29] [33]
11Kaoru Fukami-Kobayashi [14] [15] [23]
12Satoshi Fukuchi [36] [37]
13Noria Fukuda [3]
14Craig Gough [35]
15Manolo Gouy [12]
16Esther Graudens [26]
17Takuya Habara [29] [33]
18Kousuke Hanada [33]
19Katsuyuki Hashimoto [33]
20Yosuke Hayakawa [35]
21Winston Hide (Winston A. Hide) [26]
22Phillip Hilton [26]
23Momoki Hirai [33]
24Aiko T. Hiraki [33]
25Teruyoshi Hishiki [26]
26Keiichi Homma [36]
27Toshimichi Ikemura [5] [8] [13] [16] [19]
28Kazuho Ikeo [2] [15] [25] [26] [29] [33] [37] [38]
29Yasuhiro Imamizu [28]
30Tadashi Imanishi [23] [26] [28] [29] [32] [33] [35]
31Sandrine Imbeaud [26]
32Kouichi Itoh [26]
33Takeshi Itoh [21] [28] [29] [33]
34Hisakazu Iwama [33]
35Lihua Jin [33]
36Shigehiko Kanaya [5]
37Yayoi Kaneko [33]
38Masako Kanno [33]
39Yoshihiro Kawahara [33]
40Shoko Kawamoto [26]
41Hiroaki Kawashima [28]
42Janet Kelso [26]
43Hajime Kitakami [1] [2] [6]
44Kanako O. Koyanagi [33]
45Tsuyoshi Kuroda [32]
46Wojciech Makalowski [33]
47Ryuzou Matsumoto [35]
48Akihiro Matsuya [33]
49Satoru Miyazaki [14] [15] [17] [20] [23] [24] [25]
50Yasuma Mori [6]
51Ivan Moszer [4] [7]
52Katsuhiko Murakami [33]
53Katsuji Murakawa [26]
54Yoshiaki Nagamura [29]
55Yasukazu Nakamura [5] [8] [13] [16] [19]
56Mitsuteru Nakao [32]
57Hajime Nakaoka [33]
58Masatoshi Nei [22]
59Ken Nishikawa [36]
60Akiko Ogura Noda [33]
61Osamu Ogasawara [26] [34]
62Makoto Ogawa [28]
63Hajime Ohyanagi [29]
64Toshitsugu Okayama [10] [11] [15] [18]
65Kousaku Okubo [26] [27] [30] [34]
66Motonori Ota [20]
67Satoshi Ota [33]
68Guy Perrière [4] [7] [12]
69Fengrong Ren [3] [10] [11] [18]
70Naomi Saichi [33]
71Naruya Saitou [2] [23] [27] [33]
72Hiroaki Sakai [29]
73Shigetaka Sakamoto [36]
74Ryuichi Sakate [33]
75Ryoko Sanbonmatsu [33] [35]
76Takuji Sasaki [29]
77Yoshiharu Sato [33]
78Yasumasa Shigemoto [29]
79Makoto K. Shimada [35]
80Tadasu Shin-I [2]
81Sandro José de Souza [26]
82Yukio Sudo [26]
83Sumio Sugano [32]
84Hideaki Sugawara [14] [15] [17] [20] [23] [24] [25] [27] [30] [31] [34] [36] [37]
85Mami Suzuki [33]
86Yoshiyuki Suzuki [22] [33]
87Yutaka Suzuki [32]
88Jun-ichi Takeda [32] [33]
89Takuro Tamura [15] [26]
90Hiroshi Tanaka [3] [10] [11] [18]
91Masayuki Tanaka [33]
92Tsuyoshi Tanaka [29]
93Motohiko Tanino [26] [28]
94Yoshio Tateno [1] [2] [6] [9] [14] [15] [17] [20] [23] [24] [25] [27] [30] [31] [34] [36] [37]
95Fusano Todokoro [28] [33]
96Yoshihiro Ugawa [2]
97Gabriel Valiente [38]
98Ken-nosuke Wada [5]
99Yoshiko Wada [5]
100Shinya Watanabe [26]
101Kaori Yamaguchi [29] [33]
102Yumi Yamaguchi-Kabata [35]
103Chisato Yamasaki [28] [33] [35]

Colors in the list of coauthors

Copyright © Tue Nov 3 08:52:44 2009 by Michael Ley (ley@uni-trier.de)