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Stephen H. Bryant Vis

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*2009
23 Yanli Wang, Stephen H. Bryant: PubChem: The NIH Public Repository for Small Molecules and Biological Screening Results. BIOCOMP 2009: 726-728
22EELianyi Han, Yanli Wang, Stephen H. Bryant: A survey of across-target bioactivity results of small molecules in PubChem. Bioinformatics 25(17): 2251-2255 (2009)
21EEAron Marchler-Bauer, John B. Anderson, Farideh Chitsaz, Myra K. Derbyshire, Carol DeWeese-Scott, Jessica H. Fong, Lewis Y. Geer, Renata C. Geer, Noreen R. Gonzales, Marc Gwadz, Siqian He, David I. Hurwitz, John D. Jackson, Zhaoxi Ke, Christopher J. Lanczycki, Cynthia A. Liebert, Chunlei Liu, Fu Lu, Shennan Lu, Gabriele H. Marchler, Mikhail Mullokandov, James S. Song, Asba Tasneem, Narmada Thanki, Roxanne A. Yamashita, Dachuan Zhang, Naigong Zhang, Stephen H. Bryant: CDD: specific functional annotation with the Conserved Domain Database. Nucleic Acids Research 37(Database-Issue): 205-210 (2009)
20EEEric W. Sayers, Tanya Barrett, Dennis A. Benson, Stephen H. Bryant, Kathi Canese, Vyacheslav Chetvernin, Deanna M. Church, Michael DiCuccio, Ron Edgar, Scott Federhen, Michael Feolo, Lewis Y. Geer, Wolfgang Helmberg, Yuri Kapustin, David Landsman, David J. Lipman, Thomas L. Madden, Donna R. Maglott, Vadim Miller, Ilene Karsch-Mizrachi, James Ostell, Kim D. Pruitt, Gregory D. Schuler, Edwin Sequeira, Stephen T. Sherry, Martin Shumway, Karl Sirotkin, Alexandre Souvorov, Grigory Starchenko, Tatiana A. Tatusova, Lukas Wagner, Eugene Yaschenko, Jian Ye: Database resources of the National Center for Biotechnology Information. Nucleic Acids Research 37(Database-Issue): 5-15 (2009)
19EEYanli Wang, Jewen Xiao, Tugba O. Suzek, Jian Zhang, Jiyao Wang, Stephen H. Bryant: PubChem: a public information system for analyzing bioactivities of small molecules. Nucleic Acids Research 37(Web-Server-Issue): 623-633 (2009)
2008
18EELianyi Han, Yanli Wang, Stephen H. Bryant: Developing and validating predictive decision tree models from mining chemical structural fingerprints and high-throughput screening data in PubChem. BMC Bioinformatics 9: (2008)
17EEDavid L. Wheeler, Tanya Barrett, Dennis A. Benson, Stephen H. Bryant, Kathi Canese, Vyacheslav Chetvernin, Deanna M. Church, Michael DiCuccio, Ron Edgar, Scott Federhen, Michael Feolo, Lewis Y. Geer, Wolfgang Helmberg, Yuri Kapustin, Oleg Khovayko, David Landsman, David J. Lipman, Thomas L. Madden, Donna R. Maglott, Vadim Miller, James Ostell, Kim D. Pruitt, Gregory D. Schuler, Martin Shumway, Edwin Sequeira, Steven T. Sherry, Karl Sirotkin, Alexandre Souvorov, Grigory Starchenko, Roman L. Tatusov, Tatiana A. Tatusova, Lukas Wagner, Eugene Yaschenko: Database resources of the National Center for Biotechnology Information. Nucleic Acids Research 36(Database-Issue): 13-21 (2008)
2007
16EEAron Marchler-Bauer, John B. Anderson, Myra K. Derbyshire, Carol DeWeese-Scott, Noreen R. Gonzales, Marc Gwadz, Luning Hao, Siqian He, David I. Hurwitz, John D. Jackson, Zhaoxi Ke, Dmitri M. Krylov, Christopher J. Lanczycki, Cynthia A. Liebert, Chunlei Liu, Fu Lu, Shennan Lu, Gabriele H. Marchler, Mikhail Mullokandov, James S. Song, Narmada Thanki, Roxanne A. Yamashita, Jodie J. Yin, Dachuan Zhang, Stephen H. Bryant: CDD: a conserved domain database for interactive domain family analysis. Nucleic Acids Research 35(Database-Issue): 237-240 (2007)
15EEYanli Wang, Kenneth J. Addess, Jie Chen, Lewis Y. Geer, Jane He, Siqian He, Shennan Lu, Thomas Madej, Aron Marchler-Bauer, Paul A. Thiessen, Naigong Zhang, Stephen H. Bryant: MMDB: annotating protein sequences with Entrez's 3D-structure database. Nucleic Acids Research 35(Database-Issue): 298-300 (2007)
14EEDavid L. Wheeler, Tanya Barrett, Dennis A. Benson, Stephen H. Bryant, Kathi Canese, Vyacheslav Chetvernin, Deanna M. Church, Michael DiCuccio, Ron Edgar, Scott Federhen, Lewis Y. Geer, Yuri Kapustin, Oleg Khovayko, David Landsman, David J. Lipman, Thomas L. Madden, Donna R. Maglott, James Ostell, Vadim Miller, Kim D. Pruitt, Gregory D. Schuler, Edwin Sequeira, Steven T. Sherry, Karl Sirotkin, Alexandre Souvorov, Grigory Starchenko, Roman L. Tatusov, Tatiana A. Tatusova, Lukas Wagner, Eugene Yaschenko: Database resources of the National Center for Biotechnology Information. Nucleic Acids Research 35(Database-Issue): 5-12 (2007)
2006
13EEDavid L. Wheeler, Tanya Barrett, Dennis A. Benson, Stephen H. Bryant, Kathi Canese, Vyacheslav Chetvernin, Deanna M. Church, Michael DiCuccio, Ron Edgar, Scott Federhen, Lewis Y. Geer, Wolfgang Helmberg, Yuri Kapustin, David L. Kenton, Oleg Khovayko, David J. Lipman, Thomas L. Madden, Donna R. Maglott, James Ostell, Kim D. Pruitt, Gregory D. Schuler, Lynn M. Schriml, Edwin Sequeira, Stephen T. Sherry, Karl Sirotkin, Alexandre Souvorov, Grigory Starchenko, Tugba O. Suzek, Roman L. Tatusov, Tatiana A. Tatusova, Lukas Wagner, Eugene Yaschenko: Database resources of the National Center for Biotechnology Information. Nucleic Acids Research 34(Database-Issue): 173-180 (2006)
2005
12EEMaricel G. Kann, Paul A. Thiessen, Anna R. Panchenko, Alejandro A. Schäffer, Stephen F. Altschul, Stephen H. Bryant: A structure-based method for protein sequence alignment. Bioinformatics 21(8): 1451-1456 (2005)
11EEAron Marchler-Bauer, John B. Anderson, Praveen F. Cherukuri, Carol DeWeese-Scott, Lewis Y. Geer, Marc Gwadz, Siqian He, David I. Hurwitz, John D. Jackson, Zhaoxi Ke, Christopher J. Lanczycki, Cynthia A. Liebert, Chunlei Liu, Fu Lu, Gabriele H. Marchler, Mikhail Mullokandov, Benjamin A. Shoemaker, Vahan Simonyan, James S. Song, Paul A. Thiessen, Roxanne A. Yamashita, Jodie J. Yin, Dachuan Zhang, Stephen H. Bryant: CDD: a Conserved Domain Database for protein classification. Nucleic Acids Research 33(Database-Issue): 192-196 (2005)
10EEDavid L. Wheeler, Tanya Barrett, Dennis A. Benson, Stephen H. Bryant, Kathi Canese, Deanna M. Church, Michael DiCuccio, Ron Edgar, Scott Federhen, Wolfgang Helmberg, David L. Kenton, Oleg Khovayko, David J. Lipman, Thomas L. Madden, Donna R. Maglott, James Ostell, Joan U. Pontius, Kim D. Pruitt, Gregory D. Schuler, Lynn M. Schriml, Edwin Sequeira, Steven T. Sherry, Karl Sirotkin, Grigory Starchenko, Tugba O. Suzek, Roman L. Tatusov, Tatiana A. Tatusova, Lukas Wagner, Eugene Yaschenko: Database resources of the National Center for Biotechnology Information. Nucleic Acids Research 33(Database-Issue): 39-45 (2005)
2004
9 Aron Marchler-Bauer, Stephen H. Bryant: CD-Search: protein domain annotations on the fly. Nucleic Acids Research 32(Web-Server-Issue): 327-331 (2004)
2003
8 Aron Marchler-Bauer, John B. Anderson, Carol DeWeese-Scott, Natalie D. Fedorova, Lewis Y. Geer, Siqian He, David I. Hurwitz, John D. Jackson, Aviva R. Jacobs, Christopher J. Lanczycki, Cynthia A. Liebert, Chunlei Liu, Thomas Madej, Gabriele H. Marchler, Raja Mazumder, Anastasia N. Nikolskaya, Anna R. Panchenko, Bachoti S. Rao, Benjamin A. Shoemaker, Vahan Simonyan, James S. Song, Paul A. Thiessen, Sona Vasudevan, Yanli Wang, Roxanne A. Yamashita, Jodie J. Yin, Stephen H. Bryant: CDD: a curated Entrez database of conserved domain alignments. Nucleic Acids Research 31(1): 383-387 (2003)
7 Jie Chen, John B. Anderson, Carol DeWeese-Scott, Natalie D. Fedorova, Lewis Y. Geer, Siqian He, David I. Hurwitz, John D. Jackson, Aviva R. Jacobs, Christopher J. Lanczycki, Cynthia A. Liebert, Chunlei Liu, Thomas Madej, Aron Marchler-Bauer, Gabriele H. Marchler, Raja Mazumder, Anastasia N. Nikolskaya, Bachoti S. Rao, Anna R. Panchenko, Benjamin A. Shoemaker, Vahan Simonyan, James S. Song, Paul A. Thiessen, Sona Vasudevan, Yanli Wang, Roxanne A. Yamashita, Jodie J. Yin, Stephen H. Bryant: MMDB: Entrez's 3D-structure database. Nucleic Acids Research 31(1): 474-477 (2003)
2002
6 Yanli Wang, John B. Anderson, Jie Chen, Lewis Y. Geer, Siqian He, David I. Hurwitz, Cynthia A. Liebert, Thomas Madej, Gabriele H. Marchler, Aron Marchler-Bauer, Anna R. Panchenko, Benjamin A. Shoemaker, James S. Song, Paul A. Thiessen, Roxanne A. Yamashita, Stephen H. Bryant: MMDB: Entrez's 3D-structure database. Nucleic Acids Research 30(1): 249-252 (2002)
5 Aron Marchler-Bauer, Anna R. Panchenko, Benjamin A. Shoemaker, Paul A. Thiessen, Lewis Y. Geer, Stephen H. Bryant: CDD: a database of conserved domain alignments with links to domain three-dimensional structure. Nucleic Acids Research 30(1): 281-283 (2002)
2000
4 S. J. Wheelan, Aron Marchler-Bauer, Stephen H. Bryant: Domain size distributions can predict domain boundaries. Bioinformatics 16(7): 613-618 (2000)
3 Yanli Wang, Kenneth J. Addess, Lewis Y. Geer, Thomas Madej, Aron Marchler-Bauer, Diane Zimmerman, Stephen H. Bryant: MMDB: 3D structure data in Entrez. Nucleic Acids Research 28(1): 243-245 (2000)
1999
2 Aron Marchler-Bauer, Kenneth J. Addess, Colombe Chappey, Lewis Y. Geer, Thomas Madej, Yo Matsuo, Yanli Wang, Stephen H. Bryant: MMDB: Entrez's 3D structure database. Nucleic Acids Research 27(1): 240-243 (1999)
1995
1 Hitomi Ohkawa, James Ostell, Stephen H. Bryant: MMDB: An ASN.1 Specification for Macromolecular Structure. ISMB 1995: 259-267

Coauthor Index

1Kenneth J. Addess [2] [3] [15]
2Stephen F. Altschul [12]
3John B. Anderson [6] [7] [8] [11] [16] [21]
4Tanya Barrett [10] [13] [14] [17] [20]
5Dennis A. Benson [10] [13] [14] [17] [20]
6Kathi Canese [10] [13] [14] [17] [20]
7Colombe Chappey [2]
8Jie Chen [6] [7] [15]
9Praveen F. Cherukuri [11]
10Vyacheslav Chetvernin [13] [14] [17] [20]
11Farideh Chitsaz [21]
12Deanna M. Church [10] [13] [14] [17] [20]
13Carol DeWeese-Scott [7] [8] [11] [16] [21]
14Myra K. Derbyshire [16] [21]
15Michael DiCuccio [10] [13] [14] [17] [20]
16Ron Edgar [10] [13] [14] [17] [20]
17Scott Federhen [10] [13] [14] [17] [20]
18Natalie D. Fedorova [7] [8]
19Michael Feolo [17] [20]
20Jessica H. Fong [21]
21Lewis Y. Geer [2] [3] [5] [6] [7] [8] [11] [13] [14] [15] [17] [20] [21]
22Renata C. Geer [21]
23Noreen R. Gonzales [16] [21]
24Marc Gwadz [11] [16] [21]
25Lianyi Han [18] [22]
26Luning Hao [16]
27Jane He [15]
28Siqian He [6] [7] [8] [11] [15] [16] [21]
29Wolfgang Helmberg [10] [13] [17] [20]
30David I. Hurwitz [6] [7] [8] [11] [16] [21]
31John D. Jackson [7] [8] [11] [16] [21]
32Aviva R. Jacobs [7] [8]
33Maricel G. Kann [12]
34Yuri Kapustin [13] [14] [17] [20]
35Ilene Karsch-Mizrachi [20]
36Zhaoxi Ke [11] [16] [21]
37David L. Kenton [10] [13]
38Oleg Khovayko [10] [13] [14] [17]
39Dmitri M. Krylov [16]
40Christopher J. Lanczycki [7] [8] [11] [16] [21]
41David Landsman [14] [17] [20]
42Cynthia A. Liebert [6] [7] [8] [11] [16] [21]
43David J. Lipman [10] [13] [14] [17] [20]
44Chunlei Liu [7] [8] [11] [16] [21]
45Fu Lu [11] [16] [21]
46Shennan Lu [15] [16] [21]
47Thomas L. Madden [10] [13] [14] [17] [20]
48Thomas Madej [2] [3] [6] [7] [8] [15]
49Donna R. Maglott [10] [13] [14] [17] [20]
50Gabriele H. Marchler [6] [7] [8] [11] [16] [21]
51Aron Marchler-Bauer [2] [3] [4] [5] [6] [7] [8] [9] [11] [15] [16] [21]
52Yo Matsuo [2]
53Raja Mazumder [7] [8]
54Vadim Miller [14] [17] [20]
55Mikhail Mullokandov [11] [16] [21]
56Anastasia N. Nikolskaya [7] [8]
57Hitomi Ohkawa [1]
58James Ostell [1] [10] [13] [14] [17] [20]
59Anna R. Panchenko [5] [6] [7] [8] [12]
60Joan U. Pontius [10]
61Kim D. Pruitt [10] [13] [14] [17] [20]
62Bachoti S. Rao [7] [8]
63Eric W. Sayers [20]
64Alejandro A. Schäffer [12]
65Lynn M. Schriml [10] [13]
66Gregory D. Schuler [10] [13] [14] [17] [20]
67Edwin Sequeira [10] [13] [14] [17] [20]
68Stephen T. Sherry [13] [20]
69Steven T. Sherry [10] [14] [17]
70Benjamin A. Shoemaker [5] [6] [7] [8] [11]
71Martin Shumway [17] [20]
72Vahan Simonyan [7] [8] [11]
73Karl Sirotkin [10] [13] [14] [17] [20]
74James S. Song [6] [7] [8] [11] [16] [21]
75Alexandre Souvorov [13] [14] [17] [20]
76Grigory Starchenko [10] [13] [14] [17] [20]
77Tugba O. Suzek [10] [13] [19]
78Asba Tasneem [21]
79Roman L. Tatusov [10] [13] [14] [17]
80Tatiana A. Tatusova [10] [13] [14] [17] [20]
81Narmada Thanki [16] [21]
82Paul A. Thiessen [5] [6] [7] [8] [11] [12] [15]
83Sona Vasudevan [7] [8]
84Lukas Wagner [10] [13] [14] [17] [20]
85Jiyao Wang [19]
86Yanli Wang [2] [3] [6] [7] [8] [15] [18] [19] [22] [23]
87S. J. Wheelan [4]
88David L. Wheeler [10] [13] [14] [17]
89Jewen Xiao [19]
90Roxanne A. Yamashita [6] [7] [8] [11] [16] [21]
91Eugene Yaschenko [10] [13] [14] [17] [20]
92Jian Ye [20]
93Jodie J. Yin [7] [8] [11] [16]
94Dachuan Zhang [11] [16] [21]
95Jian Zhang [19]
96Naigong Zhang [15] [21]
97Diane Zimmerman [3]

Copyright © Tue Nov 3 08:52:44 2009 by Michael Ley (ley@uni-trier.de)