6. WABI 2006: Zurich, Switzerland

• Markus T. Friberg, Pedro Gonnet, Yves Barral, Nicol N. Schraudolph, Gaston H. Gonnet:
  Measures of Codon Bias in Yeast, the tRNA Pairing Index and Possible DNA Repair Mechanisms. 1-11
  
• Sebastian Böcker, Matthias C. Letzel, Zsuzsanna Lipták, Anton Pervukhin:
  Decomposing Metabolomic Isotope Patterns. 12-23
  
• Hongmei Zhu, Jiaxin Wang, Zehong Yang, Yixu Song:
  A Method to Design Standard HMMs with Desired Length Distribution for Biological Sequence Analysis. 24-31
  
• Marta Luksza, Boguslaw Kluge, Jerzy Ostrowski, Jakub Karczmarski, Anna Gambin:
  Efficient Model-Based Clustering for LC-MS Data. 32-43
  
• Lukas Burger, Erik van Nimwegen:
  A Bayesian Algorithm for Reconstructing Two-Component Signaling Networks. 44-55
  
• Bethany Man-Yee Chan, Joseph Wun-Tat Chan, Francis Y. L. Chin, Stanley P. Y. Fung, Ming-Yang Kao:
  Linear-Time Haplotype Inference on Pedigrees Without Recombinations. 56-67
  
• Yinglei Song, Chunmei Liu, Russell L. Malmberg, Liming Cai:
  Phylogenetic Network Inferences Through Efficient Haplotyping. 68-79
  
• Leo van Iersel, Judith Keijsper, Steven Kelk, Leen Stougie:
  Beaches of Islands of Tractability: Algorithms for Parsimony and Minimum Perfect Phylogeny Haplotyping Problems. 80-91
  
• Jens Gramm, Tzvika Hartman, Till Nierhoff, Roded Sharan, Till Tantau:
  On the Complexity of SNP Block Partitioning Under the Perfect Phylogeny Model. 92-102
  
• Paul Jenkins, Rune B. Lyngsø, Jotun Hein:
  How Many Transcripts Does It Take to Reconstruct the Splice Graph? 103-114
  
• Jieping Ye, Ivaylo Ilinkin, Ravi Janardan, Adam Isom:
  Multiple Structure Alignment and Consensus Identification for Proteins. 115-125
  
• Aaron E. Darling, Todd J. Treangen, Louxin Zhang, Carla Kuiken, Xavier Messeguer, Nicole T. Perna:
  Procrastination Leads to Efficient Filtration for Local Multiple Alignment. 126-137
  
• Minmei Hou, Piotr Berman, Louxin Zhang, Webb Miller:
  Controlling Size When Aligning Multiple Genomic Sequences with Duplications. 138-149
  
• Daniel H. Huson, Mike A. Steel, Jim Whitfield:
  Reducing Distortion in Phylogenetic Networks. 150-161
  
• Barbara Holland, Glenn Conner, Katharina T. Huber, Vincent Moulton:
  Imputing Supertrees and Supernetworks from Quartets. 162
  
• Anne Bergeron, Julia Mixtacki, Jens Stoye:
  A Unifying View of Genome Rearrangements. 163-173
  
• István Miklós, Timothy Brooks Paige, Péter Ligeti:
  Efficient Sampling of Transpositions and Inverted Transpositions for Bayesian MCMC. 174-185
  
• Augusto F. Vellozo, Carlos E. R. Alves, Alair Pereira do Lago:
  Alignment with Non-overlapping Inversions in O(n³)-Time. 186-196
  
• Geir Kjetil Sandve, Magnar Nedland, Øyvind Bø Syrstad, Lars Andreas Eidsheim, Osman Abul, Finn Drabløs:
  Accelerating Motif Discovery: Motif Matching on Parallel Hardware. 197-206
  
• Jeff M. Phillips, Johannes Rudolph, Pankaj K. Agarwal:
  Segmenting Motifs in Protein-Protein Interface Surfaces. 207-218
  
• Eun-Jong Hong, Tomás Lozano-Pérez:
  Protein Side-Chain Placement Through MAP Estimation and Problem-Size Reduction. 219-230
  
• Shuai Cheng Li, Ming Li:
  On the Complexity of the Crossing Contact Map Pattern Matching Problem. 231-241
  
• Dandan Song, Zhidong Deng:
  A Fuzzy Dynamic Programming Approach to Predict RNA Secondary Structure. 242-251
  
• Kathleen Steinhöfel, Alexandros Skaliotis, Andreas Alexander Albrecht:
  Landscape Analysis for Protein-Folding Simulation in the H-P Model. 252-261
  
• Jizhen Zhao, Russell L. Malmberg, Liming Cai:
  Rapid ab initio RNA Folding Including Pseudoknots Via Graph Tree Decomposition. 262-273
  
• Oleg Rokhlenko, Tomer Shlomi, Roded Sharan, Eytan Ruppin, Ron Y. Pinter:
  Flux-Based vs. Topology-Based Similarity of Metabolic Genes. 274-285
  
• Dumitru Brinza, Alexander Zelikovsky:
  Combinatorial Methods for Disease Association Search and Susceptibility Prediction. 286-297
  
• Sven Rahmann, Gunnar W. Klau:
  Integer Linear Programs for Discovering Approximate Gene Clusters. 298-309
  
• Lusheng Wang, Yu Lin, Xiaowen Liu:
  Approximation Algorithms for Bi-clustering Problems. 310-320
  
• Sérgio A. de Carvalho, Sven Rahmann:
  Improving the Layout of Oligonucleotide Microarrays: Pivot Partitioning. 321-332
  
• Marco Terzer, Jörg Stelling:
  Accelerating the Computation of Elementary Modes Using Pattern Trees. 333-343
  
• Nikola Stojanovic, Piotr Berman:
  A Linear-Time Algorithm for Studying Genetic Variation. 344-354
  
• Christian Blum, Mateu Yábar Vallès:
  New Constructive Heuristics for DNA Sequencing by Hybridization. 355-365
  
• Dekel Tsur:
  Optimal Probing Patterns for Sequencing by Hybridization. 366-375
  
• Laxmi Parida:
  Gapped Permutation Patterns for Comparative Genomics. 376-387
  
• Miklós Csürös, Ming-Te Cheng, Andreas Grimm, Amine Halawani, Perrine Landreau:
  Segmentation with an Isochore Distribution. 388-399