dblp.uni-trier.dewww.uni-trier.de

José María Carazo Vis

List of publications from the DBLP Bibliography Server - FAQ
Coauthor Index - Ask others: ACM DL/Guide - CiteSeerX - CSB - MetaPress - Google - Bing - Yahoo
Home Page

*2009
58EECarlos Oscar Sánchez Sorzano, Cédric Messaoudi, Matthias Eibauer, Jose-Roman Bilbao-Castro, Reiner Hegerl, S. Nickell, Sergio Marco, José María Carazo: Marker-free image registration of electron tomography tilt-series. BMC Bioinformatics 10: (2009)
57EENatalia Jiménez-Lozano, Joan Segura, José Ramón Macías, Juanjo Vega, José María Carazo: aGEM: an integrative system for analyzing spatial-temporal gene-expression information. Bioinformatics 25(19): 2566-2572 (2009)
56EERubén Nogales-Cadenas, Federico Abascal, Javier Díez-Pérez, José María Carazo, Alberto D. Pascual-Montano: CentrosomeDB: a human centrosomal proteins database. Nucleic Acids Research 37(Database-Issue): 175-180 (2009)
55EEMiguel Vazquez, Pedro Carmona-Saez, Rubén Nogales-Cadenas, Monica Chagoyen, Francisco Tirado, José María Carazo, Alberto D. Pascual-Montano: SENT: semantic features in text. Nucleic Acids Research 37(Web-Server-Issue): 153-159 (2009)
54EERubén Nogales-Cadenas, Pedro Carmona-Saez, Miguel Vazquez, Cesar Vicente, Xiaoyuan Yang, Francisco Tirado, José María Carazo, Alberto D. Pascual-Montano: GeneCodis: interpreting gene lists through enrichment analysis and integration of diverse biological information. Nucleic Acids Research 37(Web-Server-Issue): 317-322 (2009)
2008
53EELaura Fernandez-de-Manuel, María J. Ledesma-Carbayo, Julian Atienza-Herrero, Carlos Oscar Sánchez Sorzano, José María Carazo, Andrés Santos: Flexible image registration for the identification of best fitted protein models in 3D-EM maps. ISBI 2008: 983-986
52EEMonica Chagoyen, José María Carazo, Alberto D. Pascual-Montano: Assessment of protein set coherence using functional annotations. BMC Bioinformatics 9: (2008)
51EEFederico Abascal, Pedro Carmona-Saez, José María Carazo, Alberto D. Pascual-Montano: ChIPCodis: mining complex regulatory systems in yeast by concurrent enrichment analysis of chip-on-chip data. Bioinformatics 24(9): 1208-1209 (2008)
50EECarlos Oscar Sánchez Sorzano, Javier A. Velázquez-Muriel, Roberto Marabini, Gabor T. Herman, José María Carazo: Volumetric restrictions in single particle 3DEM reconstruction. Pattern Recognition 41(2): 616-626 (2008)
2007
49EEJosé-Jesús Fernández, Inmaculada García, José María Carazo, Roberto Marabini: Electron tomography of complex biological specimens on the Grid. Future Generation Comp. Syst. 23(3): 435-446 (2007)
48EEJose-Roman Bilbao-Castro, A. Merino, Inmaculada García, José María Carazo, José-Jesús Fernández: Parameter optimization in 3D reconstruction on a large scale grid. Parallel Computing 33(4-5): 250-263 (2007)
2006
47EEIgnacio Arganda-Carreras, Carlos Oscar Sánchez Sorzano, Roberto Marabini, José María Carazo, Carlos Ortiz-de-Solorzano, Jan Kybic: Consistent and Elastic Registration of Histological Sections Using Vector-Spline Regularization. CVAMIA 2006: 85-95
46EEBartosz Telenczuk, María J. Ledesma-Carbayo, Javier A. Velázquez-Muriel, Carlos Oscar Sánchez Sorzano, José María Carazo, Andrés Santos: Molecular image registration using mutual information and differential evolution optimization. ISBI 2006: 844-847
45EECarlos Oscar Sánchez Sorzano, Roberto Marabini, Alberto D. Pascual-Montano, Sjors H. W. Scheres, José María Carazo: Optimization problems in electron microscopy of single particles. Annals OR 148(1): 133-165 (2006)
44EEMonica Chagoyen, Pedro Carmona-Saez, Hagit Shatkay, José María Carazo, Alberto D. Pascual-Montano: Discovering semantic features in the literature: a foundation for building functional associations. BMC Bioinformatics 7: 41 (2006)
43EEPedro Carmona-Saez, Monica Chagoyen, Andrés Rodríguez, Oswaldo Trelles, José María Carazo, Alberto D. Pascual-Montano: Integrated analysis of gene expression by association rules discovery. BMC Bioinformatics 7: 54 (2006)
42EEPedro Carmona-Saez, Roberto D. Pascual-Marqui, Francisco Tirado, José María Carazo, Alberto D. Pascual-Montano: Biclustering of gene expression data by non-smooth non-negative matrix factorization. BMC Bioinformatics 7: 78 (2006)
41EEAlberto D. Pascual-Montano, José María Carazo, Kieko Kochi, Dietrich Lehmann, Roberto D. Pascual-Marqui: Nonsmooth Nonnegative Matrix Factorization (nsNMF). IEEE Trans. Pattern Anal. Mach. Intell. 28(3): 403-415 (2006)
2005
40EESjors H. W. Scheres, A. J. Merino, Carlos Oscar Sánchez Sorzano, José María Carazo: Grid Computing in 3D-EM Image Processing Using Xmipp. CBMS 2005: 561-563
39EEAlberto D. Pascual-Montano, Francisco Tirado, Pedro Carmona-Saez, José María Carazo, Roberto D. Pascual-Marqui: Two-way clustering of gene expression profiles by sparse matrix factorization. CSB Workshops 2005: 103-104
38EEJavier A. Velázquez-Muriel, José María Carazo: Extending the incorporation of superfamily structural information in the process of flexible fitting in 3D-EM. CSB Workshops 2005: 209-210
37EESjors H. W. Scheres, Mikel Valle, José María Carazo: Fast maximum-likelihood refinement of electron microscopy images. ECCB/JBI 2005: 244
36EEAndrés Rodríguez, José María Carazo, Oswaldo Trelles-Salazar: Mining association rules from biological databases. JASIST 56(5): 493-504 (2005)
35EECarlos Oscar Sánchez Sorzano, Roberto Marabini, Gabor T. Herman, José María Carazo: Multiobjective algorithm parameter optimization using multivariate statistics in three-dimensional electron microscopy reconstruction. Pattern Recognition 38(12): 2587-2601 (2005)
2004
34EEJose-Roman Bilbao-Castro, José María Carazo, José-Jesús Fernández, Inmaculada García: Parallelization and Comparison of 3D Iterative Reconstruction Algorithms. PDP 2004: 96-102
33EEMonica Chagoyen, M. Erdem Kurul, Pedro A. de Alarcón, José María Carazo, Amarnath Gupta: Designing and executing scientific workflows with a programmable integrator. Bioinformatics 20(13): 2092-2100 (2004)
32EERoberto Marabini, Carlos Oscar Sánchez Sorzano, Samuel Matej, José-Jesús Fernández, José María Carazo, Gabor T. Herman: 3-D reconstruction of 2-D crystals in real space. IEEE Transactions on Image Processing 13(4): 549-561 (2004)
31EEJosé-Jesús Fernández, José María Carazo, Inmaculada García: Three-dimensional reconstruction of cellular structures by electron microscope tomography and parallel computing. J. Parallel Distrib. Comput. 64(2): 285-300 (2004)
30EEJosé-Jesús Fernández, Jose-Roman Bilbao-Castro, Roberto Marabini, José María Carazo, Inmaculada García: Biological Structure Determination by EM is Well Suited to Grid Computing. New Generation Comput. 22(2): (2004)
29EEJosé-Jesús Fernández, Jose-Roman Bilbao-Castro, Roberto Marabini, José María Carazo, Inmaculada García: On the Suitability of Biological Structure Determination by Electron Microscopy to Grid Computing. New Generation Comput. 23(1): (2004)
28EEJose-Roman Bilbao-Castro, Roberto Marabini, José María Carazo, Inmaculada García, José-Jesús Fernández: The Potential Of Grid Computing In Three-Dimensional Electron Microscopy. Parallel Processing Letters 14(2): 151-162 (2004)
2003
27EEMonica Chagoyen, M. Erdem Kurul, Pedro A. de Alarcón, Simone Santini, Bertram Ludäscher, José María Carazo, Amarnath Gupta: A Semantic Mediation Approach for Problems in Computational Molecular Biology. CSB 2003: 386-387
26EEJosé-Jesús Fernández, Jose-Roman Bilbao-Castro, Roberto Marabini, José María Carazo, Inmaculada García: Grid Computing in Structure Determination of Biological Specimens by Electron Microscope Tomography. European Across Grids Conference 2003: 171-181
25 Jose-Roman Bilbao-Castro, José María Carazo, Inmaculada García, José-Jesús Fernández: Parallel iterative reconstruction methods for structure determination of biological specimens by electron microscopy. ICIP (1) 2003: 565-568
24 Jorge García de la Nava, Daniel Franco Santaella, Jesús Cuenca Alba, José María Carazo, Oswaldo Trelles, Alberto D. Pascual-Montano: Engene: the processing and exploratory analysis of gene expression data. Bioinformatics 19(5): 657-658 (2003)
2002
23EEPedro A. de Alarcón, Alberto D. Pascual-Montano, José María Carazo: Spin Images and Neural Networks for Efficient Content-Based Retrieval in 3D Object Databases. CIVR 2002: 225-234
22EEPedro A. de Alarcón, Alberto D. Pascual-Montano, Amarnath Gupta, José María Carazo: Modeling Shape and Topology of 3D Images of Biological Specimens. ICPR (1) 2002: 79-82
21EERoberto Marabini, Gabor T. Herman, Carlos Oscar Sánchez Sorzano, José María Carazo: Volumetric constraints in 3D tomography applied to electron microscopy. ISBI 2002: 641-644
20EERoberto Marabini, Gabor T. Herman, Carlos Oscar Sánchez Sorzano, José María Carazo, José-Jesús Fernández, Samuel Matej: 3D reconstruction of 2D crystals from projections in real space. ISBI 2002: 689-692
19EEJosé-Jesús Fernández, Albert F. Lawrence, Javier Roca Piera, Inmaculada García, Mark H. Ellisman, José María Carazo: High Performance Computing in Electron Microscope Tomography of Complex Biological Structures. VECPAR 2002: 166-180
18 Carlos Oscar Sánchez Sorzano, José María Carazo, Oswaldo Trelles: Command-line interfaces can be efficiently brought to graphics: COLIMATE (the COmmand LIne MATE). Softw., Pract. Exper. 32(9): 873-887 (2002)
2001
17EERoberto D. Pascual-Marqui, Alberto D. Pascual-Montano, Kieko Kochi, José María Carazo: Smoothly distributed fuzzy c-means: a new self-organizing map. Pattern Recognition 34(12): 2395-2402 (2001)
1999
16EEAlberto Pascual, Montserrat Barcéna, Juan J. Merelo Guervós, José María Carazo: Application of the Fuzzy Kohonen Clustering Network to Biological Macromolecules Images Classification. IWANN (2) 1999: 331-340
15EEJuan J. Merelo Guervós, Víctor Manuel Rivas Santos, Gustavo Romero, Pedro A. Castillo Valdivieso, Alberto Pascual, José María Carazo: Improved Automatic Classification of Biological Particles from Electron-Microscopy Images Using Genetic Neural Nets. IWANN (2) 1999: 373-382
14 José María Carazo, Ernst H. K. Stelzer, A. Engel, I. Fita, C. Henn, J. Machtynger, P. McNeil, David M. Shotton, Monica Chagoyen, Pedro A. de Alarcón, R. Fritsch, J. B. Heymann, S. Kalko, J. J. Pittet, Patricia Rodriguez-Tomé, Thomas Boudier: Organising multi-dimensional biological image information: the BioImage Database. Nucleic Acids Research 27(1): 280-283 (1999)
1998
13 S. Lindek, R. Fritsch, Ernst H. K. Stelzer, José María Carazo, A. Engel, I. Fita, C. Henn, P. McNeil, David M. Shotton, J. Machtynger: Biolmage, the database of biological microscopy data. German Conference on Bioinformatics 1998
12 Huaichun Wang, Joaquín Dopazo, José María Carazo: Self-organizing tree growing network for classifying amino acids. Bioinformatics 14(4): 376-377 (1998)
11 Oswaldo Trelles, Miguel A. Andrade, Alfonso Valencia, Emilio L. Zapata, José María Carazo: Computational space reduction and parallelization of a new clustering approach for large groups of sequences. Bioinformatics 14(5): 439-451 (1998)
10 Oswaldo Trelles, C. Ceron, Huaichun Wang, Joaquín Dopazo, José María Carazo: New phylogenetic venues opened by a novel implementation of the DNAml algorithm. Bioinformatics 14(6): 544-545 (1998)
9 Juan J. Merelo Guervós, Alberto Prieto, Federico Morán, Roberto Marabini, José María Carazo: Automatic Classification of Biological Particles from Electron-microscopy Images Using Conventional and Genetic-algorithm Optimized Learning Vector Quantization. Neural Processing Letters 8(1): 55-65 (1998)
8 C. Ceron, Joaquín Dopazo, Emilio L. Zapata, José María Carazo, Oswaldo Trelles: Parallel Implementation of DNAml Program on Message-Passing Architectures. Parallel Computing 24(5-6): 701-716 (1998)
1997
7EEJuan J. Merelo Guervós, Alberto Prieto, Federico Morán, Roberto Marabini, José María Carazo: A GA-optimized Neural Network for Classification of Biological Particles from Electron-Microscopy Images. IWANN 1997: 1174-1182
6EEJoaquín Dopazo, Huaichun Wang, José María Carazo: A New Type of Unsupervised Growing Neural Network for Biological Sequence Classification That Adopts the Topology of a Phylogenetic Tree. IWANN 1997: 932-941
1996
5EERoberto Marabini, José María Carazo: On a new computationally fast image invariant based on bispectral projections. Pattern Recognition Letters 17(9): 959-967 (1996)
1995
4 Oswaldo Trelles-Salazar, Emilio L. Zapata, Joaquín Dopazo, A. F. Coulson, José María Carazo: An image-processing approach to dotplots: an X-Window-based program for interactive analysis of dotplots derived from sequence and structural data. Computer Applications in the Biosciences 11(3): 301-308 (1995)
1994
3 Oswaldo Trelles-Salazar, Emilio L. Zapata, José María Carazo: Mapping Strategies for Sequential Sequence Comparison Algorithms on LAN-Based Message Passing Architectures. HPCN 1994: 197-202
2 Oswaldo Trelles-Salazar, Emilio L. Zapata, José María Carazo: On an efficient parallelization of exhaustive sequence comparison algorithms on message passing architectures. Computer Applications in the Biosciences 10(5): 509-511 (1994)
1990
1EEFrancisco F. Rivera, Emilio L. Zapata, José María Carazo: Cluster validity based on the hard tendency of the fuzzy classification. Pattern Recognition Letters 11(1): 7-12 (1990)

Coauthor Index

1Federico Abascal [51] [56]
2Pedro A. de Alarcón [14] [22] [23] [27] [33]
3Jesús Cuenca Alba [24]
4Miguel A. Andrade-Navarro (Miguel A. Andrade) [11]
5Ignacio Arganda-Carreras [47]
6Julian Atienza-Herrero [53]
7Montserrat Barcéna [16]
8Jose-Roman Bilbao-Castro [25] [26] [28] [29] [30] [34] [48] [58]
9Thomas Boudier [14]
10Pedro Carmona-Saez [39] [42] [43] [44] [51] [54] [55]
11C. Ceron [8] [10]
12Monica Chagoyen [14] [27] [33] [43] [44] [52] [55]
13A. F. Coulson [4]
14Javier Díez-Pérez [56]
15Joaquín Dopazo [4] [6] [8] [10] [12]
16Matthias Eibauer [58]
17Mark H. Ellisman [19]
18A. Engel [13] [14]
19José-Jesús Fernández [19] [20] [25] [26] [28] [29] [30] [31] [32] [34] [48] [49]
20Laura Fernandez-de-Manuel [53]
21I. Fita [13] [14]
22R. Fritsch [13] [14]
23Inmaculada García (Inmaculada García Fernández) [19] [25] [26] [28] [29] [30] [31] [34] [48] [49]
24Juan Julián Merelo Guervós (Juan J. Merelo Guervós) [7] [9] [15] [16]
25Amarnath Gupta [22] [27] [33]
26Reiner Hegerl [58]
27C. Henn [13] [14]
28Gabor T. Herman [20] [21] [32] [35] [50]
29J. B. Heymann [14]
30Natalia Jiménez-Lozano [57]
31S. Kalko [14]
32Kieko Kochi [17] [41]
33M. Erdem Kurul [27] [33]
34Jan Kybic [47]
35Albert F. Lawrence [19]
36María J. Ledesma-Carbayo [46] [53]
37Dietrich Lehmann [41]
38S. Lindek [13]
39Bertram Ludäscher [27]
40J. Machtynger [13] [14]
41José Ramón Macías [57]
42Roberto Marabini [5] [7] [9] [20] [21] [26] [28] [29] [30] [32] [35] [45] [47] [49] [50]
43Sergio Marco [58]
44Samuel Matej [20] [32]
45P. McNeil [13] [14]
46A. Merino [48]
47A. J. Merino [40]
48Cédric Messaoudi [58]
49Federico Morán [7] [9]
50Jorge García de la Nava [24]
51S. Nickell [58]
52Rubén Nogales-Cadenas [54] [55] [56]
53Carlos Ortiz-de-Solorzano [47]
54Alberto Pascual [15] [16]
55Roberto D. Pascual-Marqui [17] [39] [41] [42]
56Alberto D. Pascual-Montano [17] [22] [23] [24] [39] [41] [42] [43] [44] [45] [51] [52] [54] [55] [56]
57Javier Roca Piera [19]
58J. J. Pittet [14]
59Alberto Prieto [7] [9]
60Francisco F. Rivera [1]
61Andrés Rodríguez [36] [43]
62Patricia Rodriguez-Tomé [14]
63Gustavo Romero [15]
64Daniel Franco Santaella [24]
65Simone Santini [27]
66Andrés Santos [46] [53]
67Víctor Manuel Rivas Santos (Víctor M. Rivas) [15]
68Sjors H. W. Scheres [37] [40] [45]
69Joan Segura [57]
70Hagit Shatkay [44]
71David M. Shotton [13] [14]
72Carlos Oscar Sánchez Sorzano [18] [20] [21] [32] [35] [40] [45] [46] [47] [50] [53] [58]
73Ernst H. K. Stelzer [13] [14]
74Bartosz Telenczuk [46]
75Francisco Tirado [39] [42] [54] [55]
76Oswaldo Trelles (Oswaldo Trelles-Salazar) [2] [3] [4] [8] [10] [11] [18] [24] [36] [43]
77Pedro A. Castillo Valdivieso (Pedro A. Castillo) [15]
78Alfonso Valencia [11]
79Mikel Valle [37]
80Miguel Vazquez [54] [55]
81Juanjo Vega [57]
82Javier A. Velázquez-Muriel [38] [46] [50]
83Cesar Vicente [54]
84Huaichun Wang [6] [10] [12]
85Xiaoyuan Yang [54]
86Emilio L. Zapata [1] [2] [3] [4] [8] [11]

Colors in the list of coauthors

Copyright © Tue Nov 3 08:52:44 2009 by Michael Ley (ley@uni-trier.de)