Richa Agarwala Vis

*	2009
22	EE	William Klimke, Richa Agarwala, Azat Badretdin, Slava Chetvernin, Stacy Ciufo, Boris Fedorov, Boris Kiryutin, Kathleen O'Neill, Wolfgang Resch, Sergei Resenchuk, Susan Schafer, Igor Tolstoy, Tatiana A. Tatusova: The National Center for Biotechnology Information's Protein Clusters Database. Nucleic Acids Research 37(Database-Issue): 216-223 (2009)
	2008
21	EE	Aleksandr Morgulis, George Coulouris, Yan Raytselis, Thomas L. Madden, Richa Agarwala, Alejandro A. Schäffer: Database indexing for production MegaBLAST searches. Bioinformatics 24(16): 1757-1764 (2008)
20	EE	Aleksandr Morgulis, George Coulouris, Yan Raytselis, Thomas L. Madden, Richa Agarwala, Alejandro A. Schäffer: Database indexing for production MegaBLAST searches. Bioinformatics 24(24): 2942 (2008)
	2007
19	EE	Sergey A. Shiryev, Jason S. Papadopoulos, Alejandro A. Schäffer, Richa Agarwala: Improved BLAST searches using longer words for protein seeding. Bioinformatics 23(21): 2949-2951 (2007)
18	EE	Jason S. Papadopoulos, Richa Agarwala: COBALT: constraint-based alignment tool for multiple protein sequences. Bioinformatics 23(9): 1073-1079 (2007)
17	EE	Alejandro A. Schäffer, Edward Stallknecht Rice, William Cook, Richa Agarwala: rh_tsp_map 3.0: end-to-end radiation hybrid mapping with improved speed and quality control. Bioinformatics 23(9): 1156-1158 (2007)
	2006
16	EE	Aleksandr Morgulis, E. Michael Gertz, Alejandro A. Schäffer, Richa Agarwala: WindowMasker: window-based masker for sequenced genomes. Bioinformatics 22(2): 134-141 (2006)
15	EE	Aleksandr Morgulis, E. Michael Gertz, Alejandro A. Schäffer, Richa Agarwala: A Fast and Symmetric DUST Implementation to Mask Low-Complexity DNA Sequences. Journal of Computational Biology 13(5): 1028-1040 (2006)
	2000
14		Richa Agarwala, Leslie G. Biesecker, Alejandro A. Schäffer: Inverse inbreeding coefficient problems with an application to linkage analysis of recessive diseases in inbred populations. Discrete Applied Mathematics 104(1-3): 3-44 (2000)
	1999
13	EE	Richa Agarwala, Leslie G. Biesecker, Alejandro A. Schäffer: Inverse Inbreeding Coefficient Problems with an Application to Linkage Analysis of Recessive Diseases in Inbred Populations. SODA 1999: 840-841
12		Richa Agarwala, Vineet Bafna, Martin Farach, Mike Paterson, Mikkel Thorup: On the Approximability of Numerical Taxonomy (Fitting Distances by Tree Metrics). SIAM J. Comput. 28(3): 1073-1085 (1999)
	1997
11	EE	Richa Agarwala, Serafim Batzoglou, Vlado Dancík, Scott E. Decatur, Martin Farach, Sridhar Hannenhalli, S. Muthukrishnan, Steven Skiena: Local rules for protein folding on a triangular lattice and generalized hydrophobicity in the HP model. RECOMB 1997: 1-2
10		Richa Agarwala, Serafim Batzoglou, Vlado Dancík, Scott E. Decatur, Martin Farach, Sridhar Hannenhalli, Steven Skiena: Local Rules for Protein Folding on a Triangular Lattice and Generalized Hydrophobicity in the HP Model. SODA 1997: 390-399
9		Richa Agarwala, Serafim Batzoglou, Vlado Dancík, Scott E. Decatur, Sridhar Hannenhalli, Martin Farach, S. Muthukrishnan, Steven Skiena: Local Rules for Protein Folding on a Triangular Lattice and Generalized Hydrophobicity in the HP Model. Journal of Computational Biology 4(3): 275-296 (1997)
	1996
8		Richa Agarwala, Vineet Bafna, Martin Farach, Babu O. Narayanan, Mike Paterson, Mikkel Thorup: On the Approximability of Numerical Taxonomy (Fitting Distances by Tree Metrics). SODA 1996: 365-372
7		Richa Agarwala, David Fernández-Baca: Simple Algorithms for Perfect Phylogeny and Triangulating Colored Graphs. Int. J. Found. Comput. Sci. 7(1): 11-22 (1996)
6		Richa Agarwala, David Fernández-Baca: Weighted Multidimensional Search and Its Application to Convex Optimization. SIAM J. Comput. 25(1): 83-99 (1996)
	1995
5	EE	Richa Agarwala, David Fernández-Baca: Weighted Search in the Plane. Inf. Process. Lett. 54(2): 97-100 (1995)
4		Richa Agarwala, David Fernández-Baca, Giora Slutzki: Fast Algorithms for Inferring Evolutionary Trees. Journal of Computational Biology 2(3): 397-407 (1995)
	1994
3		Richa Agarwala, David Fernández-Baca: A Polynomial-Time Algorithm for the Perfect Phylogeny Problem when the Number of Character States is Fixed. SIAM J. Comput. 23(6): 1216-1224 (1994)
	1993
2		Richa Agarwala, David Fernández-Baca: A Polynomial-Time Algorithm for the Perfect Phylogeny Problem when the Number of Character States is Fixed FOCS 1993: 140-147
	1992
1	EE	Richa Agarwala, David Fernández-Baca: Solving the Lagrangian Dual when the Number of Constraints is Fixed. FSTTCS 1992: 164-175

Coauthor Index

1	Azat Badretdin	[22]
2	Vineet Bafna	[8] [12]
3	Serafim Batzoglou	[9] [10] [11]
4	Leslie G. Biesecker	[13] [14]
5	Slava Chetvernin	[22]
6	Stacy Ciufo	[22]
7	William Cook	[17]
8	George Coulouris	[20] [21]
9	Vlado Dancík	[9] [10] [11]
10	Scott E. Decatur	[9] [10] [11]
11	Martin Farach-Colton (Martin Farach)	[8] [9] [10] [11] [12]
12	Boris Fedorov	[22]
13	David Fernández-Baca	[1] [2] [3] [4] [5] [6] [7]
14	E. Michael Gertz	[15] [16]
15	Sridhar Hannenhalli	[9] [10] [11]
16	Boris Kiryutin	[22]
17	William Klimke	[22]
18	Thomas L. Madden	[20] [21]
19	Aleksandr Morgulis	[15] [16] [20] [21]
20	S. Muthukrishnan (S. Muthu Muthukrishnan)	[9] [11]
21	Babu O. Narayanan	[8]
22	Kathleen O'Neill	[22]
23	Jason S. Papadopoulos	[18] [19]
24	Mike Paterson	[8] [12]
25	Yan Raytselis	[20] [21]
26	Wolfgang Resch	[22]
27	Sergei Resenchuk	[22]
28	Edward Stallknecht Rice	[17]
29	Susan Schafer	[22]
30	Alejandro A. Schäffer	[13] [14] [15] [16] [17] [19] [20] [21]
31	Sergey A. Shiryev	[19]
32	Steven Skiena	[9] [10] [11]
33	Giora Slutzki	[4]
34	Tatiana A. Tatusova	[22]
35	Mikkel Thorup	[8] [12]
36	Igor Tolstoy	[22]

Colors in the list of coauthors