| * | 2009 |
|---|
| 6 | EE | Luiz Carlos Junior Alcantara,
Sharon Cassol,
Pieter Libin,
Koen Deforche,
Oliver G. Pybus,
Marc Van Ranst,
Bernardo Galvão-Castro,
Anne-Mieke Vandamme,
Tulio de Oliveira:
A standardized framework for accurate, high-throughput genotyping of recombinant and non-recombinant viral sequences.
Nucleic Acids Research 37(Web-Server-Issue): 634-642 (2009) |
| 2008 |
|---|
| 5 | EE | Koen Deforche,
Ricardo Camacho,
Kristel Van Laethem,
Philippe Lemey,
Andrew Rambaut,
Yves Moreau,
Anne-Mieke Vandamme:
Estimation of an in vivo fitness landscape experienced by HIV-1 under drug selective pressure useful for prediction of drug resistance evolution during treatment.
Bioinformatics 24(1): 34-41 (2008) |
| 2007 |
|---|
| 4 | EE | Koen Deforche,
Ricardo Camacho,
Kristel Van Laethem,
Beth Shapiro,
Yves Moreau,
Andrew Rambaut,
Anne-Mieke Vandamme,
Philippe Lemey:
Estimating the Relative Contribution of dNTP Pool Imbalance and APOBEC3G/3F Editing to HIV Evolution In Vivo.
Journal of Computational Biology 14(8): 1105-1114 (2007) |
| 2006 |
|---|
| 3 | EE | Koen Deforche,
T. Silander,
Ricardo Camacho,
Z. Grossman,
M. A. Soares,
Kristel Van Laethem,
R. Kantor,
Yves Moreau,
Anne-Mieke Vandamme:
Analysis of HIV-1 pol sequences using Bayesian Networks: implications for drug resistance.
Bioinformatics 22(24): 2975-2979 (2006) |
| 2005 |
|---|
| 2 | EE | Tulio de Oliveira,
Koen Deforche,
Sharon Cassol,
Mika Salminen,
Dimitris Paraskevis,
Chris Seebregts,
Joe Snoeck,
Estrelita J. Janse van Rensburg,
Annemarie M. J. Wensing,
David A. van de Vijver,
Charles A. Boucher,
Ricardo Camacho,
Anne-Mieke Vandamme:
An automated genotyping system for analysis of HIV-1 and other microbial sequences.
Bioinformatics 21(19): 3797-3800 (2005) |
| 1 | EE | Dimitris Paraskevis,
Koen Deforche,
Philippe Lemey,
G. Magiorkinis,
A. Hatzakis,
Anne-Mieke Vandamme:
SlidingBayes: exploring recombination using a sliding window approach based on Bayesian phylogenetic inference.
Bioinformatics 21(7): 1274-1275 (2005) |
