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David A. Bader Vis

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*2009
86EERick Quax, David A. Bader, Peter M. A. Sloot: Simulating Individual-Based Models of Epidemics in Hierarchical Networks. ICCS (1) 2009: 725-734
85EEKamesh Madduri, David A. Bader: Compact graph representations and parallel connectivity algorithms for massive dynamic network analysis. IPDPS 2009: 1-11
84EESeunghwa Kang, David A. Bader, Richard W. Vuduc: Understanding the design trade-offs among current multicore systems for numerical computations. IPDPS 2009: 1-12
83EEKamesh Madduri, David Ediger, Karl Jiang, David A. Bader, Daniel G. Chavarría-Miranda: A faster parallel algorithm and efficient multithreaded implementations for evaluating betweenness centrality on massive datasets. IPDPS 2009: 1-8
82EESeunghwa Kang, David A. Bader: An efficient transactional memory algorithm for computing minimum spanning forest of sparse graphs. PPOPP 2009: 15-24
81EEAmrita Mathuriya, David A. Bader, Christine E. Heitsch, Stephen C. Harvey: GTfold: a scalable multicore code for RNA secondary structure prediction. SAC 2009: 981-988
80EEVirat Agarwal, David A. Bader, Lin Dan, Lurng-Kuo Liu, Davide Pasetto, Michael Perrone, Fabrizio Petrini: Faster FAST: multicore acceleration of streaming financial data. Computer Science - R&D 23(3-4): 249-257 (2009)
79EEDavid A. Bader, Virat Agarwal, Seunghwa Kang: Computing discrete transforms on the Cell Broadband Engine. Parallel Computing 35(3): 119-137 (2009)
2008
78EEDavid A. Bader: Petascale Computing for Large-Scale Graph Problems. CISIS 2008: 779
77EEDavid A. Bader, Aparna Chandramowlishwaran, Virat Agarwal: On the Design of Fast Pseudo-Random Number Generators for the Cell Broadband Engine and an Application to Risk Analysis. ICPP 2008: 520-527
76EESeunghwa Kang, David A. Bader: Optimizing JPEG2000 Still Image Encoding on the Cell Broadband Engine. ICPP 2008: 83-90
75EEDavid A. Bader, Sulabh Patel: High performance MPEG-2 software decoder on the cell broadband engine. IPDPS 2008: 1-10
74EEVirat Agarwal, Lurng-Kuo Liu, David A. Bader: Financial modeling on the cell broadband engine. IPDPS 2008: 1-12
73EEDavid A. Bader, Kamesh Madduri: SNAP, Small-world Network Analysis and Partitioning: An open-source parallel graph framework for the exploration of large-scale networks. IPDPS 2008: 1-12
72EEDavid A. Bader, Viktor K. Prasanna: DOSA: design optimizer for scientific applications. IPDPS 2008: 1-5
71EEDavid A. Bader: Engineering Algorithms for Computational Biology. Encyclopedia of Algorithms 2008
70EEDavid A. Bader: High Performance Algorithm Engineering for Large-scale Problems. Encyclopedia of Algorithms 2008
69EEDavid A. Bader: Sorting Signed Permutations by Reversal (Reversal Distance). Encyclopedia of Algorithms 2008
68EEDavid A. Bader, Srinivas Aluru: High-performance computational biology. Parallel Computing 34(11): 613-615 (2008)
67EEDavid A. Bader, Kamesh Madduri: A graph-theoretic analysis of the human protein-interaction network using multicore parallel algorithms. Parallel Computing 34(11): 627-639 (2008)
2007
66EEKamesh Madduri, David A. Bader, Jonathan W. Berry, Joseph R. Crobak: An Experimental Study of A Parallel Shortest Path Algorithm for Solving Large-Scale Graph Instances. ALENEX 2007
65EEDavid A. Bader, Virat Agarwal: FFTC: Fastest Fourier Transform for the IBM Cell Broadband Engine. HiPC 2007: 172-184
64EEDavid A. Bader: Petascale Computing for Large-Scale Graph Problems. IPDPS 2007: 1
63EEDavid A. Bader, Virat Agarwal, Kamesh Madduri: On the Design and Analysis of Irregular Algorithms on the Cell Processor: A Case Study of List Ranking. IPDPS 2007: 1-10
62EEDavid A. Bader, Viktor K. Prasanna: DOSA: Design Optimizer for Scientific Applications. IPDPS 2007: 1-6
61EEDavid A. Bader, Kamesh Madduri: A Graph-Theoretic Analysis of the Human Protein-Interaction Network Using Multicore Parallel Algorithms. IPDPS 2007: 1-8
60EEJoseph R. Crobak, Jonathan W. Berry, Kamesh Madduri, David A. Bader: Advanced Shortest Paths Algorithms on a Massively-Multithreaded Architecture. IPDPS 2007: 1-8
59EEDavid A. Bader, Varun Kanade, Kamesh Madduri: SWARM: A Parallel Programming Framework for Multicore Processors. IPDPS 2007: 1-8
58EESrinivas Aluru, David A. Bader, Anantharaman Kalyanaraman: Symposium Evening Tutorial: High-performance Computing Methods for Computational Genomics. IPDPS 2007: 13
57EEGuojing Cong, David A. Bader: Techniques for Designing Efficient Parallel Graph Algorithms for SMPs and Multicore Processors. ISPA 2007: 137-147
56EEDavid A. Bader: Petascale Computing for Large-Scale Graph Problems. PPAM 2007: 166-169
55EEDavid A. Bader, Shiva Kintali, Kamesh Madduri, Milena Mihail: Approximating Betweenness Centrality. WAW 2007: 124-137
54EESagar Dhakal, Majeed M. Hayat, Jorge E. Pezoa, Cundong Yang, David A. Bader: Dynamic Load Balancing in Distributed Systems in the Presence of Delays: A Regeneration-Theory Approach. IEEE Trans. Parallel Distrib. Syst. 18(4): 485-497 (2007)
53EEDiana H. P. Low, Bharadwaj Veeravalli, David A. Bader: On the design of high-performance algorithms for aligning multiple protein sequences on mesh-based multiprocessor architectures. J. Parallel Distrib. Comput. 67(9): 1007-1017 (2007)
52EEDavid A. Bader, Virat Agarwal, Kamesh Madduri, Seunghwa Kang: High performance combinatorial algorithm design on the Cell Broadband Engine processor. Parallel Computing 33(10-11): 720-740 (2007)
2006
51EEDavid A. Bader, Kamesh Madduri: Designing Multithreaded Algorithms for Breadth-First Search and st-connectivity on the Cray MTA-2. ICPP 2006: 523-530
50EEDavid A. Bader, Kamesh Madduri: Parallel Algorithms for Evaluating Centrality Indices in Real-world Networks. ICPP 2006: 539-550
49EEDavid A. Bader, Vaddadi P. Chandu, Mi Yan: ExactMP: An Efficient Parallel Exact Solver for Phylogenetic Tree Reconstruction Using Maximum Parsimony. ICPP 2006: 65-73
48EEMatthew J. Sottile, Vaddadi P. Chandu, David A. Bader: Performance analysis of parallel programs via message-passing graph traversal. IPDPS 2006
47EESrinivas Aluru, David A. Bader, Anantharaman Kalyanaraman: M11 - High-performance computing methods for computational genomics. SC 2006: 225
46 David A. Bader, Usman Roshan, Alexandros Stamatakis: Computational Grand Challenges in Assembling the Tree of Life: Problems and Solutions. Advances in Computers 68: 128-179 (2006)
45EESrinivas Aluru, Nancy M. Amato, David A. Bader: Editorial: Special Section on High-Performance Computational Biology. IEEE Trans. Parallel Distrib. Syst. 17(8): 737-739 (2006)
44EEDavid A. Bader, Guojing Cong: Fast shared-memory algorithms for computing the minimum spanning forest of sparse graphs. J. Parallel Distrib. Comput. 66(11): 1366-1378 (2006)
43EEGuojing Cong, David A. Bader: Designing irregular parallel algorithms with mutual exclusion and lock-free protocols. J. Parallel Distrib. Comput. 66(6): 854-866 (2006)
2005
42 David A. Bader, Manish Parashar, Sridhar Varadarajan, Viktor K. Prasanna: High Performance Computing - HiPC 2005, 12th International Conference, Goa, India, December 18-21, 2005, Proceedings Springer 2005
41EEDavid A. Bader, Vipin Sachdeva: Incorporating life sciences applications in the architectural optimizations of next-generation petaflop-system. CSB Workshops 2005: 83-84
40EEDavid A. Bader, Kamesh Madduri: Design and Implementation of the HPCS Graph Analysis Benchmark on Symmetric Multiprocessors. HiPC 2005: 465-476
39EEDavid A. Bader, Guojing Cong, John Feo: On the Architectural Requirements for Efficient Execution of Graph Algorithms. ICPP 2005: 547-556
38EEGuojing Cong, David A. Bader: An Experimental Study of Parallel Biconnected Components Algorithms on Symmetric Multiprocessors (SMPs). IPDPS 2005
37 Guojing Cong, David A. Bader: An Empirical Analysis of Parallel Random Permutation Algorithms ON SMPs. ISCA PDCS 2005: 27-34
36 David A. Bader, Vipin Sachdeva: A Cache-Aware Parallel Implementation of the Push-Relabel Network Flow Algorithm and Experimental Evaluation of the Gap Relabeling Heuristic. ISCA PDCS 2005: 41-48
35EEDavid A. Bader: High-Performance Algorithm Engineering for Large-Scale Graph Problems and Computational Biology. WEA 2005: 16-21
34EEDavid A. Bader, Guojing Cong: A fast, parallel spanning tree algorithm for symmetric multiprocessors (SMPs). J. Parallel Distrib. Comput. 65(9): 994-1006 (2005)
2004
33 David A. Bader, Ashfaq A. Khokhar: Proceedings of the ISCA 17th International Conference on Parallel and Distributed Computing Systems, September 15-17, 2004, The Canterbury Hotel, San Francisco, California, USA ISCA 2004
32EEMohammed Javeed Zaki, David A. Bader, Johan Montagnat, Concettina Guerra: Topic 17: High Performance Bioinformatics. Euro-Par 2004: 988
31EEDavid A. Bader, Kamesh Madduri: A Parallel State Assignment Algorithm for Finite State Machines. HiPC 2004: 297-308
30EEGuojing Cong, David A. Bader: Lock-Free Parallel Algorithms: An Experimental Study. HiPC 2004: 516-528
29EEMehmet F. Su, Ihab El-Kady, David A. Bader, Shawn-Yu Lin: A Novel FDTD Application Featuring OpenMP-MPI Hybrid Parallelization. ICPP 2004: 373-379
28EEGuojing Cong, David A. Bader: The Euler Tour Technique and Parallel Rooted Spanning Tree. ICPP 2004: 448-457
27EEDavid A. Bader, Guojing Cong: A Fast, Parallel Spanning Tree Algorithm for Symmetric Multiprocessors. IPDPS 2004
26EEDavid A. Bader, Guojing Cong: Fast Shared-Memory Algorithms for Computing the Minimum Spanning Forest of Sparse Graphs. IPDPS 2004
25EEDavid A. Bader: Computational biology and high-performance computing. Commun. ACM 47(11): 34-41 (2004)
24EEDavid A. Bader, Srinivas Aluru: Special Issue: High Performance Computational Biology. Concurrency - Practice and Experience 16(9): 817-821 (2004)
23EEDavid A. Bader: An improved, randomized algorithm for parallel selection with an experimental study. J. Parallel Distrib. Comput. 64(9): 1051-1059 (2004)
2003
22EESrinivas Aluru, David A. Bader: Guest Editor's Introduction: Special issue on high-performance computational biology. J. Parallel Distrib. Comput. 63(7-8): 671-673 (2003)
2002
21EEDavid A. Bader, Sukanya Sreshta, Nina R. Weisse-Bernstein: Evaluating Arithmetic Expressions Using Tree Contraction: A Fast and Scalable Parallel Implementation for Symmetric Multiprocessors (SMPs) (Extended Abstract). HiPC 2002: 63-78
20EEDavid A. Bader, Srinivas Aluru: Workshop Introduction. IPDPS 2002
19 Bernard M. E. Moret, David A. Bader, Tandy Warnow: High-Performance Algorithm Engineering for Computational Phylogenetics. The Journal of Supercomputing 22(1): 99-111 (2002)
2001
18EEDavid A. Bader, Ajith K. Illendula, Bernard M. E. Moret, Nina R. Weisse-Bernstein: Using PRAM Algorithms on a Uniform-Memory-Access Shared-Memory Architecture. Algorithm Engineering 2001: 129-144
17EEBernard M. E. Moret, David A. Bader, Tandy Warnow: High-Performance Algorithm Engineering for Computational Phylogenetics. International Conference on Computational Science (2) 2001: 1012-1021
16EEBernard M. E. Moret, Stacia K. Wyman, David A. Bader, Tandy Warnow, Mi Yan: A New Implmentation and Detailed Study of Breakpoint Analysis. Pacific Symposium on Biocomputing 2001: 583-594
15EEDavid A. Bader, Bernard M. E. Moret, Mi Yan: A Linear-Time Algorithm for Computing Inversion Distance between Signed Permutations with an Experimental Study. WADS 2001: 365-376
14 David A. Bader, Bernard M. E. Moret, Mi Yan: A Linear-Time Algorithm for Computing Inversion Distance between Signed Permutations with an Experimental Study. Journal of Computational Biology 8(5): 483-491 (2001)
2000
13EERob Pennington, David A. Bader, Barney Maccabe, Patricia A. Kovatch, Stephen L. Scott: Tutorial A: Design and Analysis of High Performance Clusters. CLUSTER 2000: 1-2
12EEDavid A. Bader, Bernard M. E. Moret, Peter Sanders: Algorithm Engineering for Parallel Computation. Experimental Algorithmics 2000: 1-23
1999
11EEDavid A. Bader, Arthur B. Maccabe, Jason R. Mastaler, John K. McIver III, Patricia A. Kovatch: Design and Analysis of the Alliance/University of New Mexico Roadrunner Linux SMP SuperCluster. IWCC 1999: 9-18
10 David A. Bader, Joseph JáJá: SIMPLE: A Methodology for Programming High Performance Algorithms on Clusters of Symmetric Multiprocessors (SMPs). J. Parallel Distrib. Comput. 58(1): 92-108 (1999)
1998
9EEDavid R. Helman, Joseph JáJá, David A. Bader: A New Deterministic Parallel Sorting Algorithm with an Experimental Evaluation. ACM Journal of Experimental Algorithmics 3: 4 (1998)
8 David R. Helman, David A. Bader, Joseph JáJá: A Randomized Parallel Sorting Algorithm with an Experimental Study. J. Parallel Distrib. Comput. 52(1): 1-23 (1998)
1996
7EEDavid A. Bader, Joseph JáJá: Practical Parallel Algorithms for Dynamic Data Redistribution, Median Finding, and Selection. IPPS 1996: 292-301
6EEDavid A. Bader, Joseph JáJá, David Harwood, Larry S. Davis: Parallel Algorithms for Image Enhancement and Segmentation by Region Growing with an Experimental Study. IPPS 1996: 414-423
5 David R. Helman, David A. Bader, Joseph JáJá: Parallel Algorithms for Personalized Communication and Sorting with an Experimental Study (Extended Abstract). SPAA 1996: 211-222
4EEDavid A. Bader, David R. Helman, Joseph JáJá: Practical Parallel Algorithms for Personalized Communication and Integer Sorting. ACM Journal of Experimental Algorithmics 1: 3 (1996)
3 David A. Bader, Joseph JáJá: Parallel Algorithms for Image Histogramming and Connected Components with an Experimental Study. J. Parallel Distrib. Comput. 35(2): 173-190 (1996)
1995
2 David A. Bader, Joseph JáJá: Parallel Algorithms for Image Histogramming and Connected Components with an Experimental Study (Extended Abstract). PPOPP 1995: 123-133
1EEDavid A. Bader, Joseph JáJá, Rama Chellappa: Scalable data parallel algorithms for texture synthesis using Gibbs random fields. IEEE Transactions on Image Processing 4(10): 1456-1460 (1995)

Coauthor Index

1Virat Agarwal [52] [63] [65] [74] [77] [79] [80]
2Srinivas Aluru [20] [22] [24] [45] [47] [58] [68]
3Nancy M. Amato [45]
4Jonathan W. Berry [60] [66]
5Aparna Chandramowlishwaran [77]
6Vaddadi P. Chandu [48] [49]
7Daniel G. Chavarría-Miranda [83]
8Rama Chellappa [1]
9Guojing Cong [26] [27] [28] [30] [34] [37] [38] [39] [43] [44] [57]
10Joseph R. Crobak [60] [66]
11Lin Dan [80]
12Larry S. Davis [6]
13Sagar Dhakal [54]
14David Ediger [83]
15Ihab El-Kady [29]
16John Feo [39]
17Concettina Guerra [32]
18Stephen C. Harvey [81]
19David Harwood [6]
20Majeed M. Hayat [54]
21Christine E. Heitsch [81]
22David R. Helman [4] [5] [8] [9]
23Ajith K. Illendula [18]
24Joseph JáJá [1] [2] [3] [4] [5] [6] [7] [8] [9] [10]
25Karl Jiang [83]
26Anantharaman Kalyanaraman (Ananth Kalyanaraman) [47] [58]
27Varun Kanade [59]
28Seunghwa Kang [52] [76] [79] [82] [84]
29Ashfaq A. Khokhar [33]
30Shiva Kintali (Shiva Prasad Kintali) [55]
31Patricia A. Kovatch [11] [13]
32Shawn-Yu Lin [29]
33Lurng-Kuo Liu [74] [80]
34Diana H. P. Low [53]
35Arthur B. Maccabe [11]
36Barney Maccabe [13]
37Kamesh Madduri [31] [40] [50] [51] [52] [55] [59] [60] [61] [63] [66] [67] [73] [83] [85]
38Jason R. Mastaler [11]
39Amrita Mathuriya [81]
40John K. McIver III [11]
41Milena Mihail [55]
42Johan Montagnat [32]
43Bernard M. E. Moret [12] [14] [15] [16] [17] [18] [19]
44Manish Parashar [42]
45Davide Pasetto [80]
46Sulabh Patel [75]
47Rob Pennington [13]
48Michael Perrone [80]
49Fabrizio Petrini [80]
50Jorge E. Pezoa [54]
51Viktor K. Prasanna (V. K. Prasanna Kumar) [42] [62] [72]
52Rick Quax [86]
53Usman Roshan [46]
54Vipin Sachdeva [36] [41]
55Peter Sanders [12]
56Stephen L. Scott [13]
57Peter M. A. Sloot [86]
58Matthew J. Sottile [48]
59Sukanya Sreshta [21]
60Alexandros Stamatakis [46]
61Mehmet F. Su [29]
62Sridhar Varadarajan [42]
63Bharadwaj Veeravalli [53]
64Richard W. Vuduc (Rich Vuduc) [84]
65Tandy Warnow [16] [17] [19]
66Nina R. Weisse-Bernstein [18] [21]
67Stacia K. Wyman [16]
68Mi Yan [14] [15] [16] [49]
69Cundong Yang [54]
70Mohammed Javeed Zaki (Mohammed J. Zaki) [32]

Colors in the list of coauthors

Copyright © Tue Nov 3 08:52:44 2009 by Michael Ley (ley@uni-trier.de)