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Russ B. Altman Vis

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*2009
87EEYael Garten, Russ B. Altman: Pharmspresso: a text mining tool for extraction of pharmacogenomic concepts and relationships from full text. BMC Bioinformatics 10(S-2): (2009)
2008
86 Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany Murray, Teri E. Klein: Biocomputing 2008, Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, 4-8 January 2008 World Scientific 2008
85EERuss B. Altman: Text mining for pharmacogenomics. DTMBIO 2008: 1-2
84EEDariya S. Glazer, Randall J. Radmer, Russ B. Altman: Combining Molecular Dynamics and Machine Learning to Improve Protein Function Recognition. Pacific Symposium on Biocomputing 2008: 332-343
83EEBernie J. Daigle Jr., Russ B. Altman: M-BISON: Microarray-based integration of data sources using networks. BMC Bioinformatics 9: (2008)
82EEGraham L. Poulter, Daniel L. Rubin, Russ B. Altman, Cathal Seoighe: MScanner: a classifier for retrieving Medline citations. BMC Bioinformatics 9: (2008)
81EEPeggy Yao, Ankur Dhanik, Nathan Marz, Ryan Propper, Charles Kou, Guanfeng Liu, Henry van den Bedem, Jean-Claude Latombe, Inbal Halperin-Landsberg, Russ B. Altman: Efficient Algorithms to Explore Conformation Spaces of Flexible Protein Loops. IEEE/ACM Trans. Comput. Biology Bioinform. 5(4): 534-545 (2008)
80EETina Hernandez-Boussard, Michelle Whirl Carrillo, Joan M. Hebert, Li Gong, Ryan Owen, Mei Gong, Winston Gor, Feng Liu, Chuong Truong, Ryan Whaley, Mark Woon, Tina Zhou, Russ B. Altman, Teri E. Klein: The pharmacogenetics and pharmacogenomics knowledge base: accentuating the knowledge. Nucleic Acids Research 36(Database-Issue): 913-918 (2008)
2007
79 Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany Murray, Teri E. Klein: Biocomputing 2007, Proceedings of the Pacific Symposium, Maui, Hawaii, USA, 3-7 January 2007 World Scientific 2007
78EERuss B. Altman: Combining Simulation and Machine Learning to Recognize Function in 4D. BIBM 2007: 3
77EERong Xu, Yael Garten, Kaustubh S. Supekar, Amar K. Das, Russ B. Altman, Alan M. Garber: Extracting Subject Demographic Information From Abstracts of Randomized Clinical Trial Reports. MedInfo 2007: 550-554
76EESungroh Yoon, Jessica C. Ebert, Eui-Young Chung, Giovanni De Micheli, Russ B. Altman: Clustering protein environments for function prediction: finding PROSITE motifs in 3D. BMC Bioinformatics 8(S-4): (2007)
75EERuss B. Altman: Current progress in bioinformatics 2007. Briefings in Bioinformatics 8(5): 277-278 (2007)
74EERuss B. Altman, Teri E. Klein: Biomedical informatics training at Stanford in the 21st century. Journal of Biomedical Informatics 40(1): 55-58 (2007)
2006
73 Russ B. Altman, Tiffany Murray, Teri E. Klein, A. Keith Dunker, Lawrence Hunter: Biocomputing 2006, Proceedings of the Pacific Symposium, Maui, Hawaii, USA, 3-7 January 2006 World Scientific 2006
72EEScott L. Delp, F. Clayton Anderson, Russ B. Altman: Physics-based simulation of biological structures. ISBI 2006: 802-805
71EERuss B. Altman: Annual Progress in Bioinformatics 2006. Briefings in Bioinformatics 7(3): 209-210 (2006)
70EETu Minh Phuong, Zhen Lin, Russ B. Altman: Choosing Snps Using Feature Selection. J. Bioinformatics and Computational Biology 4(2): 241-258 (2006)
2005
69 Russ B. Altman, Tiffany A. Jung, Teri E. Klein, A. Keith Dunker, Lawrence Hunter: Biocomputing 2005, Proceedings of the Pacific Symposium, Hawaii, USA, 4-8 January 2005 World Scientific 2005
68EERuss B. Altman: Challenges in Creating an Infrastructure for Physics-Based Simulation of Biological Structures. CSB 2005: 3
67EETu Minh Phuong, Zhen Lin, Russ B. Altman: Choosing SNPs Using Feature Selection. CSB 2005: 301-309
66EERuss B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein: Preface. Pacific Symposium on Biocomputing 2005
65 Russ B. Altman: Editorial: Annual progress in bioinformatics. Briefings in Bioinformatics 6(1): 4-5 (2005)
64EEJonathan D. Wren, Jeffrey T. Chang, James Pustejovsky, Eytan Adar, Harold R. Garner, Russ B. Altman: Biomedical term mapping databases. Nucleic Acids Research 33(Database-Issue): 289-293 (2005)
2004
63 Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany A. Jung, Teri E. Klein: Biocomputing 2004, Proceedings of the Pacific Symposium, Hawaii, USA, 6-10 January 2004 World Scientific 2004
62EERuss B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein: Preface. Pacific Symposium on Biocomputing 2004
61EEDiane E. Oliver, Gaurav Bhalotia, Ariel S. Schwartz, Russ B. Altman, Marti A. Hearst: Tools for loading MEDLINE into a local relational database. BMC Bioinformatics 5: 146 (2004)
60EEJeffrey T. Chang, Hinrich Schütze, Russ B. Altman: GAPSCORE: finding gene and protein names one word at a time. Bioinformatics 20(2): 216-225 (2004)
59 Russ B. Altman: Editorial: Building successful biological databases. Briefings in Bioinformatics 5(1): 4 (2004)
2003
58EEShuo Liu, Steve Lin, Mark Woon, Teri E. Klein, Russ B. Altman: A Personalized and Automated dbSNP Surveillance System. CSB 2003: 132-136
57EEMike P. Liang, Douglas L. Brutlag, Russ B. Altman: Automatic Construction of 3D Structural Motifs for Protein Function Prediction. CSB 2003: 613-614
56EEMike P. Liang, Douglas L. Brutlag, Russ B. Altman: Automated Construction of Structural Motifs for Predicting Functional Sites on Protein Structures. Pacific Symposium on Biocomputing 2003: 204-215
55EERuss B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein: Preface. Pacific Symposium on Biocomputing 2003
54EERuss B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein: Special Paper - Introduction. Pacific Symposium on Biocomputing 2003: 636-637
53EEMiles Osborne, Mark Cuminskey, Gail Sinclair, Matthew Smillie, Bonnie L. Webber, Jeffrey T. Chang, Nipun Mehra, Veronica Rotemberg, Russ B. Altman: Edinburgh-Stanford TREC-2003 Genomics Track. TREC 2003: 622-630
52 Sean D. Mooney, Russ B. Altman: MutDB: annotating human variation with functionally relevant data. Bioinformatics 19(14): 1858-1860 (2003)
51 Iwei Yeh, Peter D. Karp, Natalya Fridman Noy, Russ B. Altman: Knowledge acquisition, consistency checking and concurrency control for Gene Ontology (GO). Bioinformatics 19(2): 241-248 (2003)
50 Soumya Raychaudhuri, Russ B. Altman: A literature-based method for assessing the functional coherence of a gene group. Bioinformatics 19(3): 396-401 (2003)
49EELiping Wei, Russ B. Altman: Recognizing Complex, Asymmetric Functional Sites in Protein Structures Using a Bayesian Scoring Function. J. Bioinformatics and Computational Biology 1(1): 119-138 (2003)
48EESoumya Raychaudhuri, Hinrich Schütze, Russ B. Altman: Inclusion of Textual Documentation in the Analysis of Multidimensional Data Sets: Application to Gene Expression Data. Machine Learning 52(1-2): 119-145 (2003)
47 Mike P. Liang, D. Rey Banatao, Teri E. Klein, Douglas L. Brutlag, Russ B. Altman: WebFEATURE: an interactive web tool for identifying and visualizing functional sites on macromolecular structures. Nucleic Acids Research 31(13): 3324-3327 (2003)
46EERuss B. Altman: Complexities of Managing Biomedical Information. OMICS 7(1): 127-130 (2003)
2002
45 Daniel L. Rubin, Farhad Shafa, Diane E. Oliver, Micheal Hewett, Russ B. Altman: Representing genetic sequence data for pharmacogenomics: an evolutionary approach using ontological and relational models. ISMB 2002: 207-215
44EEDiane E. Oliver, Daniel L. Rubin, Joshua M. Stuart, Micheal Hewett, Teri E. Klein, Russ B. Altman: Ontology Development for a Pharmacogenetics Knowledge Base. Pacific Symposium on Biocomputing 2002: 65-76
43EEDaniel L. Rubin, Micheal Hewett, Diane E. Oliver, Teri E. Klein, Russ B. Altman: Automating Data Acquisition into Ontologies from Pharmacogenetics Relational Data Sources Using Declarative Object Definitions and XML. Pacific Symposium on Biocomputing 2002: 88-99
42EERuss B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein: Preface. Pacific Symposium on Biocomputing 2002
41 Olga G. Troyanskaya, Mitchell E. Garber, Patrick O. Brown, David Botstein, Russ B. Altman: Nonparametric methods for identifying differentially expressed genes in microarray data. Bioinformatics 18(11): 1454-1461 (2002)
40 Mor Peleg, Iwei Yeh, Russ B. Altman: Modelling biological processes using workflow and Petri Net models. Bioinformatics 18(6): 825-837 (2002)
39EEJiawei Han, Russ B. Altman, Vipin Kumar, Heikki Mannila, Daryl Pregibon: Emerging scientific applications in data mining. Commun. ACM 45(8): 54-58 (2002)
38 Micheal Hewett, Diane E. Oliver, Daniel L. Rubin, Katrina L. Easton, Joshua M. Stuart, Russ B. Altman, Teri E. Klein: PharmGKB: the Pharmacogenetics Knowledge Base. Nucleic Acids Research 30(1): 163-165 (2002)
2001
37EERuss B. Altman: Challenges for knowledge discovery in biology. KDD 2001: 2
36EED. Rey Banatao, Conrad C. Huang, Patricia C. Babbitt, Russ B. Altman, Teri E. Klein: ViewFeature: Integrated Feature Analysis and Visualization. Pacific Symposium on Biocomputing 2001: 240-250
35EEAllison Waugh, Glenn A. Williams, Liping Wei, Russ B. Altman: Using Metacomputing Tools to Facilitate Large Scale Analyses of Biological Databases. Pacific Symposium on Biocomputing 2001: 360-371
34EEJeffrey T. Chang, Soumya Raychaudhuri, Russ B. Altman: Including Biological Literature Improves Homology Search. Pacific Symposium on Biocomputing 2001: 374-383
33 Olga G. Troyanskaya, Michael Cantor, Gavin Sherlock, Patrick O. Brown, Trevor Hastie, Robert Tibshirani, David Botstein, Russ B. Altman: Missing value estimation methods for DNA microarrays. Bioinformatics 17(6): 520-525 (2001)
32EERuss B. Altman, Alfonso Valencia, Satoru Miyano, Shoba Ranganathan: Challenges for Intelligent Systems in Biology. IEEE Intelligent Systems 16(6): 14-20 (2001)
31 Glenn A. Williams, Jonathan M. Dugan, Russ B. Altman: Constrained Global Optimization for Estimating Molecular Structure from Atomic Distances. Journal of Computational Biology 8(5): 523-548 (2001)
2000
30 Philip E. Bourne, Michael Gribskov, Russ B. Altman, Nancy Jensen, Debra A. Hope, Thomas Lengauer, Julie C. Mitchell, Eric D. Scheeff, Chris Smith, Shawn Strande, Helge Weissig: Proceedings of the Eighth International Conference on Intelligent Systems for Molecular Biology, August 19-23, 2000, La Jolla / San Diego, CA, USA AAAI 2000
29 Soumya Raychaudhuri, Joshua M. Stuart, Xuemin Liu, Peter M. Small, Russ B. Altman: Pattern Recognition of Genomic Features with Microarrays: Site Typing of Mycobacterium Tuberculosis Strains. ISMB 2000: 286-295
1999
28 Cheng Che Chen, Jaswinder Pal Singh, Russ B. Altman: Biomolecular Structure Estimation: A Case Study of Irregular Hierarchical Parallelism. PPSC 1999
27 Russ B. Altman: AI in Medicine: The Spectrum of Challenges from Managed Care to Molecular Medicine. AI Magazine 20(3): 67-77 (1999)
26 Cheng Che Chen, Jaswinder Pal Singh, Russ B. Altman: Using imperfect secondary structure predictions to improve molecular structure computations. Bioinformatics 15(1): 53-65 (1999)
25 Russ B. Altman, Michael Bada, Xiaoqian J. Chai, Michelle Whirl Carrillo, Richard O. Chen, Neil F. Abernethy: RiboWeb: An Ontology-Based System for Collaborative Molecular Biology. IEEE Intelligent Systems 14(5): 68-76 (1999)
1998
24 Jeanette P. Schmidt, Cheng Che Chen, Jonathan L. Cooper, Russ B. Altman: A Surface Measure for Probabilistic Structural Computations. ISMB 1998: 148-156
23EENeil F. Abernethy, Russ B. Altman: Sophia: Providing Basic Knowledge Services with a Common DBMS. KRDB 1998: 1.1-1.6
22EECheng Che Chen, Jaswinder Pal Singh, Russ B. Altman: The hierarchical organization of molecular structure computations. RECOMB 1998: 51-59
21 Russ B. Altman: A curriculum for bioinformatics: the time is ripe. Bioinformatics 14(7): 549-550 (1998)
20EEJohn H. Gennari, Heyning Cheng, Russ B. Altman, Mark A. Musen: Reuse, CORBA, and knowledge-based systems. Int. J. Hum.-Comput. Stud. 49(4): 523-546 (1998)
19 Cheng Che Chen, Jaswinder Pal Singh, Russ B. Altman: Hierarchical Organization of Molecular Structure Computations. Journal of Computational Biology 5(3): 409-422 (1998)
1997
18 Russ B. Altman, Neil F. Abernethy, Richard O. Chen: Standardized Representations of the Literature: Combining Diverse Sources of Ribosomal Data. ISMB 1997: 15-24
17 Richard O. Chen, Ramon M. Felciano, Russ B. Altman: RIBOWEB: Linking Structural Computations to a Knowledge Base of Published Experimental Data. ISMB 1997: 84-87
1996
16 Cheng Che Chen, Richard O. Chen, Russ B. Altman: Constraining volume by matching the moments of a distance distribution. Computer Applications in the Biosciences 12(4): 319-326 (1996)
1995
15 Christopher J. Rawlings, Dominic A. Clark, Russ B. Altman, Lawrence Hunter, Thomas Lengauer, Shoshana J. Wodak: Proceedings of the Third International Conference on Intelligent Systems for Molecular Biology, Cambridge, United Kingdom, July 16-19, 1995 AAAI 1995
14 Steven C. Bagley, Liping Wei, Carol Cheng, Russ B. Altman: Characterizing Oriented Protein Structural Sites Using Biochemical Properties. ISMB 1995: 12-20
13 John H. Gennari, Russ B. Altman, Mark A. Musen: Reuse with PROTÉgÉ-II: From Elevators to Ribosomes. SSR 1995: 72-80
12 Mark Gerstein, Russ B. Altman: Using a measure of structural variation to define a core for the globins. Computer Applications in the Biosciences 11(6): 633-644 (1995)
11EERuss B. Altman: A probabilistic approach to determining biological structure: integrating uncertain data sources. Int. J. Hum.-Comput. Stud. 42(6): 593-616 (1995)
1994
10 Russ B. Altman, Douglas L. Brutlag, Peter D. Karp, Richard H. Lathrop, David B. Searls: Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, August 14-17, 1994, Stanford University, Stanford, California, USA AAAI 1994
9 Russ B. Altman, Bryn Weiser, Harry F. Noller: Constraint Satisfaction Techniques for Modeling Large Complexes: Application to the Central Domain of 16S Ribosomal RNA. ISMB 1994: 10-18
8 Russ B. Altman, Mark Gerstein: Finding an Average Core Structure: Application to the Globins. ISMB 1994: 19-27
7EECheng Che Chen, Jaswinder Pal Singh, William B. Poland, Russ B. Altman: Parallel protein structure determination from uncertain data. SC 1994: 570-579
6EERuss B. Altman, Cheng Che Chen, William B. Poland, Jaswinder Pal Singh: Probabilistic Constraint Satisfaction with Non-Gaussian Noise. UAI 1994: 15-22
1993
5 Russ B. Altman: Probabilistic Structure Calculations: A Three-Dimensional tRNA Structure from Sequence Correlation Data. ISMB 1993: 12-20
4EERuss B. Altman: A Probabilistic Algorithm for Calculating Structure: Borrowing from Simulated Annealing. UAI 1993: 23-31
1988
3EEJames F. Brinkley, Russ B. Altman, Bruce S. Duncan, Bruce G. Buchanan, Oleg Jardetzky: Heuristic refinement method for the derivation of protein solution structures: validation on cytochrome b562. Journal of Chemical Information and Computer Sciences 28(4): 194-210 (1988)
1987
2 Russ B. Altman, Bruce G. Buchanan: Partial Compilation of Strategic Knowledge. AAAI 1987: 399-404
1986
1 Barbara Hayes-Roth, Bruce G. Buchanan, Olivier Lichtarge, Mike Hewitt, Russ B. Altman, James F. Brinkley, Craig Cornelius, Bruce S. Duncan, Oleg Jardetzky: PROTEAN: Deriving Protein Structure from Constraints. AAAI 1986: 904-909

Coauthor Index

1Neil F. Abernethy [18] [23] [25]
2Eytan Adar [64]
3F. Clayton Anderson [72]
4Patricia C. Babbitt [36]
5Michael Bada [25]
6Steven C. Bagley [14]
7D. Rey Banatao [36] [47]
8Henry van den Bedem [81]
9Gaurav Bhalotia [61]
10David Botstein [33] [41]
11Philip E. Bourne [30]
12James F. Brinkley [1] [3]
13Patrick O. Brown [33] [41]
14Douglas L. Brutlag [10] [47] [56] [57]
15Bruce G. Buchanan [1] [2] [3]
16Michael Cantor [33]
17Michelle Whirl Carrillo [25] [80]
18Xiaoqian J. Chai [25]
19Jeffrey T. Chang [34] [53] [60] [64]
20Cheng Che Chen [6] [7] [16] [19] [22] [24] [26] [28]
21Richard O. Chen [16] [17] [18] [25]
22Carol Cheng [14]
23Heyning Cheng [20]
24Eui-Young Chung [76]
25Dominic A. Clark [15]
26Jonathan L. Cooper [24]
27Craig Cornelius [1]
28Mark Cuminskey [53]
29Bernie J. Daigle Jr. [83]
30Amar K. Das [77]
31Scott L. Delp [72]
32Ankur Dhanik [81]
33Jonathan M. Dugan [31]
34Bruce S. Duncan [1] [3]
35A. Keith Dunker [42] [54] [55] [62] [63] [66] [69] [73] [79] [86]
36Katrina L. Easton [38]
37Jessica C. Ebert [76]
38Ramon M. Felciano [17]
39Alan M. Garber [77]
40Mitchell E. Garber [41]
41Harold R. Garner [64]
42Yael Garten [77] [87]
43John H. Gennari [13] [20]
44Mark Gerstein (Mark B. Gerstein) [8] [12]
45Dariya S. Glazer [84]
46Li Gong [80]
47Mei Gong [80]
48Winston Gor [80]
49Michael Gribskov [30]
50Inbal Halperin-Landsberg [81]
51Jiawei Han [39]
52Trevor Hastie [33]
53Barbara Hayes-Roth [1]
54Marti A. Hearst [61]
55Joan M. Hebert [80]
56Tina Hernandez-Boussard [80]
57Micheal Hewett [38] [43] [44] [45]
58Mike Hewitt [1]
59Debra A. Hope [30]
60Conrad C. Huang [36]
61Lawrence Hunter [15] [42] [54] [55] [62] [63] [66] [69] [73] [79] [86]
62Oleg Jardetzky [1] [3]
63Nancy Jensen [30]
64Peter D. Karp [10] [51]
65Teri E. Klein [36] [38] [42] [43] [44] [47] [54] [55] [58] [62] [63] [66] [69] [73] [74] [79] [80] [86]
66Charles Kou [81]
67Vipin Kumar [39]
68Richard H. Lathrop [10]
69Jean-Claude Latombe [81]
70Thomas Lengauer [15] [30]
71Mike P. Liang [47] [56] [57]
72Olivier Lichtarge [1]
73Steve Lin [58]
74Zhen Lin [67] [70]
75Feng Liu [80]
76Guanfeng Liu [81]
77Shuo Liu [58]
78Xuemin Liu [29]
79Heikki Mannila [39]
80Nathan Marz [81]
81Nipun Mehra [53]
82Giovanni De Micheli [76]
83Julie C. Mitchell [30]
84Satoru Miyano [32]
85Sean D. Mooney [52]
86Tiffany Murray (Tiffany A. Jung) [63] [69] [73] [79] [86]
87Mark A. Musen [13] [20]
88Harry F. Noller [9]
89Natalya Fridman Noy (Natasha Fridman Noy, Natasha F. Noy) [51]
90Diane E. Oliver [38] [43] [44] [45] [61]
91Miles Osborne [53]
92Ryan Owen [80]
93Mor Peleg [40]
94Tu Minh Phuong [67] [70]
95William B. Poland [6] [7]
96Graham L. Poulter [82]
97Daryl Pregibon [39]
98Ryan Propper [81]
99James Pustejovsky [64]
100Randall J. Radmer [84]
101Shoba Ranganathan [32]
102Christopher J. Rawlings [15]
103Soumya Raychaudhuri [29] [34] [48] [50]
104Veronica Rotemberg [53]
105Daniel L. Rubin [38] [43] [44] [45] [82]
106Eric D. Scheeff [30]
107Jeanette P. Schmidt [24]
108Hinrich Schütze [48] [60]
109Ariel S. Schwartz [61]
110David B. Searls [10]
111Cathal Seoighe [82]
112Farhad Shafa [45]
113Gavin Sherlock [33]
114Gail Sinclair [53]
115Jaswinder Pal Singh [6] [7] [19] [22] [26] [28]
116Peter M. Small [29]
117Matthew Smillie [53]
118Chris Smith [30]
119Shawn Strande [30]
120Joshua M. Stuart [29] [38] [44]
121Kaustubh S. Supekar [77]
122Robert Tibshirani [33]
123Olga G. Troyanskaya [33] [41]
124Chuong Truong [80]
125Alfonso Valencia [32]
126Allison Waugh [35]
127Bonnie L. Webber [53]
128Liping Wei [14] [35] [49]
129Bryn Weiser [9]
130Helge Weissig [30]
131Ryan Whaley [80]
132Glenn A. Williams [31] [35]
133Shoshana J. Wodak [15]
134Mark Woon [58] [80]
135Jonathan D. Wren [64]
136Rong Xu [77]
137Peggy Yao [81]
138Iwei Yeh [40] [51]
139Sungroh Yoon [76]
140Tina Zhou [80]

Colors in the list of coauthors

Copyright © Tue Nov 3 08:52:44 2009 by Michael Ley (ley@uni-trier.de)