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Piero Fariselli Vis

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*2009
45EELisa Bartoli, Pier Luigi Martelli, Ivan Rossi, Piero Fariselli, Rita Casadio: Prediction of Protein-Protein Interacting Sites: How to Bridge Molecular Events to Large Scale Protein Interaction Networks. CMSB 2009: 1-17
44EEPietro di Lena, Piero Fariselli, Luciano Margara, Marco Vassura, Rita Casadio: On the Upper Bound of the Prediction Accuracy of Residue Contacts in Proteins with Correlated Mutations: The Case Study of the Similarity Matrices. WABI 2009: 62-72
43EEMarco Vassura, Luciano Margara, Piero Fariselli, Rita Casadio: A graph theoretic approach to protein structure selection. Artificial Intelligence in Medicine 45(2-3): 229-237 (2009)
42EEIakes Ezkurdia, Lisa Bartoli, Piero Fariselli, Rita Casadio, Alfonso Valencia, Michael L. Tress: Progress and challenges in predicting protein-protein interaction sites. Briefings in Bioinformatics 10(3): 233-246 (2009)
2008
41EEPietro di Lena, Luciano Margara, Marco Vassura, Piero Fariselli, Rita Casadio: A New Protein Representation Based on Fragment Contacts: Towards an Improvement of Contact Maps Predictions. CIBB 2008: 210-221
40EELudovica Montanucci, Piero Fariselli, Pier Luigi Martelli, Rita Casadio: Predicting protein thermostability changes from sequence upon multiple mutations. ISMB 2008: 190-195
39EEEmidio Capriotti, Piero Fariselli, Ivan Rossi, Rita Casadio: A three-state prediction of single point mutations on protein stability changes. BMC Bioinformatics 9(S-2): (2008)
38EEMarco Vassura, Luciano Margara, Pietro di Lena, Filippo Medri, Piero Fariselli, Rita Casadio: FT-COMAR: fault tolerant three-dimensional structure reconstruction from protein contact maps. Bioinformatics 24(10): 1313-1315 (2008)
37EEMarco Vassura, Luciano Margara, Pietro di Lena, Filippo Medri, Piero Fariselli, Rita Casadio: Reconstruction of 3D Structures From Protein Contact Maps. IEEE/ACM Trans. Comput. Biology Bioinform. 5(3): 357-367 (2008)
2007
36EEPiero Fariselli, Daniele Molinini, Rita Casadio, Anders Krogh: Prediction of Structurally-Determined Coiled-Coil Domains with Hidden Markov Models. BIRD 2007: 292-302
35EEMarco Vassura, Luciano Margara, Filippo Medri, Pietro di Lena, Piero Fariselli, Rita Casadio: Reconstruction of 3D Structures from Protein Contact Maps. ISBRA 2007: 578-589
34EEMaria Mirto, Ivan Rossi, Italo Epicoco, Sandro Fiore, Piero Fariselli, Rita Casadio, Giovanni Aloisio: High Throughput Protein Similarity Searches in the LIBI Grid Problem Solving Environment. ISPA Workshops 2007: 414-423
33EELuciana Carota, Lisa Bartoli, Piero Fariselli, Pier Luigi Martelli, Ludovica Montanucci, Giorgio Maggi, Rita Casadio: High Throughput Comparison of Prokaryotic Genomes. PPAM 2007: 1200-1209
32EEMarco Vassura, Luciano Margara, Pietro di Lena, Filippo Medri, Piero Fariselli, Rita Casadio: Fault Tolerance for Large Scale Protein 3D Reconstruction from Contact Maps. WABI 2007: 25-37
31EEMarco Vassura, Luciano Margara, Piero Fariselli, Rita Casadio: A Graph Theoretic Approach to Protein Structure Selection. WILF 2007: 497-504
30EELisa Bartoli, Remo Calabrese, Piero Fariselli, Damiano G. Mita, Rita Casadio: A computational approach for detecting peptidases and their specific inhibitors at the genome level. BMC Bioinformatics 8(S-1): (2007)
29EEPiero Fariselli, Ivan Rossi, Emidio Capriotti, Rita Casadio: The WWWH of remote homolog detection: The state of the art. Briefings in Bioinformatics 8(2): 78-87 (2007)
28EEAndrea Pierleoni, Pier Luigi Martelli, Piero Fariselli, Rita Casadio: eSLDB: eukaryotic subcellular localization database. Nucleic Acids Research 35(Database-Issue): 208-212 (2007)
2006
27EEAndrea Pierleoni, Pier Luigi Martelli, Piero Fariselli, Rita Casadio: BaCelLo: a balanced subcellular localization predictor. ISMB (Supplement of Bioinformatics) 2006: 415-416
26EEMauro Amico, Michele Finelli, Ivan Rossi, Andrea Zauli, Arne Elofsson, Håkan Viklund, Gunnar von Heijne, David Jones, Anders Krogh, Piero Fariselli, Pier Luigi Martelli, Rita Casadio: PONGO: a web server for multiple predictions of all-alpha transmembrane proteins. Nucleic Acids Research 34(Web-Server-Issue): 169-172 (2006)
2005
25EEEmidio Capriotti, Piero Fariselli, Remo Calabrese, Rita Casadio: Predicting protein stability changes from sequences using support vector machines. ECCB/JBI 2005: 58
24EEPiero Fariselli, Pier Luigi Martelli, Rita Casadio: A new decoding algorithm for hidden Markov models improves the prediction of the topology of all-beta membrane proteins. BMC Bioinformatics 6(S-4): (2005)
23EEPiero Fariselli, Michele Finelli, Ivan Rossi, Mauro Amico, Andrea Zauli, Pier Luigi Martelli, Rita Casadio: TRAMPLE: the transmembrane protein labelling environment. Nucleic Acids Research 33(Web-Server-Issue): 198-201 (2005)
22EEEmidio Capriotti, Piero Fariselli, Rita Casadio: I-Mutant2.0: predicting stability changes upon mutation from the protein sequence or structure. Nucleic Acids Research 33(Web-Server-Issue): 306-310 (2005)
2004
21EEEmidio Capriotti, Piero Fariselli, Rita Casadio: A neural-network-based method for predicting protein stability changes upon single point mutations. ISMB/ECCB (Supplement of Bioinformatics) 2004: 63-68
20EECarine Berezin, Fabian Glaser, Josef Rosenberg, Inbal Paz, Tal Pupko, Piero Fariselli, Rita Casadio, Nir Ben-Tal: ConSeq: the identification of functionally and structurally important residues in protein sequences. Bioinformatics 20(8): 1322-1324 (2004)
2003
19EEPier Luigi Martelli, Piero Fariselli, Rita Casadio: An ENSEMBLE machine learning approach for the prediction of all-alpha membrane proteins. ISMB (Supplement of Bioinformatics) 2003: 205-211
18EEPiero Fariselli, Giacomo Finocchiaro, Rita Casadio: Prediction of Signal Peptide in Proteins with Neural Networks. WIRN 2003: 237-244
17 Piero Fariselli, Giacomo Finocchiaro, Rita Casadio: SPEPlip: the detection of signal peptide and lipoprotein cleavage sites. Bioinformatics 19(18): 2498-2499 (2003)
16 Piero Fariselli, Michele Finelli, Davide Marchignoli, Pier Luigi Martelli, Ivan Rossi, Rita Casadio: MaxSubSeq: an algorithm for segment-length optimization. The case study of the transmembrane spanning segments. Bioinformatics 19(4): 500-505 (2003)
15 Rita Casadio, Piero Fariselli, Pier Luigi Martelli: In silico prediction of the structure of membrane proteins: Is it feasible? Briefings in Bioinformatics 4(4): 341-348 (2003)
2002
14 Pier Luigi Martelli, Piero Fariselli, Anders Krogh, Rita Casadio: A sequence-profile-based HMM for predicting and discriminating beta barrel membrane proteins. ISMB 2002: 46-53
2001
13 Gianluca Pollastri, Pierre Baldi, Piero Fariselli, Rita Casadio: Improved prediction of the number of residue contacts in proteins by recurrent neural networks. ISMB (Supplement of Bioinformatics) 2001: 234-242
12 Piero Fariselli, Rita Casadio: RCNPRED: prediction of the residue co-ordination numbers in proteins. Bioinformatics 17(1): 202-204 (2001)
11 Piero Fariselli, Rita Casadio: Prediction of disulfide connectivity in proteins. Bioinformatics 17(10): 957-964 (2001)
2000
10 Piero Fariselli, Rita Casadio: Prediction of the Number of Residue Contacts in Proteins. ISMB 2000: 146-151
1999
9 Rita Casadio, Mario Compiani, Piero Fariselli, Pier Luigi Martelli: A Data Base of Minimally Frustrated Alpha-Helical Segments Extracted from Proteins According to an Entropy Criterion. ISMB 1999: 68-76
1997
8 Piero Fariselli, Rita Casadio: Pseudodihedral Potential of Protein Residues and the Prediction of Folding. BCEC 1997: 112-121
7 P. Arrigo, Piero Fariselli, Rita Casadio: Self-Organizing Neural Maps of the Coding Sequences of G-protein-coupled Receptors Reveal Local Domains Associated with Potentially Functional Determinants in the Proteins. ISMB 1997: 44-47
6 Francesco Vivarelli, Piero Fariselli, Rita Casadio: The Prediction of Protein Secondary Structure with a Cascade Correlation Learning Architecture of Neural Networks. Neural Computing and Applications 6(1): 57-62 (1997)
1996
5 P. Arrigo, Piero Fariselli, Rita Casadio: The Identification of Locally Ordered Features an Completely unaligned Genomic Sequences by using an Unsupervised Neural Classifier. German Conference on Bioinformatics 1996: 156-158
4 Burkhard Rost, Rita Casadio, Piero Fariselli: Refining Neural Network Predictions for Helical Transmembrane Proteins by Dynamic Programming. ISMB 1996: 192-200
3 Piero Fariselli, Rita Casadio: HTP: a neural network-based method for predicting the topology of helical transmembrane domains in proteins. Computer Applications in the Biosciences 12(1): 41-48 (1996)
1995
2 Rita Casadio, Mario Compiani, Piero Fariselli, Francesco Vivarelli: Predicting Free Energy Contribution to the Conformational Stability of Folded Proteins From the Residue Sequence with Radial Basis Function Networks. ISMB 1995: 81-88
1 Francesco Vivarelli, G. Giusti, M. Villani, Renato Campanini, Piero Fariselli, Mario Compiani, Rita Casadio: LGANN: a parallel system combining a local genetic algorithm and neural networks for the prediction of secondary structure of proteins. Computer Applications in the Biosciences 11(3): 253-260 (1995)

Coauthor Index

1Giovanni Aloisio [34]
2Mauro Amico [23] [26]
3P. Arrigo [5] [7]
4Pierre Baldi [13]
5Lisa Bartoli [30] [33] [42] [45]
6Nir Ben-Tal [20]
7Carine Berezin [20]
8Remo Calabrese [25] [30]
9Renato Campanini [1]
10Emidio Capriotti [21] [22] [25] [29] [39]
11Luciana Carota [33]
12Rita Casadio [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] [24] [25] [26] [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45]
13Mario Compiani [1] [2] [9]
14Arne Elofsson [26]
15Italo Epicoco [34]
16Iakes Ezkurdia [42]
17Michele Finelli [16] [23] [26]
18Giacomo Finocchiaro [17] [18]
19Sandro Fiore [34]
20G. Giusti [1]
21Fabian Glaser [20]
22Gunnar von Heijne [26]
23David Jones [26]
24Anders Krogh [14] [26] [36]
25Pietro di Lena [32] [35] [37] [38] [41] [44]
26Giorgio Maggi [33]
27Davide Marchignoli [16]
28Luciano Margara [31] [32] [35] [37] [38] [41] [43] [44]
29Pier Luigi Martelli [9] [14] [15] [16] [19] [23] [24] [26] [27] [28] [33] [40] [45]
30Filippo Medri [32] [35] [37] [38]
31Maria Mirto [34]
32Damiano G. Mita [30]
33Daniele Molinini [36]
34Ludovica Montanucci [33] [40]
35Inbal Paz [20]
36Andrea Pierleoni [27] [28]
37Gianluca Pollastri [13]
38Tal Pupko [20]
39Josef Rosenberg [20]
40Ivan Rossi [16] [23] [26] [29] [34] [39] [45]
41Burkhard Rost [4]
42Michael L. Tress [42]
43Alfonso Valencia [42]
44Marco Vassura [31] [32] [35] [37] [38] [41] [43] [44]
45Håkan Viklund [26]
46M. Villani [1]
47Francesco Vivarelli [1] [2] [6]
48Andrea Zauli [23] [26]

Copyright © Tue Nov 3 08:52:44 2009 by Michael Ley (ley@uni-trier.de)