| * | 2009 |
|---|
| 39 | | Denise Y. F. Mak,
Gary Benson:
Consensus RNA Secondary Structure Prediction by Ranking k-Length Stems.
BIOCOMP 2009: 521-527 |
| 38 | EE | Denise Y. F. Mak,
Gary Benson:
All hits all the time: parameter-free calculation of spaced seed sensitivity.
Bioinformatics 25(3): 302-308 (2009) |
| 37 | EE | Gary Benson:
Nucleic Acids Research annual Web Server Issue in 2009.
Nucleic Acids Research 37(Web-Server-Issue): 1-2 (2009) |
| 2008 |
|---|
| 36 | EE | Gary Benson,
Denise Y. F. Mak:
Exact Distribution of a Spaced Seed Statistic for DNA Homology Detection.
SPIRE 2008: 282-293 |
| 35 | EE | Gary Benson:
Editorial.
Nucleic Acids Research 36(Web-Server-Issue): 1 (2008) |
| 2007 |
|---|
| 34 | EE | Denise Y. F. Mak,
Gary Benson:
All Hits All The Time: Parameter Free Calculation of Seed Sensitivity.
APBC 2007: 327-340 |
| 33 | EE | Benjamin B. Andken,
In Lim,
Gary Benson,
John J. Vincent,
Matthew T. Ferenc,
Bianca Heinrich,
Larissa A. Jarzylo,
Heng-Ye Man,
James O. Deshler:
3'-UTR SIRF: A database for identifying clusters of short interspersed repeats in 3' untranslated regions.
BMC Bioinformatics 8: (2007) |
| 32 | EE | Waibhav Tembe,
Nela Zavaljevski,
Elizabeth A. Bode,
Catherine Chase,
Jeanne Geyer,
Leonard P. Wasieloski,
Gary Benson,
Jaques Reifman:
Oligonucleotide fingerprint identification for microarray-based pathogen diagnostic assays.
Bioinformatics 23(1): 5-13 (2007) |
| 31 | EE | Dina Sokol,
Gary Benson,
Justin Tojeira:
Tandem repeats over the edit distance.
Bioinformatics 23(2): 30-35 (2007) |
| 30 | EE | Yevgeniy Gelfand,
Alfredo Rodriguez,
Gary Benson:
TRDB - The Tandem Repeats Database.
Nucleic Acids Research 35(Database-Issue): 80-87 (2007) |
| 29 | EE | Gary Benson:
Editorial.
Nucleic Acids Research 35(Web-Server-Issue): 1 (2007) |
| 2006 |
|---|
| 28 | EE | Panagiotis Papapetrou,
Gary Benson,
George Kollios:
Discovering Frequent Poly-Regions in DNA Sequences.
ICDM Workshops 2006: 94-98 |
| 27 | EE | Denise Y. F. Mak,
Yevgeniy Gelfand,
Gary Benson:
Indel seeds for homology search.
ISMB (Supplement of Bioinformatics) 2006: 341-349 |
| 26 | EE | Amihood Amir,
Yonatan Aumann,
Gary Benson,
Avivit Levy,
Ohad Lipsky,
Ely Porat,
Steven Skiena,
Uzi Vishne:
Pattern matching with address errors: rearrangement distances.
SODA 2006: 1221-1229 |
| 2005 |
|---|
| 25 | EE | Gary Benson:
Tandem cyclic alignment.
Discrete Applied Mathematics 146(2): 124-133 (2005) |
| 2003 |
|---|
| 24 | | Gary Benson,
Roderic D. M. Page:
Algorithms in Bioinformatics, Third International Workshop, WABI 2003, Budapest, Hungary, September 15-20, 2003, Proceedings
Springer 2003 |
| 23 | EE | Gary Benson:
Composition Alignment.
WABI 2003: 447-461 |
| 2002 |
|---|
| 22 | | Gary Benson:
A new distance measure for comparing sequence profiles based on path lengths along an entropy surface.
ECCB 2002: 44-53 |
| 2001 |
|---|
| 21 | EE | Gary Benson:
Tandem Cyclic Alignment.
CPM 2001: 118-130 |
| 1999 |
|---|
| 20 | | Gary Benson,
Lan Dong:
Reconstructing the Duplication History of a Tandem Repeat.
ISMB 1999: 44-53 |
| 1998 |
|---|
| 19 | EE | Gary Benson:
An algorithm for finding tandem repeats of unspecified pattern size.
RECOMB 1998: 20-29 |
| 18 | | Amihood Amir,
Gary Benson,
Martin Farach:
Optimal Parallel Two Dimensional Text Searching on a CREW PRAM.
Inf. Comput. 144(1): 1-17 (1998) |
| 17 | | Gary Benson,
X. Su:
On the Distribution of K-tuple Matches for Sequence Homology: A Constant Time Exact Calculation of the Variance.
Journal of Computational Biology 5(1): 87-100 (1998) |
| 16 | | Amihood Amir,
Gary Benson:
Two-Dimensional Periodicity in Rectangular Arrays.
SIAM J. Comput. 27(1): 90-106 (1998) |
| 1997 |
|---|
| 15 | EE | Gary Benson:
Sequence alignment with tandem duplication.
RECOMB 1997: 27-36 |
| 14 | EE | Fengzhu Sun,
Gary Benson,
Norman Arnheim,
Michael S. Waterman:
Pooling strategies for establishing physical genome maps using FISH.
RECOMB 1997: 294-299 |
| 13 | | Amihood Amir,
Gary Benson,
Martin Farach:
Optimal Two-Dimensional Compressed Matching.
J. Algorithms 24(2): 354-379 (1997) |
| 12 | | Gary Benson:
Sequence Alignment with Tandem Duplication.
Journal of Computational Biology 4(3): 351-368 (1997) |
| 11 | | Fengzhu Sun,
Gary Benson,
Norman Arnheim,
Michael S. Waterman:
Pooling Strategies for Establishing Physical Genome Maps Using FISH.
Journal of Computational Biology 4(4): 467-486 (1997) |
| 1996 |
|---|
| 10 | | Amihood Amir,
Gary Benson,
Martin Farach:
Let Sleeping Files Lie: Pattern Matching in Z-Compressed Files.
J. Comput. Syst. Sci. 52(2): 299-307 (1996) |
| 1995 |
|---|
| 9 | EE | Gary Benson:
A Space Efficient Algorithm for Finding the Best Nonoverlapping Alignment Score.
Theor. Comput. Sci. 145(1&2): 357-369 (1995) |
| 1994 |
|---|
| 8 | | Gary Benson:
A Space Efficient Algorithm for Finding the Best Non-Overlapping Alignment Score.
CPM 1994: 1-14 |
| 7 | EE | Amihood Amir,
Gary Benson,
Martin Farach:
Optimal Two-Dimensional Compressed Matching.
ICALP 1994: 215-226 |
| 6 | | Amihood Amir,
Gary Benson,
Martin Farach:
Let Sleeping Files Lie: Pattern Matching in Z-compressed Files.
SODA 1994: 705-714 |
| 5 | | Amihood Amir,
Gary Benson,
Martin Farach:
An Alphabet Independent Approach to Two-Dimensional Pattern Matching.
SIAM J. Comput. 23(2): 313-323 (1994) |
| 1993 |
|---|
| 4 | EE | Amihood Amir,
Gary Benson,
Martin Farach:
Optimal Parallel Two Dimensional Pattern Matching.
SPAA 1993: 79-85 |
| 1992 |
|---|
| 3 | | Amihood Amir,
Gary Benson:
Efficient Two-Dimensional Compressed Matching.
Data Compression Conference 1992: 279-288 |
| 2 | EE | Amihood Amir,
Gary Benson:
Two-Dimensional Periodicity and Its Applications.
SODA 1992: 440-452 |
| 1 | | Amihood Amir,
Gary Benson,
Martin Farach:
Alphabet Independent Two Dimensional Matching
STOC 1992: 59-68 |
