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Bruce Randall Donald Vis

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*2008
71EEIvelin Georgiev, Daniel Keedy, Jane S. Richardson, David C. Richardson, Bruce Randall Donald: Algorithm for backrub motions in protein design. ISMB 2008: 196-204
70EEIvelin Georgiev, Ryan H. Lilien, Bruce Randall Donald: The minimized dead-end elimination criterion and its application to protein redesign in a hybrid scoring and search algorithm for computing partition functions over molecular ensembles. Journal of Computational Chemistry 29(10): 1527-1542 (2008)
2007
69EEIvelin Georgiev, Bruce Randall Donald: Dead-End Elimination with Backbone Flexibility. ISMB/ECCB (Supplement of Bioinformatics) 2007: 185-194
2006
68EEIvelin Georgiev, Ryan H. Lilien, Bruce Randall Donald: Improved Pruning algorithms and Divide-and-Conquer strategies for Dead-End Elimination, with application to protein design. ISMB (Supplement of Bioinformatics) 2006: 174-183
67EEIvelin Georgiev, Ryan H. Lilien, Bruce Randall Donald: A Novel Minimized Dead-End Elimination Criterion and Its Application to Protein Redesign in a Hybrid Scoring and Search Algorithm for Computing Partition Functions over Molecular Ensembles. RECOMB 2006: 530-545
66EEShobha Potluri, Anthony K. Yan, James J. Chou, Bruce Randall Donald, Chris Bailey-Kellogg: Extended Abstract: Structure Determination of Symmetric Protein Complexes by a Complete Search of Symmetry Configuration Space Using NMR Distance Restraints. WAFR 2006: 335-340
65EELincong Wang, Ramgopal R. Mettu, Bruce Randall Donald: A Polynomial-Time Algorithm for De Novo Protein Backbone Structure Determination from Nuclear Magnetic Resonance Data. Journal of Computational Biology 13(7): 1267-1288 (2006)
2005
64EELincong Wang, Bruce Randall Donald: An Efficient and Accurate Algorithm for Assigning Nuclear Overhauser Effect Restraints Using a Rotamer Library Ensemble and Residual Dipolar Couplings. CSB 2005: 189-202
63EELincong Wang, Ramgopal R. Mettu, Bruce Randall Donald: An Algebraic Geometry Approach to Protein Structure Determination from NMR Data. CSB 2005: 235-246
62EERamgopal R. Mettu, Ryan H. Lilien, Bruce Randall Donald: High-throughput inference of protein-protein interfaces from unassigned NMR data. ISMB (Supplement of Bioinformatics) 2005: 292-301
61EEBruce Randall Donald, Christopher G. Levey, Craig D. McGray, Igor Paprotny, Daniela Rus: A Steerable, Untethered, 250 × 60µm MEMS Mobile Micro-Robot. ISRR 2005: 337-356
60EEBruce Randall Donald: Computational and physical modeling challenges in structural molecular biology and proteomics. Symposium on Solid and Physical Modeling 2005: 7
59EEAnthony K. Yan, Christopher James Langmead, Bruce Randall Donald: A Probability-Based Similarity Measure for Saupe Alignment Tensors with Applications to Residual Dipolar Couplings in NMR Structural Biology. I. J. Robotic Res. 24(2-3): 165-182 (2005)
58EERyan H. Lilien, Brian W. Stevens, Amy C. Anderson, Bruce Randall Donald: A Novel Ensemble-Based Scoring and Search Algorithm for Protein Redesign and Its Application to Modify the Substrate Specificity of the Gramicidin Synthetase A Phenylalanine Adenylation Enzyme. Journal of Computational Biology 12(6): 740-761 (2005)
2004
57EEChristopher James Langmead, Bruce Randall Donald: High-Throughput 3D Structural Homology Detection via NMR Resonance Assignment. CSB 2004: 278-289
56EELincong Wang, Bruce Randall Donald: Analysis of a Systematic Search-Based Algorithm for Determining Protein Backbone Structure from a Minimum Number of Residual Dipolar Couplings. CSB 2004: 319-330
55EERyan H. Lilien, Brian W. Stevens, Amy C. Anderson, Bruce Randall Donald: A novel ensemble-based scoring and search algorithm for protein redesign, and its application to modify the substrate specificity of the gramicidin synthetase a phenylalanine adenylation enzyme. RECOMB 2004: 46-57
54EEChristopher James Langmead, Anthony K. Yan, Ryan H. Lilien, Lincong Wang, Bruce Randall Donald: A Polynomial-Time Nuclear Vector Replacement Algorithm for Automated NMR Resonance Assignments. Journal of Computational Biology 11(2/3): 277-298 (2004)
2003
53EEChristopher James Langmead, Bruce Randall Donald: 3D Structural Homology Detection via Unassigned Residual Dipolar Couplings. CSB 2003: 209-219
52EELincong Wang, Ramgopal R. Mettu, Ryan H. Lilien, Bruce Randall Donald: An Exact Algorithm For Determining Protein Backbone Structure From NH Residual Dipolar Couplings. CSB 2003: 611-612
51EEBruce Randall Donald, Christopher G. Levey, Craig D. McGray, Daniela Rus, Mike Sinclair: UntetheredMicro-Actuators for Autonomous Micro-robot Locomotion: Design, Fabrication, Control, and Performance. ISRR 2003: 502-516
50EEChristopher James Langmead, Anthony K. Yan, Ryan H. Lilien, Lincong Wang, Bruce Randall Donald: Large a polynomial-time nuclear vector replacement algorithm for automated NMR resonance assignments. RECOMB 2003: 176-187
49EEChristopher James Langmead, Anthony K. Yan, C. Robertson McClung, Bruce Randall Donald: Phase-Independent Rhythmic Analysis of Genome-Wide Expression Patterns. Journal of Computational Biology 10(3/4): 521-536 (2003)
48EERyan H. Lilien, Hany Farid, Bruce Randall Donald: Probabilistic Disease Classification of Expression-Dependent Proteomic Data from Mass Spectrometry of Human Serum. Journal of Computational Biology 10(6): 925-946 (2003)
2002
47EEChristopher James Langmead, C. Robertson McClung, Bruce Randall Donald: A Maximum Entropy Algorithm for Rhythmic Analysis of Genome-Wide Expression Patterns. CSB 2002: 237-245
46EEChristopher James Langmead, Anthony K. Yan, C. Robertson McClung, Bruce Randall Donald: Phase-independent rhythmic analysis of genome-wide expression patterns. RECOMB 2002: 205-215
45 Bruce Randall Donald, Kevin M. Lynch, Daniela Rus: Guest Editors' Introduction to the Special Issue on Algorithmic Foundations of Robotics. I. J. Robotic Res. 21(3): 177-178 (2002)
2001
44 Bruce Randall Donald, Christopher Bailey-Kellogg, Jack Kelley, Ryan H. Lilien: Physical Geometric Algorithms for Structural Molecular Biology. ICRA 2001: 940-947
43EEChristopher James Langmead, Bruce Randall Donald: Extracting structural information using time-frequency analysis of protein NMR data. RECOMB 2001: 164-175
42 Christopher Bailey-Kellogg, John J. Kelley, Clifford Stein, Bruce Randall Donald: Reducing Mass Degeneracy in SAR by MS by Stable Isotopic Labeling. Journal of Computational Biology 8(1): 19-36 (2001)
2000
41 John W. Suh, R. Bruce Darling, Karl-Friedrich Böhringer, Bruce Randall Donald, Henry Baltes, Gregory T. A. Kovacs: Fully Programmable MEMS Ciliary Actuator Arrays for Micromanipulation Tasks. ICRA 2000: 1101-1108
40 Bruce Randall Donald, Frederick Henle: Using Haptic Vector Fields for Animation Motion Control. ICRA 2000: 3435-3442
39 Jon Howell, Bruce Randall Donald: Practical Mobile Robot Self-Localization. ICRA 2000: 3485-3492
38 Bruce Randall Donald, Larry Gariepy, Daniela Rus: Distributed Manipulation of Multiple Objects using Ropes. ICRA 2000: 450-457
37 Christopher Bailey-Kellogg, John J. Kelley, Clifford Stein, Bruce Randall Donald: Reducing Mass Degeneracy in SAR by MS by Stable Isotopic Labeling. ISMB 2000: 13-24
36EEChristopher Bailey-Kellogg, Alik Widge, John J. Kelley, Marcelo J. Berardi, John H. Bushweller, Bruce Randall Donald: The NOESY jigsaw: automated protein secondary structure and main-chain assignment from sparse, unassigned NMR data. RECOMB 2000: 33-44
35EETom Ngo, Doug Cutrell, Jenny Dana, Bruce Randall Donald, Lorie Loeb, Shunhui Zhu: Accessible animation and customizable graphics via simplicial configuration modeling. SIGGRAPH 2000: 403-410
34EEAmy J. Briggs, Bruce Randall Donald: Visibility-Based Planning of Sensor Control Strategies. Algorithmica 26(3-4): 364-388 (2000)
33EEKarl-Friedrich Böhringer, Vivek Bhatt, Bruce Randall Donald, Kenneth Y. Goldberg: Algorithms for Sensorless Manipulation Using a Vibrating Surface. Algorithmica 26(3-4): 389-429 (2000)
32EER. G. Brown, Bruce Randall Donald: Mobile Robot Self-Localization without Explicit Landmarks. Algorithmica 26(3-4): 515-559 (2000)
1999
31 Bruce Randall Donald, Larry Gariepy, Daniela Rus: Experiments in Constrained Prehensile Manipulation: Distributed Manipulation with Ropes. ISER 1999: 25-36
30EEKarl-Friedrich Böhringer, Bruce Randall Donald, Dan Halperin: On the Area Bisectors of a Polygon. Discrete & Computational Geometry 22(2): 269-285 (1999)
29EEKarl-Friedrich Böhringer, Bruce Randall Donald, Noel C. MacDonald: Programmable Force Fields for Distributed Manipulation, with Applications to MEMS Actuator Arrays and Vibratory Parts Feeders. I. J. Robotic Res. 18(2): 168-200 (1999)
1997
28EEKarl-Friedrich Böhringer, Bruce Randall Donald, Dan Halperin: The Area Bisectors of a Polygon and Force Equilibria in Programmable Vector Fields. Symposium on Computational Geometry 1997: 457-459
27 Bruce Randall Donald, James Jennings, Daniela Rus: Information Invariants for Distributed Manipulation. I. J. Robotic Res. 16(5): 673-702 (1997)
26 Bruce Randall Donald, James Jennings, Daniela Rus: Minimalism Distribution Supermodularity. J. Exp. Theor. Artif. Intell. 9(2-3): 293-321 (1997)
1995
25 Karl-Friedrich Böhringer, Russell Brown, Bruce Randall Donald, James Jennings, Daniela Rus: Distributed Robotic Manipulation: Experiments in Minimalism. ISER 1995: 11-25
24 Bruce Randall Donald, Patrick G. Xavier: Provably Good Approximation Algorithms for Optimal Kinodynamic Planning: Robots with Decoupled Dynamics Bounds. Algorithmica 14(6): 443-479 (1995)
23 Bruce Randall Donald, Patrick G. Xavier: Provably Good Approximation Algorithms for Optimal Kinodynamic Planning for Cartesian Robots and Open-Chain Manipulators. Algorithmica 14(6): 480-530 (1995)
22EEBruce Randall Donald: On Information Invariants in Robotics. Artif. Intell. 72(1-2): 217-304 (1995)
1994
21 Amy J. Briggs, Bruce Randall Donald: Automatic Sensor Configuration for Task-Directed Planning. ICRA 1994: 1345-1350
20 Bruce Randall Donald, James Jennings, Daniela Rus: Analyzing Teams of Cooperating Mobile Robots. ICRA 1994: 1896-1903
19 Karl-Friedrich Böhringer, Bruce Randall Donald, Robert Mihailovich, Noel C. MacDonald: Sensorless Manipulation Using Massively Parallel Microfabricated Actuator Arrays. ICRA 1994: 826-833
1993
18 Bruce Randall Donald: Information Invariants in Robotics: Part I - State, Communication, and Side-Effects. ICRA (3) 1993: 276-283
17 Bruce Randall Donald: Information Invariants in Robotics: Part II - Sensors and Computation. ICRA (3) 1993: 284-290
16 Bruce Randall Donald: Special Issue on Computational Robotics: The Geometric Theory of Manipulation, Planning, and Control. Algorithmica 10(2-4): 91-101 (1993)
15EEBruce Randall Donald, Patrick G. Xavier, John F. Canny, John H. Reif: Kinodynamic Motion Planning. J. ACM 40(5): 1048-1066 (1993)
1992
14EEJohn F. Canny, Bruce Randall Donald, Eugene K. Ressler: A Rational Rotation Method for Robust Geometric Algorithms. Symposium on Computational Geometry 1992: 251-260
13EEBruce Randall Donald, James Jennings, Russell Brown: Constructive recognizability for task-directed robot programming. Robotics and Autonomous Systems 9(1-2): 41-74 (1992)
1991
12 Bruce Randall Donald, Davied Renpan Chang: On the Complexity of Computing the Homology Type of a Triangulation FOCS 1991: 650-661
1990
11EEJed Lengyel, Mark Reichert, Bruce Randall Donald, Donald P. Greenberg: Real-time robot motion planning using rasterizing computer graphics hardware. SIGGRAPH 1990: 327-335
10EEBruce Randall Donald, Patrick G. Xavier: Provably Good Approximation Algorithms for Optimal Kinodynamic Planning for Cartesian Robots and Open Chain Manipulators. Symposium on Computational Geometry 1990: 290-300
9 Bruce Randall Donald: The Complexity of Planar Compliant Motion Planning Under Uncertainty. Algorithmica 5(3): 353-382 (1990)
8 Bruce Randall Donald: Planning Multi-Step Error Detection and Recovery Strategies. I. J. Robotic Res. 9(1): 3-60 (1990)
1989
7 Bruce Randall Donald: Error Detection and Recovery in Robotics Springer 1989
1988
6 John F. Canny, Bruce Randall Donald, John H. Reif, Patrick G. Xavier: On the Complexity of Kinodynamic Planning FOCS 1988: 306-316
5EEBruce Randall Donald: The Complexity of Planar Compliant Motion Planning Under Uncertainty. Symposium on Computational Geometry 1988: 309-318
4 Bruce Randall Donald: A Geometric Approach to Error Detection and Recovery for Robot Motion Planning with Uncertainty. Artif. Intell. 37(1-3): 223-271 (1988)
3 John F. Canny, Bruce Randall Donald: Simplified Voronoi Diagrams. Discrete & Computational Geometry 3: 219-236 (1988)
1987
2EEJohn F. Canny, Bruce Randall Donald: Simplified Voronoi Diagrams. Symposium on Computational Geometry 1987: 153-161
1 Bruce Randall Donald: A Search Algorithm for Motion Planning with Six Degrees of Freedom. Artif. Intell. 31(3): 295-353 (1987)

Coauthor Index

1Amy C. Anderson [55] [58]
2Chris Bailey-Kellogg (Christopher Bailey-Kellogg) [36] [37] [42] [44] [66]
3Henry Baltes [41]
4Marcelo J. Berardi [36]
5Vivek Bhatt [33]
6Karl-Friedrich Böhringer [19] [25] [28] [29] [30] [33] [41]
7Amy J. Briggs [21] [34]
8R. G. Brown [32]
9Russell Brown [13] [25]
10John H. Bushweller [36]
11John F. Canny (John Canny) [2] [3] [6] [14] [15]
12Davied Renpan Chang [12]
13James J. Chou [66]
14Doug Cutrell [35]
15Jenny Dana [35]
16R. Bruce Darling [41]
17Hany Farid [48]
18Larry Gariepy [31] [38]
19Ivelin Georgiev [67] [68] [69] [70] [71]
20Kenneth Y. Goldberg [33]
21Donald P. Greenberg [11]
22Dan Halperin [28] [30]
23Frederick Henle [40]
24Jon Howell [39]
25James Jennings [13] [20] [25] [26] [27]
26Daniel Keedy [71]
27Jack Kelley [44]
28John J. Kelley [36] [37] [42]
29Gregory T. A. Kovacs [41]
30Christopher James Langmead [43] [46] [47] [49] [50] [53] [54] [57] [59]
31Jed Lengyel (Jerome Edward Lengyel) [11]
32Christopher G. Levey [51] [61]
33Ryan H. Lilien [44] [48] [50] [52] [54] [55] [58] [62] [67] [68] [70]
34Lorie Loeb [35]
35Kevin M. Lynch [45]
36Noel C. MacDonald [19] [29]
37C. Robertson McClung [46] [47] [49]
38Craig D. McGray [51] [61]
39Ramgopal R. Mettu [52] [62] [63] [65]
40Robert Mihailovich [19]
41Tom Ngo [35]
42Igor Paprotny [61]
43Shobha Potluri [66]
44Mark Reichert [11]
45John H. Reif [6] [15]
46Eugene K. Ressler [14]
47David C. Richardson [71]
48Jane S. Richardson [71]
49Daniela Rus [20] [25] [26] [27] [31] [38] [45] [51] [61]
50Mike Sinclair [51]
51Clifford Stein [37] [42]
52Brian W. Stevens [55] [58]
53John W. Suh [41]
54Lincong Wang [50] [52] [54] [56] [63] [64] [65]
55Alik Widge [36]
56Patrick G. Xavier [6] [10] [15] [23] [24]
57Anthony K. Yan [46] [49] [50] [54] [59] [66]
58Shunhui Zhu [35]

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Copyright © Tue Nov 3 08:52:44 2009 by Michael Ley (ley@uni-trier.de)