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David Gilbert Vis

David R. Gilbert

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*2009
67EESung-Hee Park, José A. Reyes, David R. Gilbert, Ji Woong Kim, Sangsoo Kim: Prediction of protein-protein interaction types using association rule based classification. BMC Bioinformatics 10: (2009)
66EEMonika Heiner, Sebastian Lehrack, David Gilbert, Wolfgang Marwan: Extended Stochastic Petri Nets for Model-Based Design of Wetlab Experiments. T. Comp. Sys. Biology 11: 138-163 (2009)
2008
65EERobin Donaldson, David Gilbert: A Model Checking Approach to the Parameter Estimation of Biochemical Pathways. CMSB 2008: 269-287
64EEJosé A. Reyes, David Gilbert: Combining One-Class Classification Models Based on Diverse Biological Data for Prediction of Protein-Protein Interactions. DILS 2008: 177-191
63EEMonika Heiner, David Gilbert, Robin Donaldson: Petri Nets for Systems and Synthetic Biology. SFM 2008: 215-264
62EEDavid Gilbert, Rainer Breitling, Monika Heiner, Robin Donaldson: An Introduction to BioModel Engineering, Illustrated for Signal Transduction Pathways. Workshop on Membrane Computing 2008: 13-28
61EEFabien Jourdan, Rainer Breitling, Michael P. Barrett, David Gilbert: MetaNetter: inference and visualization of high-resolution metabolomic networks. Bioinformatics 24(1): 143-145 (2008)
60EEMallika Veeramalai, David Gilbert: A novel method for comparing topological models of protein structures enhanced with ligand information. Bioinformatics 24(23): 2698-2705 (2008)
59EERainer Breitling, David Gilbert, Monika Heiner, Richard J. Orton: A structured approach for the engineering of biochemical network models, illustrated for signalling pathways. Briefings in Bioinformatics 9(5): 404-421 (2008)
58EESebastian Oehm, David Gilbert, Andreas Tauch, Jens Stoye, Alexander Goesmann: Comparative Pathway Analyzer - a web server for comparative analysis, clustering and visualization of metabolic networks in multiple organisms. Nucleic Acids Research 36(Web-Server-Issue): 433-437 (2008)
2007
57EESung-Hee Park, David Gilbert, Keun Ho Ryu: Fast Structural Similarity Search Based on Topology String Matching. APBC 2007: 341-351
56EEDavid Gilbert, Monika Heiner, Sebastian Lehrack: A Unifying Framework for Modelling and Analysing Biochemical Pathways Using Petri Nets. CMSB 2007: 200-216
55EEAli Al-Shahib, David Gilbert, Rainer Breitling: Discriminating Microbial Species Using Protein Sequence Properties and Machine Learning. IDEAL 2007: 890-897
54EEJean-Christophe Nebel, Pawel Herzyk, David R. Gilbert: Automatic generation of 3D motifs for classification of protein binding sites. BMC Bioinformatics 8: (2007)
53EEJuris Viksna, David Gilbert: Assessment of the probabilities for evolutionary structural changes in protein folds. Bioinformatics 23(7): 832-841 (2007)
52EEJosé A. Reyes, David Gilbert: Prediction of protein-protein interactions using one-class classification methods and integrating diverse biological data. J. Integrative Bioinformatics 4(3): (2007)
2006
51EEDavid Gilbert, Monika Heiner: From Petri Nets to Differential Equations - An Integrative Approach for Biochemical Network Analysis. ICATPN 2006: 181-200
50EEJulie L. Morrison, Rainer Breitling, Desmond J. Higham, David R. Gilbert: A lock-and-key model for protein-protein interactions. Bioinformatics 22(16): 2012-2019 (2006)
49EEDavid R. Gilbert, Hendrik Fuß, Xu Gu, Richard J. Orton, Steve Robinson, Vladislav Vyshemirsky, Mary Jo Kurth, C. Stephen Downes, Werner Dubitzky: Computational methodologies for modelling, analysis and simulation of signalling networks. Briefings in Bioinformatics 7(4): 339-353 (2006)
48EEMuffy Calder, Vladislav Vyshemirsky, David Gilbert, Richard J. Orton: Analysis of Signalling Pathways Using Continuous Time Markov Chains. T. Comp. Sys. Biology: 44-67 (2006)
2005
47EEJulie L. Morrison, Rainer Breitling, Desmond J. Higham, David R. Gilbert: GeneRank: Using search engine technology for the analysis of microarray experiments. BMC Bioinformatics 6: 233 (2005)
46EEGilleain M. Torrance, David R. Gilbert, Ioannis Michalopoulos, David R. Westhead: Protein structure topological comparison, discovery and matching service. Bioinformatics 21(10): 2537-2538 (2005)
45EEAli Al-Shahib, Rainer Breitling, David Gilbert: Franksum: new feature selection method for protein function prediction. Int. J. Neural Syst. 15(4): 259-275 (2005)
44EESung-Hee Park, Keun Ho Ryu, David Gilbert: Fast similarity search for protein 3d structures using topological pattern matching based on spatial relations. Int. J. Neural Syst. 15(4): 287-296 (2005)
43EEDominique Turnbow, Kris Kasianovitz, Lise Snyder, David Gilbert, David Yamamoto: Usability testing for web redesign: a UCLA case study. OCLC Systems & Services 21(3): 226-234 (2005)
2004
42EEAli Al-Shahib, Chao He, Aik Choon Tan, Mark Girolami, David Gilbert: An Assessment of Feature Relevance in Predicting Protein Function from Sequence. IDEAL 2004: 52-57
41EEJanet M. Thornton, David Gilbert, Catherine Brooksbank: ISMB/ECCB 2004. ISMB/ECCB (Supplement of Bioinformatics) 2004: 1-2
40EEJanet M. Thornton, David Gilbert, Catherine Brooksbank: ISMB/ECCB 2004 Organization. ISMB/ECCB (Supplement of Bioinformatics) 2004: 3-5
39 Ioannis Michalopoulos, Gilleain M. Torrance, David R. Gilbert, David R. Westhead: TOPS: an enhanced database of protein structural topology. Nucleic Acids Research 32(Database-Issue): 251-254 (2004)
2003
38EEAik Choon Tan, David Gilbert: An Empirical Comparison of Supervised Machine Learning Techniques in Bioinformatics. APBC 2003: 219-222
37EEYves Deville, David Gilbert, Jacques van Helden, Shoshana J. Wodak: An Overview of Data Models for the Analysis of Biochemical Pathways. CMSB 2003: 174
36 Aik Choon Tan, David Gilbert, Yves Deville: Integrative machine learning approach for multi-class SCOP protein fold classification. German Conference on Bioinformatics 2003: 153-159
35 Juris Viksna, David Gilbert, Gilleain M. Torrance: Protein structure comparison based o n profiles of topological motifs: a feasible way to deal with information from negative examples. German Conference on Bioinformatics 2003: 159-165
34 Yves Deville, David Gilbert, Jacques van Helden, Shoshana J. Wodak: An overview of data models for the analysis of biochemical pathways. Briefings in Bioinformatics 4(3): 246-259 (2003)
33EEJean-Marie Jacquet, Lubos Brim, David Gilbert, Mojmír Kretínský: Coordination by Means of Synchronous and Asynchronous Communication in Concurrent Constraint Programming. Electr. Notes Theor. Comput. Sci. 68(3): (2003)
2002
32EEDavid Gilbert, David R. Westhead, Juris Viksna, Janet M. Thornton: A Computer System to Perform Structure Comparison using Representations of Protein Structure. Computers & Chemistry 26(1): 23-30 (2002)
31 Lubos Brim, Mojmír Kretínský, Jean-Marie Jacquet, David Gilbert: Modelling Multi-Agent Systems as Synchronous Concurrent Constraint Processes. Computers and Artificial Intelligence 21(6): (2002)
2001
30EELubos Brim, David Gilbert, Jean-Marie Jacquet, Mojmír Kretínský: Multi-agent Systems as Concurrent Constraint Processes. SOFSEM 2001: 201-210
29EEJuris Viksna, David Gilbert: Pattern Matching and Pattern Discovery Algorithms for Protein Topologies. WABI 2001: 98-111
28 David Gilbert, Rolf Backofen, Roland H. C. Yap: Introduction to the Special Issue on Bioinformatics. Constraints 6(2/3): 139 (2001)
27 Rolf Backofen, David Gilbert: Bioinformatics and Constraints. Constraints 6(2/3): 141-156 (2001)
26 Ingvar Eidhammer, Inge Jonassen, Svenn Helge Grindhaug, David Gilbert, Madu Ratnayake: A Constraint Based Structure Description Language for Biosequences. Constraints 6(2/3): 173-200 (2001)
25 Michael Schroeder, David Gilbert, Jacques van Helden, Penny Noy: Approaches to visualisation in bioinformatics: from dendrograms to Space Explorer. Inf. Sci. 139(1-2): 19-57 (2001)
2000
24 David Gilbert, Michael Schroeder: FURY: Fuzzy Unification and Resolution Based on Edit Distance. BIBE 2000: 330-336
23EEDavid Gilbert, Catuscia Palamidessi: Concurrent Constraint Programming with Process Mobility. Computational Logic 2000: 463-477
22 David Gilbert: Tutoriel I: Bioinformatique et contraintes. JFPLC 2000: 13-
21 David Gilbert, David R. Westhead, Janet M. Thornton, Karine Yvon: Une technique déclarative pour filtrer des motifs topologiques de protéines. JFPLC 2000: 165-
20EEJacques van Helden, David Gilbert, Lorenz Wernisch, Michael Schroeder, Shoshana J. Wodak: Application of Regulatory Sequence Analysis and Metabolic Network Analysis to the Interpretation of Gene Expression Data. JOBIM 2000: 147-164
1999
19 David Gilbert, Juris Viksna: Pattern discovery methods for protein topology diagrams. German Conference on Bioinformatics 1999: 194-196
18 Jacques van Helden, David Gilbert, Lorenz Wernisch, Renato Mancuso, Matthew Eldridge, Kirill Degtyarenko, Shoshana J. Wodak: Logical Tools for Quering and Assisting Annotation of a Biochemical Pathway Database. German Conference on Bioinformatics 1999: 227-229
17 Alexander A. Letichevsky, David Gilbert: A Model for Interaction of Agents and Environments. WADT 1999: 311-328
16 David Gilbert, David R. Westhead, N. Nagano, Janet M. Thornton: Motif-based searching in TOPS protein topology databases. Bioinformatics 15(4): 317-326 (1999)
15EEAlexander A. Letichevsky, Julia V. Kapitonova, Vladislav A. Volkov, A. Chugayenko, Victor Khomenko, David R. Gilbert: The development of interactive algorithms for the Mathematical Environment. Electr. Notes Theor. Comput. Sci. 23(3): (1999)
1998
14 Alvis Brazma, Inge Jonassen, Ingvar Eidhammer, David Gilbert: Approaches to the Automatic Discovery of Patterns in Biosequences. Journal of Computational Biology 5(2): 277-304 (1998)
1997
13 William M. Gelbart, Madeline A. Crosby, B. Matthews, W. P. Rindone, J. Chillemi, S. Russo Twombly, David Emmert, Michael Ashburner, Rachel A. Drysdale, E. Whitfield, Gillian H. Millburn, A. de Grey, T. Kaufman, K. Matthews, David Gilbert, Victor B. Strelets, C. Tolstoshev: FlyBase: a Drosophila database. The FlyBase consortium. Nucleic Acids Research 25(1): 63-66 (1997)
1996
12EELubos Brim, Jean-Marie Jacquet, David Gilbert, Mojmír Kretínský: A Process Algebra for Synchronous Concurrent Constraint Programming. ALP 1996: 165-178
11 Michael Jampel, Jean-Marie Jacquet, David Gilbert, Sebastian Hunt: Transformations Between HCLP and PCSP. CP 1996: 252-266
10 Michael Jampel, Jean-Marie Jacquet, David Gilbert: A General Framework for Integrating HCLP and PCSP (Poster Abstract). JICSLP 1996: 543
9 David Gilbert: Can Computational Logic Provide a Paradigm for Both the Specification and Implementation of Concurrent Systems? ACM Comput. Surv. 28(2): 303-305 (1996)
1995
8 Lubos Brim, David Gilbert, Jean-Marie Jacquet, Mojmír Kretínský: Synchronisation in Scc. ILPS 1995: 641
1994
7 David Gilbert, Christopher J. Hogger, Jirí Zlatuska: Transforming Specifications of Observable Behaviour into Programs. LOPSTR 1994: 88-103
1992
6 David Gilbert, Christopher J. Hogger: Logic for Representing and Implementing Knwoledge about System Behaviour. Advanced Topics in Artificial Intelligence 1992: 42-49
1991
5 David Gilbert, Christopher J. Hogger: Deriving Logic Programs from Observations. ICLP Workshop on Construction of Logic Programs 1991: 113-126
1989
4 David Gilbert: Specifying Concurrent Systems Using Logic. FORTE 1989: 245-260
1988
3 David Gilbert: A LOTOS to PARLOG Translator. FORTE 1988: 31-44
2 David Gilbert: Specification and Implementation of Concurrent Systems using PARLOG. Specification and Verification of Concurrent Systems 1988: 455-473
1987
1 David Gilbert: Executable LOTOS: Using PARLOG to Implement an FDT. PSTV 1987: 281-294

Coauthor Index

1Ali Al-Shahib [42] [45] [55]
2Michael Ashburner [13]
3Rolf Backofen [27] [28]
4Michael P. Barrett [61]
5Alvis Brazma [14]
6Rainer Breitling [45] [47] [50] [55] [59] [61] [62]
7Lubos Brim [8] [12] [30] [31] [33]
8Catherine Brooksbank [40] [41]
9Muffy Calder (Muffy Thomas) [48]
10J. Chillemi [13]
11A. Chugayenko [15]
12Madeline A. Crosby [13]
13Kirill Degtyarenko [18]
14Yves Deville [34] [36] [37]
15Robin Donaldson [62] [63] [65]
16C. Stephen Downes [49]
17Rachel A. Drysdale [13]
18Werner Dubitzky [49]
19Ingvar Eidhammer [14] [26]
20Matthew Eldridge [18]
21David Emmert [13]
22Hendrik Fuß [49]
23William M. Gelbart [13]
24Mark A. Girolami (Mark Girolami) [42]
25Alexander Goesmann [58]
26A. de Grey [13]
27Svenn Helge Grindhaug [26]
28Xu Gu [49]
29Chao He [42]
30Monika Heiner [51] [56] [59] [62] [63] [66]
31Jacques van Helden [18] [20] [25] [34] [37]
32Pawel Herzyk [54]
33Desmond J. Higham [47] [50]
34Christopher J. Hogger [5] [6] [7]
35Sebastian Hunt [11]
36Jean-Marie Jacquet [8] [10] [11] [12] [30] [31] [33]
37Michael Jampel [10] [11]
38Inge Jonassen [14] [26]
39Fabien Jourdan [61]
40Julia V. Kapitonova [15]
41Kris Kasianovitz [43]
42T. Kaufman [13]
43Victor Khomenko [15]
44Ji Woong Kim [67]
45Sangsoo Kim [67]
46Mojmír Kretínský [8] [12] [30] [31] [33]
47Mary Jo Kurth [49]
48Sebastian Lehrack [56] [66]
49Alexander A. Letichevsky [15] [17]
50Renato Mancuso [18]
51Wolfgang Marwan [66]
52B. Matthews [13]
53K. Matthews [13]
54Ioannis Michalopoulos [39] [46]
55Gillian H. Millburn [13]
56Julie L. Morrison [47] [50]
57N. Nagano [16]
58Jean-Christophe Nebel [54]
59Penny Noy [25]
60Sebastian Oehm [58]
61Richard J. Orton [48] [49] [59]
62Catuscia Palamidessi [23]
63Sung-Hee Park [44] [57] [67]
64Madu Ratnayake [26]
65José A. Reyes [52] [64] [67]
66W. P. Rindone [13]
67Steve Robinson [49]
68Keun Ho Ryu [44] [57]
69Michael Schroeder [20] [24] [25]
70Lise Snyder [43]
71Jens Stoye [58]
72Victor B. Strelets [13]
73Aik Choon Tan [36] [38] [42]
74Andreas Tauch [58]
75Janet M. Thornton [16] [21] [32] [40] [41]
76C. Tolstoshev [13]
77Gilleain M. Torrance [35] [39] [46]
78Dominique Turnbow [43]
79S. Russo Twombly [13]
80Mallika Veeramalai [60]
81Juris Viksna [19] [29] [32] [35] [53]
82Vladislav A. Volkov [15]
83Vladislav Vyshemirsky [48] [49]
84Lorenz Wernisch [18] [20]
85David R. Westhead [16] [21] [32] [39] [46]
86E. Whitfield [13]
87Shoshana J. Wodak [18] [20] [34] [37]
88David Yamamoto [43]
89Roland H. C. Yap [28]
90Karine Yvon [21]
91Jirí Zlatuska [7]

Colors in the list of coauthors

Copyright © Tue Nov 3 08:52:44 2009 by Michael Ley (ley@uni-trier.de)