BSB 2009: Porto Alegre, Brazil

Algorithmic Approaches for Molecular Biology Problems

• Irina Astrovskaya, Alexander Zelikovsky:
  Genotype Tagging with Limited Overfitting. 1-12
  
• Ulisses Dias, Zanoni Dias:
  Constraint Programming Models for Transposition Distance Problem. 13-23
  
• Freddy Cliquet, Guillaume Fertin, Irena Rusu, Dominique Tessier:
  Comparison of Spectra in Unsequenced Species. 24-35
  

Micro-array Analysis

• Cristian Andrés Gallo, Jessica Andrea Carballido, Ignacio Ponzoni:
  BiHEA: A Hybrid Evolutionary Approach for Microarray Biclustering. 36-47
  
• Ivan G. Costa, Ana Carolina Lorena, Liciana R. M. P. y Peres, Marcílio Carlos Pereira de Souto:
  Using Supervised Complexity Measures in the Analysis of Cancer Gene Expression Data Sets. 48-59
  
• Mónica G. Larese, Juan Carlos Gomez:
  Quantitative Improvements in cDNA Microarray Spot Segmentation. 60-72
  

Machine Learning Methods for Classification

• Tulio C. Silva, Pedro A. Berger, Roberto T. Arrial, Roberto C. Togawa, Marcelo M. Brigido, Maria Emilia M. T. Walter:
  SOM-PORTRAIT: Identifying Non-coding RNAs Using Self-Organizing Maps. 73-85
  
• Cássia Trojahn dos Santos, Ana L. C. Bazzan, Ney Lemke:
  Automatic Classification of Enzyme Family in Protein Annotation. 86-96
  
• Paulo Henrique Ribeiro Gabriel, Alexandre C. B. Delbem:
  Representations for Evolutionary Algorithms Applied to Protein Structure Prediction Problem Using HP Model. 97-108
  
• Ricardo Cerri, Renato R. O. da Silva, André C. P. L. F. de Carvalho:
  Comparing Methods for Multilabel Classification of Proteins Using Machine Learning Techniques. 109-120
  
• Max Pereira, Vítor Santos Costa, Rui Camacho, Nuno A. Fonseca, Carlos Simões, Rui M. M. Brito:
  Comparative Study of Classification Algorithms Using Molecular Descriptors in Toxicological DataBases. 121-132
  

In Silico Simulation

• Alexandre de Castro, Carlos Frederico Fronza, Poliana Fernanda Giachetto, Domingos Alves:
  Influence of Antigenic Mutations in Time Evolution of the Immune Memory - A Dynamic Modeling. 133-142
  

Short Papers

• Ana T. Winck, Karina S. Machado, Osmar Norberto de Souza, Duncan D. Ruiz:
  FReDD: Supporting Mining Strategies through a Flexible-Receptor Docking Database. 143-146
  
• Fabiano C. Fernandes, William F. Porto, Octavio L. Franco:
  A Wide Antimicrobial Peptides Search Method Using Fuzzy Modeling. 147-150
  
• Sibele Borsuk, Fabiana Kommling Seixas, Daniela Fernandes Ramos, Caroline Rizzi, Odir Antonio Dellagostin:
  Identification of Proteins from Tuberculin Purified Protein Derivative (PPD) with Potential for TB Diagnosis Using Bioinformatics Analysis. 151-155
  
• Dennis Maletich Junqueira, Rúbia Marília de Medeiros, Sabrina Esteves de Matos Almeida, Vanessa Rodrigues Paixão-Cortez, Paulo Michel Roehe, Fernando Rosado Spilki:
  Mapping HIV-1 Subtype C gp120Epitopes Using a Bioinformatic Approach. 156-159
  
• Maurício Menegatti Rigo, Dinler Amaral Antunes, Gustavo Fioravanti Vieira, José Artur Bogo Chies:
  MHC: Peptide Analysis: Implications on the Immunogenicity of Hantaviruses' N protein. 160-163
  
• Giovani Rubert Librelotto, José Carlos Merino Mombach, Marialva Sinigaglia, Éder Simão, Heleno Borges Cabral, Mauro A. A. Castro:
  An Ontology to Integrate Transcriptomics and Interatomics Data Involved in Gene Pathways of Genome Stability. 164-167