Jonas S. Almeida Vis

*	2009
21	EE	Jonas S. Almeida, Susana Vinga: Biological sequences as pictures - a generic two dimensional solution for iterated maps. BMC Bioinformatics 10: (2009)
	2008
20	EE	Xiaoshu Wang, Jonas S. Almeida, Arlindo L. Oliveira: Ontology Design Principles and Normalization Techniques in the Web. DILS 2008: 28-43
19	EE	Romesh Stanislaus, John M. Arthur, Balaji Rajagopalan, Rick Moerschell, Brian McGlothlen, Jonas S. Almeida: An open-source representation for 2-DE-centric proteomics and support infrastructure for data storage and analysis. BMC Bioinformatics 9: (2008)
18	EE	Romesh Stanislaus, Mark Carey, Helena F. Deus, Kevin R. Coombes, Bryan T. J. Hennessy, Gordon B. Mills, Jonas S. Almeida: RPPAML/RIMS: A metadata format and an information management system for reverse phase protein arrays. BMC Bioinformatics 9: (2008)
	2007
17	EE	Marco Vilela, Carlos Cristiano H. Borges, Susana Vinga, Ana Tereza R. Vasconcelos, Helena Santos, Eberhard O. Voit, Jonas S. Almeida: Automated smoother for the numerical decoupling of dynamics models. BMC Bioinformatics 8: (2007)
16	EE	Susana Vinga, Jonas S. Almeida: Local Renyi entropic profiles of DNA sequences. BMC Bioinformatics 8: (2007)
15	EE	Francisco R. Pinto, João A. Carriço, Mário Ramirez, Jonas S. Almeida: Ranked Adjusted Rand: integrating distance and partition information in a measure of clustering agreement. BMC Bioinformatics 8: (2007)
14	EE	Yuliya V. Karpievitch, Elizabeth G. Hill, Adam J. Smolka, Jeffrey S. Morris, Kevin R. Coombes, Keith A. Baggerly, Jonas S. Almeida: PrepMS: TOF MS data graphical preprocessing tool. Bioinformatics 23(2): 264-265 (2007)
	2006
13	EE	Jonas S. Almeida, Susana Vinga: Computing distribution of scale independent motifs in biological sequences. Algorithms for Molecular Biology 1: (2006)
12	EE	Yian A. Chen, Cheng-Chung Chou, Xinghua Lu, Elizabeth H. Slate, Konan Peck, Wenying Xu, Eberhard O. Voit, Jonas S. Almeida: A multivariate prediction model for microarray cross-hybridization. BMC Bioinformatics 7: 101 (2006)
11	EE	Yuliya V. Karpievitch, Jonas S. Almeida: mGrid: A load-balanced distributed computing environment for the remote execution of the user-defined Matlab code. BMC Bioinformatics 7: 139 (2006)
	2005
10	EE	Francisco R. Pinto, L. Ashley Cowart, Yusuf A. Hannun, B. Rohrer, Jonas S. Almeida: Local correlation of expression profiles with gene annotations-proof of concept for a general conciliatory method. Bioinformatics 21(7): 1037-1045 (2005)
9	EE	Romesh Stanislaus, Chuming Chen, Jennifer Franklin, John M. Arthur, Jonas S. Almeida: AGML Central: web based gel proteomic infrastructure. Bioinformatics 21(9): 1754-1757 (2005)
	2004
8	EE	Yian A. Chen, David J. Mckillen, Shuyuan Wu, Matthew J. Jenny, Robert Chapman, Paul S. Gross, Gregory W. Warr, Jonas S. Almeida: Optimal cDNA microarray design using expressed sequence tags for organisms with limited genomic information. BMC Bioinformatics 5: 191 (2004)
7	EE	Romesh Stanislaus, Liu Hong Jiang, Martha Swartz, John M. Arthur, Jonas S. Almeida: An XML standard for the dissemination of annotated 2D gel electrophoresis data complemented with mass spectrometry results. BMC Bioinformatics 5: 9 (2004)
6	EE	Eberhard O. Voit, Jonas S. Almeida: Decoupling dynamical systems for pathway identification from metabolic profiles. Bioinformatics 20(11): 1670-1681 (2004)
5	EE	Susana Vinga, Rodrigo Gouveia-Oliveira, Jonas S. Almeida: Comparative evaluation of word composition distances for the recognition of SCOP relationships. Bioinformatics 20(2): 206-215 (2004)
	2003
4		Susana Vinga, Jonas S. Almeida: Alignment-free sequence comparison-a review. Bioinformatics 19(4): 513-523 (2003)
	2002
3	EE	John Schwacke, Jonas S. Almeida: Efficient Boolean implementation of universal sequence maps (bUSM). BMC Bioinformatics 3: 28 (2002)
2	EE	Jonas S. Almeida, Susana Vinga: Universal sequence map (USM) of arbitrary discrete sequences. BMC Bioinformatics 3: 6 (2002)
	2001
1		Jonas S. Almeida, João A. Carriço, António Maretzek, Peter A. Noble, Madilyn Fletcher: Analysis of genomic sequences by Chaos Game Representation. Bioinformatics 17(5): 429-437 (2001)

Coauthor Index

1	John M. Arthur	[7] [9] [19]
2	Keith A. Baggerly	[14]
3	Carlos Cristiano H. Borges	[17]
4	Mark Carey	[18]
5	João A. Carriço	[1] [15]
6	Robert Chapman	[8]
7	Chuming Chen	[9]
8	Yian A. Chen	[8] [12]
9	Cheng-Chung Chou	[12]
10	Kevin R. Coombes	[14] [18]
11	L. Ashley Cowart	[10]
12	Helena F. Deus	[18]
13	Madilyn Fletcher	[1]
14	Jennifer Franklin	[9]
15	Rodrigo Gouveia-Oliveira	[5]
16	Paul S. Gross	[8]
17	Yusuf A. Hannun	[10]
18	Bryan T. J. Hennessy	[18]
19	Elizabeth G. Hill	[14]
20	Matthew J. Jenny	[8]
21	Liu Hong Jiang	[7]
22	Yuliya V. Karpievitch	[11] [14]
23	Xinghua Lu	[12]
24	António Maretzek	[1]
25	Brian McGlothlen	[19]
26	David J. Mckillen	[8]
27	Gordon B. Mills	[18]
28	Rick Moerschell	[19]
29	Jeffrey S. Morris	[14]
30	Peter A. Noble	[1]
31	Arlindo L. Oliveira	[20]
32	Konan Peck	[12]
33	Francisco R. Pinto	[10] [15]
34	Balaji Rajagopalan	[19]
35	Mário Ramirez	[15]
36	B. Rohrer	[10]
37	Helena Santos	[17]
38	John Schwacke	[3]
39	Elizabeth H. Slate	[12]
40	Adam J. Smolka	[14]
41	Romesh Stanislaus	[7] [9] [18] [19]
42	Martha Swartz	[7]
43	Ana Tereza R. Vasconcelos	[17]
44	Marco Vilela	[17]
45	Susana Vinga	[2] [4] [5] [13] [16] [17] [21]
46	Eberhard O. Voit	[6] [12] [17]
47	Xiaoshu Wang	[20]
48	Gregory W. Warr	[8]
49	Shuyuan Wu	[8]
50	Wenying Xu	[12]

Colors in the list of coauthors