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Rolf Backofen Vis

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*2009
79EERolf Backofen, Gad M. Landau, Mathias Möhl, Dekel Tsur, Oren Weimann: Fast RNA Structure Alignment for Crossing Input Structures. CPM 2009: 236-248
78EERolf Backofen, Dekel Tsur, Shay Zakov, Michal Ziv-Ukelson: Sparse RNA Folding: Time and Space Efficient Algorithms. CPM 2009: 249-262
77EEMathias Möhl, Sebastian Will, Rolf Backofen: Lifting Prediction to Alignment of RNA Pseudoknots. RECOMB 2009: 285-301
76EEJérôme Waldispühl, Charles W. O'Donnell, Sebastian Will, Srinivas Devadas, Rolf Backofen, Bonnie Berger: Simultaneous Alignment and Folding of Protein Sequences. RECOMB 2009: 339-355
75EEHamidreza Chitsaz, Rolf Backofen, Süleyman Cenk Sahinalp: biRNA: Fast RNA-RNA Binding Sites Prediction. WABI 2009: 25-36
74EERaheleh Salari, Rolf Backofen, Süleyman Cenk Sahinalp: Fast Prediction of RNA-RNA Interaction. WABI 2009: 261-272
73EEHamidreza Chitsaz, Raheleh Salari, Süleyman Cenk Sahinalp, Rolf Backofen: A partition function algorithm for interacting nucleic acid strands. Bioinformatics 25(12): (2009)
72EESteffen Heyne, Sebastian Will, Michael Beckstette, Rolf Backofen: Lightweight comparison of RNAs based on exact sequence-structure matches. Bioinformatics 25(16): 2095-2102 (2009)
71EEMartin Mann, Cameron Smith, Mohamad Rabbath, Marlien Edwards, Sebastian Will, Rolf Backofen: CPSP-web-tools: a server for 3D lattice protein studies. Bioinformatics 25(5): 676-677 (2009)
70EEMartin Mann, Rolf Backofen, Sebastian Will: Equivalence Classes of Optimal Structures in HP Protein Models Including Side Chains CoRR abs/0910.3848: (2009)
69EEMartin Mann, Mohamed Abou Hamra, Kathleen Steinhöfel, Rolf Backofen: Constraint-based Local Move Definitions for Lattice Protein Models Including Side Chains CoRR abs/0910.3880: (2009)
68EERainer Pudimat, Rolf Backofen, Ernst Günter Schukat-Talamazzini: Fast Feature Subset Selection in Biological Sequence Analysis. IJPRAI 23(2): 191-207 (2009)
2008
67EEMathias Möhl, Sebastian Will, Rolf Backofen: Fixed Parameter Tractable Alignment of RNA Structures Including Arbitrary Pseudoknots. CPM 2008: 69-81
66 Wolfgang Otto, Sebastian Will, Rolf Backofen: Structural Local Multiple Alignment of RNA. German Conference on Bioinformatics 2008: 178-177
65 Steffen Heyne, Sebastian Will, Michael Beckstette, Rolf Backofen: Lightweight Comparison of RNAs based on Exact Sequence-structure Matches. German Conference on Bioinformatics 2008: 189-
64EEMartin Mann, Sebastian Will, Rolf Backofen: CPSP-tools - Exact and complete algorithms for high-throughput 3D lattice protein studies. BMC Bioinformatics 9: (2008)
63EERileen Sinha, Michael Hiller, Rainer Pudimat, Ulrike Gausmann, Matthias Platzer, Rolf Backofen: Improved identification of conserved cassette exons using Bayesian networks. BMC Bioinformatics 9: (2008)
62EEAnke Busch, Andreas S. Richter, Rolf Backofen: IntaRNA: efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regions. Bioinformatics 24(24): 2849-2856 (2008)
61EEStéphane Zampelli, Martin Mann, Yves Deville, Rolf Backofen: Decomposition Techniques for Subgraph Matching CoRR abs/0805.1030: (2008)
60EESebastian Will, Anke Busch, Rolf Backofen: Efficient Sequence Alignment with Side-Constraints by Cluster Tree Elimination. Constraints 13(1-2): 110-129 (2008)
2007
59EERolf Backofen, Sven Siebert: Fast detection of common sequence structure patterns in RNAs. J. Discrete Algorithms 5(2): 212-228 (2007)
58EESven Siebert, Rolf Backofen: A Dynamic Programming Approach for Finding Common Patterns in RNAs. Journal of Computational Biology 14(1): 33-44 (2007)
57EERolf Backofen, Shihyen Chen, Danny Hermelin, Gad M. Landau, Mikhail A. Roytberg, Oren Weimann, Kaizhong Zhang: Locality and Gaps in RNA Comparison. Journal of Computational Biology 14(8): 1074-1087 (2007)
56EEMichael Hiller, Swetlana Nikolajewa, Klaus Huse, Karol Szafranski, Philip Rosenstiel, Stefan Schuster, Rolf Backofen, Matthias Platzer: TassDB: a database of alternative tandem splice sites. Nucleic Acids Research 35(Database-Issue): 188-192 (2007)
55EEAnke Busch, Rolf Backofen: INFO-RNA - a server for fast inverse RNA folding satisfying sequence constraints. Nucleic Acids Research 35(Web-Server-Issue): 310-313 (2007)
54EESwetlana Nikolajewa, Rainer Pudimat, Michael Hiller, Matthias Platzer, Rolf Backofen: BioBayesNet: a web server for feature extraction and Bayesian network modeling of biological sequence data. Nucleic Acids Research 35(Web-Server-Issue): 688-693 (2007)
2006
53EERolf Backofen, Danny Hermelin, Gad M. Landau, Oren Weimann: Local Alignment of RNA Sequences with Arbitrary Scoring Schemes. CPM 2006: 246-257
52EEAnke Busch, Rolf Backofen: INFO-RNA - a fast approach to inverse RNA folding. Bioinformatics 22(15): 1823-1831 (2006)
51EERolf Backofen, Sebastian Will: A Constraint-Based Approach to Fast and Exact Structure Prediction in Three-Dimensional Protein Models. Constraints 11(1): 5-30 (2006)
2005
50 Sven Siebert, Rolf Backofen: A New Distance Measure of RNA Ensembles and Its Application to Phylogenetic Tree Construction. CIBCB 2005: 150-157
49EERolf Backofen, Danny Hermelin, Gad M. Landau, Oren Weimann: Normalized Similarity of RNA Sequences. SPIRE 2005: 360-369
48EERainer Pudimat, Ernst Günter Schukat-Talamazzini, Rolf Backofen: A multiple-feature framework for modelling and predicting transcription factor binding sites. Bioinformatics 21(14): 3082-3088 (2005)
47EEAnke Busch, Sebastian Will, Rolf Backofen: SECISDesign: a server to design SECIS-elements within the coding sequence. Bioinformatics 21(15): 3312-3313 (2005)
46EESven Siebert, Rolf Backofen: MARNA: multiple alignment and consensus structure prediction of RNAs based on sequence structure comparisons. Bioinformatics 21(16): 3352-3359 (2005)
2004
45EERolf Backofen, Anke Busch: Computational Design of New and Recombinant Selenoproteins. CPM 2004: 270-284
44 Rainer Pudimat, Ernst Günter Schukat-Talamazzini, Rolf Backofen: Feature Based Representation and Detection of Transcription Factor Binding Sites. German Conference on Bioinformatics 2004: 43-52
43EERolf Backofen, Sven Siebert: Fast Detection of Common Sequence Structure Patterns in RNAs. SPIRE 2004: 79-92
42EEMichael Hiller, Rolf Backofen, Stephan Heymann, Anke Busch, Timo Mika Gläßer, Johann Christoph Freytag: Efficient prediction of alternative splice forms using protein domain homology. In Silico Biology 4: (2004)
41EERolf Backofen, Sebastian Will: Local Sequence-structure Motifs in Rna. J. Bioinformatics and Computational Biology 2(4): 681-698 (2004)
40EERolf Backofen: A polynomial time upper bound for the number of contacts in the HP-model on the face-centered-cubic lattice (FCC). J. Discrete Algorithms 2(2): 161-206 (2004)
2003
39 Sven Siebert, Rolf Backofen: MARNA: A server for multiple alignment of RNAs. German Conference on Bioinformatics 2003: 135-140
38EERolf Backofen, Sebastian Will: A Constraint-Based Approach to Structure Prediction for Simplified Protein Models That Outperforms Other Existing Methods. ICLP 2003: 49-71
2002
37EERolf Backofen, N. S. Narayanaswamy, Firas Swidan: On the Complexity of Protein Similarity Search under mRNA Structure Constraints. STACS 2002: 274-286
36 Rolf Backofen, Sebastian Will: Excluding Symmetries in Constraint-Based Search. Constraints 7(3-4): 333-349 (2002)
35EERolf Backofen, N. S. Narayanaswamy, Firas Swidan: Protein similarity search under mRNA structural constraints: application to selenocysteine incorporation. In Silico Biology 2: 26 (2002)
2001
34 Rolf Backofen: Introduction to Bioinformatics. ACL (Companion Volume) 2001: 4
33EERolf Backofen, Sebastian Will: Fast, Constraint-Based Threading of HP-Sequences to Hydrophobic Cores. CP 2001: 494-508
32EERolf Backofen, Sebastian Will: Optimally Compact Finite Sphere Packings - Hydrophobic Cores in the FCC. CPM 2001: 257-272
31 Rolf Backofen, N. S. Narayanaswamy, Firas Swidan: Protein similarity search under mRNA structural constraints: application to selenocysteine incorporation. German Conference on Bioinformatics 2001: 135-140
30EERolf Backofen: RNA-Sequence-Structure Properties and Selenocysteine Insertion. IDA 2001: 187-197
29 David Gilbert, Rolf Backofen, Roland H. C. Yap: Introduction to the Special Issue on Bioinformatics. Constraints 6(2/3): 139 (2001)
28 Rolf Backofen, David Gilbert: Bioinformatics and Constraints. Constraints 6(2/3): 141-156 (2001)
27 Rolf Backofen: The Protein Structure Prediction Problem: A Constraint Optimization Approach using a New Lower Bound. Constraints 6(2/3): 223-255 (2001)
2000
26EERolf Backofen: An Upper Bound for Number of Contacts in the HP-Model on the Face-Centered-Cubic Lattice (FCC). CPM 2000: 277-292
1999
25 Rolf Backofen, Sebastian Will: Excluding Symmetries in Constraint-Based Search. CP 1999: 73-87
24 Rolf Backofen, Sebastian Will, Peter Clote: Algorithmic approach to quantifying the hydrophobic force contribution in protein folding. German Conference on Bioinformatics 1999: 93-106
23 Rolf Backofen, Sebastian Will, Erich Bornberg-Bauer: Application of constraint programming techniques for structure prediction of lattice proteins with extended alphabets. Bioinformatics 15(3): 234-242 (1999)
22EERolf Backofen, François Bry, Peter Clote, Hans-Peter Kriegel, Thomas Seidl, Klaus U. Schulz: Bioinformatik - Aktuelles Schlagwort. Informatik Spektrum 22(5): 376-378 (1999)
1998
21EERolf Backofen: Constraint Techniques for Solving the Protein Structure Prediction Problem. CP 1998: 72-86
20 Rolf Backofen, Sebastian Will: Structure prediction in an HP-type lattice with an extended alphabet. German Conference on Bioinformatics 1998
19 Rolf Backofen, Ralf Treinen: How to Win a Game with Features. Inf. Comput. 142(1): 76-101 (1998)
1997
18EEGünter Neumann, Rolf Backofen, Judith Baur, Markus Becker, Christian Braun: An Information Extraction Core System for Real World German Text Processing. ANLP 1997: 209-216
17EERolf Backofen, Peter Clote: Evolution as a Computational Engine. CSL 1997: 35-55
16 Rolf Backofen: Using constraint programming for lattice protein folding. German Conference on Bioinformatics 1997: 123
15EEGünter Neumann, Rolf Backofen, Judith Baur, Markus Becker, Christian Braun: An Information Extraction Core System for Real World German Text Processing CoRR cmp-lg/9706023: (1997)
1996
14 Rolf Backofen: Controlling Functional Uncertainty. ECAI 1996: 557-561
13EERolf Backofen: Controlling Functional Uncertainty CoRR cmp-lg/9608002: (1996)
1995
12 Rolf Backofen: A Complete Axiomatization of a Theory with Feature and Arity Constraints. J. Log. Program. 24(1&2): 37-71 (1995)
11 Rolf Backofen, James Rogers, K. Vijay-Shanker: A First-Order Axiomatization of the Theory of Finite Trees. Journal of Logic, Language and Information 4(1): 5-39 (1995)
10EERolf Backofen, Gert Smolka: A Complete and Recursive Feature Theory. Theor. Comput. Sci. 146(1&2): 243-268 (1995)
1994
9 Rolf Backofen, Ralf Treinen: How to Win a Game with Features. CCL 1994: 320-335
8EEHans Uszkoreit, Rolf Backofen, Stephan Busemann, Abdel Kader Diagne, Elizabeth A. Hinkelman, Walter Kasper, Bernd Kiefer, Hans-Ulrich Krieger, Klaus Netter, Günter Neumann, Stephan Oepen, Stephen P. Spackman: DISCO-An HPSG-based NLP System and its Application for Appointment Scheduling Project Note. COLING 1994: 436-440
7 Rolf Backofen: Regular Path Expressions in Feature Logic. J. Symb. Comput. 17(5): 421-455 (1994)
1993
6 Rolf Backofen, Gert Smolka: A Complete and Recursive Feature Theory. ACL 1993: 193-200
5 Rolf Backofen: On the Decidability of Functional Uncertainty. ACL 1993: 201-208
4EERolf Backofen: Regular Path Expression in Feature Logic. RTA 1993: 121-135
1991
3 Rolf Backofen, Lutz Euler, Günther Görz: Distributed Disjunctions for LIFE. PDK 1991: 161-170
2 Rolf Backofen, Harald Trost, Hans Uszkoreit: Linking Typed Feature Formalisms and Terminological Knowledge Representation Languages in Natural Language Front-Ends. Wissensbasierte Systeme 1991: 375-383
1990
1 Rolf Backofen, Lutz Euler, Günther Görz: Towards the Integration of Functions, Relations and Types in an AI Programming Language. GWAI 1990: 297-306

Coauthor Index

1Judith Baur [15] [18]
2Markus Becker [15] [18]
3Michael Beckstette [65] [72]
4Bonnie Berger [76]
5Erich Bornberg-Bauer [23]
6Christian Braun [15] [18]
7François Bry (François Bry-Haußer) [22]
8Anke Busch [42] [45] [47] [52] [55] [60] [62]
9Stephan Busemann [8]
10Shihyen Chen [57]
11Hamidreza Chitsaz [73] [75]
12Peter Clote [17] [22] [24]
13Srinivas Devadas [76]
14Yves Deville [61]
15Abdel Kader Diagne [8]
16Marlien Edwards [71]
17Lutz Euler [1] [3]
18Johann Christoph Freytag [42]
19Ulrike Gausmann [63]
20David Gilbert (David R. Gilbert) [28] [29]
21Timo Mika Gläßer [42]
22Günther Görz [1] [3]
23Mohamed Abou Hamra [69]
24Danny Hermelin [49] [53] [57]
25Stephan Heymann [42]
26Steffen Heyne [65] [72]
27Michael Hiller [42] [54] [56] [63]
28Elizabeth A. Hinkelman [8]
29Klaus Huse [56]
30Walter Kasper [8]
31Bernd Kiefer [8]
32Hans-Peter Kriegel [22]
33Hans-Ulrich Krieger [8]
34Gad M. Landau [49] [53] [57] [79]
35Martin Mann [61] [64] [69] [70] [71]
36Mathias Möhl [67] [77] [79]
37N. S. Narayanaswamy [31] [35] [37]
38Klaus Netter [8]
39Günter Neumann [8] [15] [18]
40Swetlana Nikolajewa [54] [56]
41Charles W. O'Donnell [76]
42Stephan Oepen [8]
43Wolfgang Otto [66]
44Matthias Platzer [54] [56] [63]
45Rainer Pudimat [44] [48] [54] [63] [68]
46Mohamad Rabbath [71]
47Andreas S. Richter [62]
48James Rogers [11]
49Philip Rosenstiel [56]
50Mikhail A. Roytberg [57]
51Süleyman Cenk Sahinalp [73] [74] [75]
52Raheleh Salari [73] [74]
53Ernst Günter Schukat-Talamazzini [44] [48] [68]
54Klaus U. Schulz [22]
55Stefan Schuster [56]
56Thomas Seidl [22]
57Sven Siebert [39] [43] [46] [50] [58] [59]
58Rileen Sinha [63]
59Cameron Smith [71]
60Gert Smolka [6] [10]
61Stephen P. Spackman [8]
62Kathleen Steinhöfel [69]
63Firas Swidan [31] [35] [37]
64Karol Szafranski [56]
65Ralf Treinen [9] [19]
66Harald Trost [2]
67Dekel Tsur [78] [79]
68Hans Uszkoreit [2] [8]
69K. Vijay-Shanker [11]
70Jérôme Waldispühl [76]
71Oren Weimann [49] [53] [57] [79]
72Sebastian Will [20] [23] [24] [25] [32] [33] [36] [38] [41] [47] [51] [60] [64] [65] [66] [67] [70] [71] [72] [76] [77]
73Roland H. C. Yap [29]
74Shay Zakov [78]
75Stéphane Zampelli [61]
76Kaizhong Zhang [57]
77Michal Ziv-Ukelson [78]

Colors in the list of coauthors

Copyright © Tue Nov 3 08:52:44 2009 by Michael Ley (ley@uni-trier.de)